Python Biomedical-image-processing Resources

Ryan Murdock has done it again, combining OpenAI's CLIP and the generator from a BigGAN! This repository wraps up his work so it is easily accessible to anyone who owns a GPU.

Jina is geared towards building search systems for any kind of data, including text, images, audio, video and many more. With the modular design & multi-layer abstraction, you can leverage the efficient patterns to build the system by parts, or chaining them into a Flow for an end-to-end experience.

DeepMetaHandles (CVPR2021 Oral) [paper] [animations] DeepMetaHandles is a shape deformation technique. It learns a set of meta-handles for each given

DTI-Sprites Pytorch implementation of "Unsupervised Layered Image Decomposition into Object Prototypes" paper Check out our paper and webpage for deta

HiFiGAN Denoiser This is a Unofficial Pytorch implementation of the paper HiFi-GAN: High Fidelity Denoising and Dereverberation Based on Speech Deep F

MixStyle This repo contains the code of our ICLR'21 paper, "Domain Generalization with MixStyle". The OpenReview link is https://openreview.net/forum?

Towards Good Practices for Efficiently Annotating Large-Scale Image Classification Datasets This is the official implementation of "Towards Good Pract

Desmos Bezier Renderer A simple image/video to Desmos graph converter run locally Sample Result Setup Install dependencies apt update apt install git

NRSC5-DUI is a graphical interface for nrsc5. It makes it easy to play your favorite FM HD radio stations using an RTL-SDR dongle. It will also displa

LightSeq is a high performance inference library for sequence processing and generation implemented in CUDA. It enables highly efficient computation of modern NLP models such as BERT, GPT2, Transformer, etc. It is therefore best useful for Machine Translation, Text Generation, Dialog， Language Modelling, and other related tasks using these models.

Vision Longformer This project provides the source code for the vision longformer paper. Multi-Scale Vision Longformer: A New Vision Transformer for H

Range Image-based 3D LiDAR Localization This repo contains the code for our ICRA2021 paper: Range Image-based LiDAR Localization for Autonomous Vehicl

One Stop Anomaly Shop (OSAS) Quick start guide Step 1: Get/build the docker image Option 1: Use precompiled image (might not reflect latest changes):

GAN Ensembling Project Page | Paper | Bibtex Ensembling with Deep Generative Views. Lucy Chai, Jun-Yan Zhu, Eli Shechtman, Phillip Isola, Richard Zhan

TorchFlare TorchFlare is a simple, beginner-friendly and an easy-to-use PyTorch Framework train your models without much effort. It provides an almost

SGRAF PyTorch implementation for AAAI2021 paper of “Similarity Reasoning and Filtration for Image-Text Matching”. It is built on top of the SCAN and C

🤗 The largest hub of ready-to-use NLP datasets for ML models with fast, easy-to-use and efficient data manipulation tools

Speech Algorithms Collections

Spatially-Correlative Loss arXiv | website We provide the Pytorch implementation of "The Spatially-Correlative Loss for Various Image Translation Task

arXiv Dual Contrastive Learning Adversarial Generative Networks (DCLGAN) We provide our PyTorch implementation of DCLGAN, which is a simple yet powerf

Two-Stage Peer-Regularized Feature Recombination for Arbitrary Image Style Transfer Paper on arXiv Public PyTorch implementation of two-stage peer-reg

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

Improving Vision-and-Language Navigation with Image-Text Pairs from the Web Arjun Majumdar, Ayush Shrivastava, Stefan Lee, Peter Anderson, Devi Parikh

Human Attention for Text Classification Re-implementation of the paper Human Attention Maps for Text Classification: Do Humans and Neural Networks Foc

Image Inpainting with External-internal Learning and Monochromic Bottleneck This repository is for the CVPR 2021 paper: 'Image Inpainting with Externa

Learning the Best Pooling Strategy for Visual Semantic Embedding Official PyTorch implementation of the paper Learning the Best Pooling Strategy for V

clean-fid: Fixing Inconsistencies in FID Project | Paper The FID calculation involves many steps that can produce inconsistencies in the final metric.

CoaT: Co-Scale Conv-Attentional Image Transformers Introduction This repository contains the official code and pretrained models for CoaT: Co-Scale Co

MultiResUNet Rethinking the U-Net architecture for multimodal biomedical image segmentation This repository contains the original implementation of "M

Cross-modal-retrieval Our approach is focus on Activity Image-to-Video Retrieval (AIVR) task. The compared methods are state-of-the-art single modalit

OCTIS : Optimizing and Comparing Topic Models is Simple! OCTIS (Optimizing and Comparing Topic models Is Simple) aims at training, analyzing and compa

Image-Scaling Attacks & Defenses This repository belongs to our publication: Erwin Quiring, David Klein, Daniel Arp, Martin Johns and Konrad Rieck. Ad

color-matcher Description color-matcher enables color transfer across images which comes in handy for automatic color-grading of photographs, painting

Labelled data remains a scarce resource in many practical NLP scenarios. This is especially the case when working with resource-poor languages (or text domains), or when using task-specific labels without pre-existing datasets. The only available option is often to collect and annotate texts by hand, which is expensive and time-consuming.

BMW-IntelOpenVINO-Segmentation-Inference-API This is a repository for a semantic segmentation inference API using the OpenVINO toolkit. It's supported

Random Face A simple python library for fast image generation of people who do not exist. For more details, please refer to the [paper](https://arxiv.

LED2-Net This is PyTorch implementation of our CVPR 2021 Oral paper "LED2-Net: Monocular 360˚ Layout Estimation via Differentiable Depth Rendering". Y

Bayesian Image Reconstruction using Deep Generative Models R. Marinescu, D. Moyer, P. Golland For technical inquiries, please create a Github issue. F

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

CeiT : Convolutional enhanced image Transformer This is an unofficial PyTorch implementation of Incorporating Convolution Designs into Visual Transfor

Swapping Autoencoder for Deep Image Manipulation Taesung Park, Jun-Yan Zhu, Oliver Wang, Jingwan Lu, Eli Shechtman, Alexei A. Efros, Richard Zhang UC

BMW-Anonymization-Api Data privacy and individuals’ anonymity are and always have been a major concern for data-driven companies. Therefore, we design

FedNLP is a research-oriented benchmarking framework for advancing federated learning (FL) in natural language processing (NLP). It uses FedML repository as the git submodule. In other words, FedNLP only focuses on adavanced models and dataset, while FedML supports various federated optimizers (e.g., FedAvg) and platforms (Distributed Computing, IoT/Mobile, Standalone).

Data Annotation, Data Labeling, Annotation Tooling, Training Data for Machine Learning

Introduction MMEditing is an open source image and video editing toolbox based on PyTorch. It is a part of the OpenMMLab project. The master branch wo

What's New: March 2021: Added RegNetZ models November 2020: Vision Transformers now available, with training recipes! 2020-11-20: Classy Vision v0.5 R

Text detection and recognition This repository contains tool which allow to detect region with text and translate it one by one. Description Two pretr

Kornia is a differentiable computer vision library for PyTorch. It consists of a set of routines and differentiable modules to solve generic computer

Deep learning networks This repo is used to research convolutional networks primarily for computer vision tasks. For this purpose, the repo contains (

Augmentor is an image augmentation library in Python for machine learning. It aims to be a standalone library that is platform and framework independe

Image Classification Project Killer in PyTorch This repo is designed for those who want to start their experiments two days before the deadline and ki

Awesome-NLP-Research (ANLP)

Stock Market Buy/Sell/Hold prediction Using convolutional Neural Network This repo is an attempt to implement the research paper titled "Algorithmic F

About This repo contains the official implementation of the Aligning Latent and Image Spaces to Connect the Unconnectable paper. It is a GAN model whi

Cornell Biomedical Knowledge Hub (CBKH) CBKG integrates data from 18 publicly available biomedical databases. The current version of CBKG contains a t

Few-shot Image Generation via Cross-domain Correspondence Utkarsh Ojha, Yijun Li, Jingwan Lu, Alexei A. Efros, Yong Jae Lee, Eli Shechtman, Richard Zh

Under-exposure introduces a series of visual degradation, i.e. decreased visibility, intensive noise, and biased color, etc. To address these problems, we propose a novel semi-supervised learning approach for low-light image enhancement.

I-BERT: Integer-only BERT Quantization HuggingFace Implementation I-BERT is also available in the master branch of HuggingFace! Visit the following li

Implicit3DUnderstanding (Im3D) [Project Page] Holistic 3D Scene Understanding from a Single Image with Implicit Representation Cheng Zhang, Zhaopeng C

Keyword: Speech Translation, Spoken Language Processing, Natural Language Processing

CVPR2018-Baseline-PSNRplot This is my codes that can visualize the psnr image in testing videos. Future Frame Prediction for Anomaly Detection – A New

Pixel Art Reverse Image Search for OpenGameArt What does the final search look like? The final search with an example can be found here. It looks like

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Welcome to the lidar package lidar is Python package for delineating the nested hierarchy of surface depressions in digital elevation models (DEMs). I

eo-box eobox is a Python package with a small collection of tools for working with Remote Sensing / Earth Observation data. Package Overview So far, t

pyroSAR A Python Framework for Large-Scale SAR Satellite Data Processing The pyroSAR package aims at providing a complete solution for the scalable or

untiler Utility to take a directory of {z}/{x}/{y}.(jpg|png) tiles, and stitch into a scenetiff (tif w/ exact merc tile bounds). Future versions will

GIPPY Gippy is a Python library for image processing of geospatial raster data. The core of the library is implemented as a C++ library, libgip, with

rio-tiler User friendly Rasterio plugin to read raster datasets. Documentation: https://cogeotiff.github.io/rio-tiler/ Source Code: https://github.com

Documentation | Documentation (dev version) | Contact | Part of the Fatiando a Terra project About Verde is a Python library for processing spatial da

mahotas-imread: Read Image Files IO with images and numpy arrays. Mahotas-imread is a simple module with a small number of functions: imread Reads an

Tool for visualizing attention in the Transformer model (BERT, GPT-2, Albert, XLNet, RoBERTa, CTRL, etc.)

saveddit is a bulk media downloader for reddit pip3 install saveddit Setting up authorization Register an application with Reddit Write down your clie

Single-Image-Reflection-Removal-Beyond-Linearity Paper Single Image Reflection Removal Beyond Linearity. Qiang Wen, Yinjie Tan, Jing Qin, Wenxi Liu, G

A Python Library for Document Layout Understanding

Invertible Image Signal Processing This repository includes official codes for "Invertible Image Signal Processing (CVPR2021)". Figure: Our framework

CoReNet CoReNet is a technique for joint multi-object 3D reconstruction from a single RGB image. It produces coherent reconstructions, where all objec

⚡ Automatically decrypt encryptions without knowing the key or cipher, decode encodings, and crack hashes ⚡

Ratio Image Based Rendering for Deep Single-Image Portrait Relighting [Project Page] This is part of the Deep Portrait Relighting project. If you find

AOT-GAN for High-Resolution Image Inpainting Arxiv Paper | AOT-GAN: Aggregated Contextual Transformations for High-Resolution Image Inpainting Yanhong

CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee

UA-GEC: Grammatical Error Correction and Fluency Corpus for the Ukrainian Language This repository contains UA-GEC data and an accompanying Python lib

StyleSpace Analysis: Disentangled Controls for StyleGAN Image Generation Demo video: CVPR 2021 Oral: Single Channel Manipulation: Localized or attribu

TextFlint is a multilingual robustness evaluation platform for natural language processing tasks, which unifies general text transformation, task-specific transformation, adversarial attack, sub-population, and their combinations to provide a comprehensive robustness analysis.

DNA This repository provides the code of our paper: Blockwisely Supervised Neural Architecture Search with Knowledge Distillation. Illustration of DNA

TRIQ Implementation TF-Keras implementation of TRIQ as described in Transformer for Image Quality Assessment. Installation Clone this repository. Inst

Regularizing Generative Adversarial Networks under Limited Data [Project Page][Paper] Implementation for our GAN regularization method. The proposed r

Improving Unsupervised Image Clustering With Robust Learning This repo is the PyTorch codes for "Improving Unsupervised Image Clustering With Robust L

A Python package for interactive mapping with Google Earth Engine, ipyleaflet, and folium

A collection of loss functions for medical image segmentation

SimDeblur (Simple Deblurring) is an open source framework for image and video deblurring toolbox based on PyTorch, which contains most deep-learning based state-of-the-art deblurring algorithms. It is easy to implement your own image or video deblurring or other restoration algorithms.

wsss-analysis The code of: A Comprehensive Analysis of Weakly-Supervised Semantic Segmentation in Different Image Domains, arXiv pre-print 2019 paper.

An Image is Worth 16x16 Words, What is a Video Worth? paper Official PyTorch Implementation Gilad Sharir, Asaf Noy, Lihi Zelnik-Manor DAMO Academy, Al

LightningDOT: Pre-training Visual-Semantic Embeddings for Real-Time Image-Text Retrieval This repository contains source code and pre-trained/fine-tun

Revamping Cross-Modal Recipe Retrieval with Hierarchical Transformers and Self-supervised Learning This is the PyTorch companion code for the paper: A

ArtFlow Official PyTorch implementation of the paper: ArtFlow: Unbiased Image Style Transfer via Reversible Neural Flows Jie An*, Siyu Huang*, Yibing

The guide to tackle with the Text Summarization

Pseudo-ISP: Learning Pseudo In-camera Signal Processing Pipeline from A Color Image Denoiser Abstract The success of deep denoisers on real-world colo

Leveraging Instance-, Image- and Dataset-Level Information for Weakly Supervised Instance Segmentation This paper has been accepted and early accessed