Python Biomedical-applications Resources

Why? restrict scope of file system access run any application without root privileges creates usable "Desktop applications" to integrate into your nor

Machine Learning Theory and Application Overview This repository is inspired by the Hung-yi Lee Machine Learning Course 2021. In that course, professo

Fiddle Fiddle is a Python-first configuration library particularly well suited to ML applications. Fiddle enables deep configurability of parameters i

LinkBERT: A Knowledgeable Language Model Pretrained with Document Links This repo provides the model, code & data of our paper: LinkBERT: Pretraining

SOFIMA SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy

WIE-WoC IEEE-WIE presents WIE Week of Code (WIEWoC), a 3-days long open-source contribution event starting from 1st March, highlighting different pyth

SciFive SciFive provided a Text-Text framework for biomedical language and natural language in NLP. Under the T5's framework and desrbibed in the pape

Bitcoin Realized Volatility Forecasting with GARCH and Multivariate LSTM Author: Chi Bui This Repository Repository Directory ├── README.md

Python-based Monitoring Check Plugins Collection This Enterprise Class Check Plugin Collection offers a package of more than 130 Python-based, Nagios-

Django - Shared App & Isolated Databases An app that demonstrates the implementa

Hyper-Convolution Networks for Biomedical Image Segmentation Code for our WACV 2022 paper "Hyper-Convolution Networks for Biomedical Image Segmentatio

Speech Recognition is an important feature in several applications used such as home automation, artificial intelligence, etc. This article aims to provide an introduction on how to make use of the SpeechRecognition and pyttsx3 library of Python.

nango Streamlining Django forms to provide all the wins of single-page-applications without the pain. Key features Available to all Django deployments

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Machine Learning and NLP: Advances and Applications This repository hosts the course materials used for a 3-day seminar "Machine Learning and NLP: Adv

Kivy is an open source Python framework for creating cross-platform multi-touch mobile applications with Natural User Interface.

tkFontBox This simple python program can be used to make FontChooser dialog in Tkinter Applications. how to use? Copy the tkFontBox.py file into your

Flask Sitemapper Flask Sitemapper is a small Python 3 package that generates XML sitemaps for Flask applications. This allows you to create a nice and

Juniper Command System is a Micro CLI Tool that allows you to manage your files, launch applications, as well as providing extra tools for OS Management.

Run Windows Applications on Linux as if they are native, Use linux applications to launch files files located in windows vm without needing to install applications on vm. With easy to use configuration GUI

Dicionário 📕 Dicionário criado com o objetivo de auxiliar no treinamento de nov

NLP-Natural-Language-Processing NLP applications using deep learning like text generation etc. 1- Poetry Generation: Using a collection of Irish Poem

This is a Kaggle competition in which we have to identify if the given lesion image is malignant or not for Melanoma which is a type of skin cancer.

AssetBrowser A qt asset browser for applications like houdini/nuke/maya/blender Currently in development Note: Only houdini plugin available during de

Computer Vision Applications Project This project is at it's initial phase. This is all about the implementation of different computer vision techniqu

GreaseLM: Graph REASoning Enhanced Language Models This repo provides the source code & data of our paper "GreaseLM: Graph REASoning Enhanced Language

Python-Data-Analysis-and-Visualisation-Projects Data analysis and visualisation projects from a range of individual projects and applications. Python

Labelbox Labelbox is the fastest way to annotate data to build and ship artificial intelligence applications. Use this github repository to help you s

STonKGs STonKGs is a Sophisticated Transformer that can be jointly trained on biomedical text and knowledge graphs. This multimodal Transformer combin

cell_counting_v2 The repository includes the code for training cell counting applications. (Keras + Tensorflow) Dataset can be downloaded here : http:

Add Popovers to Links in Flask App It is a fairly common feature in web applications to have links that open a popover when hovered. Twitter does this

bqplot Gallery This is a gallery of bqplot examples. View the gallery at https://bqplot.github.io/bqplot-gallery. Contributing new examples Clone this

Computational Optimal Transport for Machine Learning Reading Group Over the last few years, optimal transport (OT) has quickly become a central topic

NHS Streamlit App Template Deployment (local) The tool has been built using Stre

Biomedical Entity Linking This repo provides the code for the paper BERT might be Overkill: A Tiny but Effective Biomedical Entity Linker based on Res

A set of Python codes for the generation of biomedical ontologies from the MeSH keywords of the PubMed scholarly publications

Pose Detection Project Description: Human pose estimation from video plays a critical role in various applications such as quantifying physical exerci

Compartmental epidemic model to assess undocumented infections: applications to SARS-CoV-2 epidemics in Brazil - Datasets and Codes The codes for simu

MoViDNN: A Mobile Platform for Evaluating Video Quality Enhancement with Deep Neural Networks MoViDNN is an Android application that can be used to ev

BERN2 We present BERN2 (Advanced Biomedical Entity Recognition and Normalization), a tool that improves the previous neural network-based NER tool by

Borderless-Window-Utility Modifies window style to force most applications into

AWS Serverless Application Model (AWS SAM) The AWS Serverless Application Model (SAM) is an open-source framework for building serverless applications

Generate FastAPI projects for high performance applications. Based on MVC architectural pattern, WSGI + ASGI. Includes tests, pipeline, base utilities, Helm chart, and script for bootstrapping local Minikube with high available Redis cluster.

This is your launchpad that comes with a variety of applications waiting to run on your kubernetes cluster with a single click.

GPOEO GPOEO is a micro-intrusive GPU online energy optimization framework for iterative applications. We also implement ODPP [1] as a comparison. [1]

BERN2 We present BERN2 (Advanced Biomedical Entity Recognition and Normalization), a tool that improves the previous neural network-based NER tool by

CLICK-Jack It is a automatic tool to find Clickjacking Vulnerability in various

Wearables Development Toolkit (WDK) The Wearables Development Toolkit (WDK) is a framework and set of tools to facilitate the iterative development of

Polygon.io Examples Example applications, dashboards, scripts, notebooks, and other utilities built using Polygon.io. Examples Preview Name Type Langu

Creative Applications of Deep Learning w/ Tensorflow This repository contains lecture transcripts and homework assignments as Jupyter Notebooks for th

AWS SAM The AWS Serverless Application Model (SAM) is an open-source framework for building serverless applications. It provides shorthand syntax to e

Full-stack web application framework that uses Python and MariaDB on the server side and a tightly integrated client side library.

BERN2 We present BERN2 (Advanced Biomedical Entity Recognition and Normalization

Ionburst SDK for Python The Ionburst SDK for Python enables developers to easily integrate with Ionburst Cloud, building in ultra-secure and private o

U-Net Implementation By Christopher Ley This is my interpretation and implementation of the famous paper "U-Net: Convolutional Networks for Biomedical

🚀 An end-to-end ML applications using PyTorch, W&B, FastAPI, Docker, Streamlit and Heroku

Dbt-core - dbt enables data analysts and engineers to transform their data using the same practices that software engineers use to build applications.

Sigma Coding Tutorials & Resources YouTube • Facebook Support Sigma Coding Patreon • GitHub Sponsor • Shop Amazon Table of Contents Overview Topics Re

Rendering of live Jupyter notebooks with interactive widgets. Introduction Voilà turns Jupyter notebooks into standalone web applications. Unlike the

🌀 Pykka Pykka makes it easier to build concurrent applications. Pykka is a Python implementation of the actor model. The actor model introduces some

pytest_pyramid pytest_pyramid provides basic fixtures for testing pyramid applications with pytest test suite. By default, pytest_pyramid will create

Abseil Python Common Libraries This repository is a collection of Python library code for building Python applications. The code is collected from Goo

Develop open-source Python Arabic NLP libraries that the Arab world will easily use in all Natural Language Processing applications

txtai: Build AI-powered semantic search applications in Go txtai executes machine-learning workflows to transform data and build AI-powered semantic s

wampy [whomp-ee] For a background as to what WAMP is, please see here. This is a Python implementation of WAMP using Gevent, but you can also configur

HaikunatorPY Generate Heroku-like random names to use in your python applications. Installation pip install haikunator Usage Haikunator is pretty sim

Py2neo v3 Py2neo is a client library and toolkit for working with Neo4j from within Python applications and from the command line. The core library ha

Prescribed-time Control Prescribed-time control (PTC) blocks in Simulink environment, MATLAB R2020b. For more theoretical details, refer to the papers

SFM SOCK A websocket client for Source Filmmaker intended to trasmit scene and frame data to other applications. This software can be used to transmit

⚡ Serverless Framework – Build web, mobile and IoT applications with serverless architectures using AWS Lambda, Azure Functions, Google CloudFunctions & more! –

Micro-service Создание микросервиса Цель работы Познакомиться с механизмом работы современных веб-приложений и микросервисной архитектуры в процессе в

cakelog a lightweight logging library for python applications This is a very small logging library to make logging in python easy and simple. config o

TensorFlow Tutorials You can find python source code under the python directory, and associated notebooks under notebooks. Source code Description 1 b

pyramid_basemodel pyramid_basemodel is a thin, low level package that provides an SQLAlchemy declarative Base and a thread local scoped Session that c

log4j-tools Quick links Click to find: Inclusions of log4j2 in compiled code Calls to log4j2 in compiled code Calls to log4j2 in source code Overview

pygame is a Free and Open Source python programming language library for making multimedia applications like games built on top of the excellent SDL library. C, Python, Native, OpenGL.

WSGI Types for Python This is an attempt to bring some type safety to WSGI applications using Python's new typing features (TypedDicts, Protocols). It

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

System Monitoring Center GTK3 and Python 3 based, system performance and usage monitoring tool. Features: Detailed system performance and usage usage

Hey there, this is Greppo... A Python framework for building geospatial web-applications. Greppo is an open-source Python framework that makes it easy

Python REMote Interface library. Platform independent. In about 100 Kbytes, perfect for your diet.

Flask Google Maps Easy to use Google Maps in your Flask application requires Jinja Flask A google api key get here Contribute To contribute with the p

BT-Unet: A-Self-supervised-learning-framework-for-biomedical-image-segmentation-using-Barlow-Twins Deep learning has brought most profound contributio

PixMix Introduction In real-world applications of machine learning, reliable and safe systems must consider measures of performance beyond standard te

macOS Development Setup Welcome to MacOS Local Development & Setup. An ongoing curated list of OS X best applications, libraries, frameworks and tools

A toolkit for computational pathology and machine learning. View documentation Please cite our paper Installation There are several ways to install Pa

Logan Logan is a toolkit for running standalone Django applications. It provides you with tools to create a CLI runner, manage settings, and the abili

CBio-NAMER CBioNAMER (Nested nAMed Entity Recognition for Chinese Biomedical Text) is our method used in CBLUE (Chinese Biomedical Language Understand

Python code examples on how to create several applications using Dear PyGui. Includes building and editing a table, as well as visualizing sorting algorithms in a plot.

Biblioteca para a geração de codigos QR (BRCode como chamados na documentação do BACEN) a fins de facilitar a exibição para pagamentos ao consumidor.

Repositorio,com pequenos aplicativos uteis e funcionais A ideia e ir deselvolvendo pequenos aplicativos funcionais e adicionar a este repositorio List

farabio is a minimal PyTorch toolkit for out-of-the-box deep learning support in biomedical imaging. For further information, see Wikis and Docs.

Tools for curating biomedical training data for large-scale language modeling

EasyTransfer is designed to make the development of transfer learning in NLP applications easier. The literature has witnessed the success of applying

webapp-wordlists This repository contains wordlists for each versions of common web applications and content management systems (CMS). Each version co

ConnTact Software framework to enable agile robotic assembly applications. (Connect + Tactile) Overview Installation Development of framework was done

FCS-applications Source code for CsiNet and CRNet using the Fully Connected Layer-Shared feedback architecture. Introduction This repository contains

Object mapping, and more, for Redis and Python Redis OM Python makes it easy to model Redis data in your Python applications. Redis OM Python | Redis

Neutron Make desktop applications using HTML and CSS with python What is Neutron Neutron will allow developers to design modern applications in python

Dj_sentry This Django application intialize Sentry SDK to your Django application. How to install You can install this packaging by using: pip install