Python Biomedical-image-processing Resources

The open-source core of Pinry, a tiling image board system for people who want to save, tag, and share images, videos and webpages in an easy to skim

CIPS -- Official Pytorch Implementation of the paper Image Generators with Conditionally-Independent Pixel Synthesis Requirements pip install -r requi

Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo

Quru Image Server - dynamic imaging for web and print QIS is a high performance web server for creating and delivering dynamic images. It is ideal for

Photonix Photo Manager This is a photo management application based on web technologies. Run it on your home server and it will let you find what you

Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou

PyParsing -- A Python Parsing Module Introduction The pyparsing module is an alternative approach to creating and executing simple grammars, vs. the t

TransUNet This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation Usage

Official PyTorch code for ClipBERT, an efficient framework for end-to-end learning on image-text and video-text tasks. It takes raw videos/images + text as inputs, and outputs task predictions. ClipBERT is designed based on 2D CNNs and transformers, and uses a sparse sampling strategy to enable efficient end-to-end video-and-language learning.

Hide secret texts/messages inside an image. You can optionally encrypt your texts with a password using AES-256 before encoding into the image.

Rebiber: A tool for normalizing bibtex with official info. We often cite papers using their arXiv versions without noting that they are already PUBLIS

HyperTag HyperTag helps humans intuitively express how they think about their files using tags and machine learning.

一键翻译各类图片内文字 针对群内、各个图站上大量不太可能会有人去翻译的图片设计，让我这种日语小白能够勉强看懂图片 主要支持日语，不过也能识别汉语和小写英文 支持简单的涂白和嵌字

HyperTag helps humans intuitively express how they think about their files using tags and machine learning. Represent how you think using tags. Find what you look for using semantic search for your text documents (yes, even PDF's) and images.

Supported tags and respective Dockerfile links python3.8, latest (Dockerfile) python3.7, (Dockerfile) python3.6 (Dockerfile) python3.8-slim (Dockerfil

cookiecutter-spacy-fastapi Python cookiecutter API for quick deployments of spaCy models with FastAPI Azure Search The API interface is compatible wit

MatchZoo Facilitating the design, comparison and sharing of deep text matching models. MatchZoo 是一个通用的文本匹配工具包，它旨在方便大家快速的实现、比较、以及分享最新的深度文本匹配模型。 🔥 News

anaGo anaGo is a Python library for sequence labeling(NER, PoS Tagging,...), implemented in Keras. anaGo can solve sequence labeling tasks such as nam

polyglot Polyglot is a natural language pipeline that supports massive multilingual applications. Free software: GPLv3 license Documentation: http://p

gensim – Topic Modelling in Python Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora. Targ

WHAT: Supervised text vectorization tool Textvec is a text vectorization tool, with the aim to implement all the "classic" text vectorization NLP meth

NeuralQA: A Usable Library for (Extractive) Question Answering on Large Datasets with BERT Still in alpha, lots of changes anticipated. View demo on n

textpipe: clean and extract metadata from text textpipe is a Python package for converting raw text in to clean, readable text and extracting metadata

YouTokenToMe YouTokenToMe is an unsupervised text tokenizer focused on computational efficiency. It currently implements fast Byte Pair Encoding (BPE)

DELTA - A DEep learning Language Technology plAtform What is DELTA? DELTA is a deep learning based end-to-end natural language and speech processing p

Texar is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar provides

A Deep Learning NLP/NLU library by Intel® AI Lab Overview | Models | Installation | Examples | Documentation | Tutorials | Contributing NLP Architect

Scattertext 0.1.0.0 A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding t

Basic Utilities for PyTorch Natural Language Processing (NLP) PyTorch-NLP, or torchnlp for short, is a library of basic utilities for PyTorch NLP. tor

This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

spacy-transformers: Use pretrained transformers like BERT, XLNet and GPT-2 in spaCy This package provides spaCy components and architectures to use tr

sense2vec: Contextually-keyed word vectors sense2vec (Trask et. al, 2015) is a nice twist on word2vec that lets you learn more interesting and detaile

Translations 🇩🇪 DE 🇫🇷 FR 🇭🇺 HU 🇮🇩 ID 🇮🇹 IT 🇳🇱 NL 🇧🇷 PT-BR 🇷🇺 RU 🇨🇳 ZH ➡️ Documentation | Discord | Installation Guide ⬅️ Fully autom

PyTextRank PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, used to: extract the top-ranked phrases from text document

fastNLP fastNLP是一款轻量级的自然语言处理（NLP）工具包，目标是快速实现NLP任务以及构建复杂模型。 fastNLP具有如下的特性： 统一的Tabular式数据容器，简化数据预处理过程； 内置多种数据集的Loader和Pipe，省去预处理代码; 各种方便的NLP工具，例如Embedd

Stanza: A Python NLP Library for Many Human Languages The Stanford NLP Group's official Python NLP library. It contains support for running various ac

Spark NLP: State of the Art Natural Language Processing Spark NLP is a Natural Language Processing library built on top of Apache Spark ML. It provide

textacy: NLP, before and after spaCy textacy is a Python library for performing a variety of natural language processing (NLP) tasks, built on the hig

An easier way to build neural search on the cloud Jina is a deep learning-powered search framework for building cross-/multi-modal search systems (e.g

GluonNLP: Your Choice of Deep Learning for NLP GluonNLP is a toolkit that helps you solve NLP problems. It provides easy-to-use tools that helps you l

Provides an implementation of today's most used tokenizers, with a focus on performance and versatility. Main features: Train new vocabularies and tok

TextBlob: Simplified Text Processing Homepage: https://textblob.readthedocs.io/ TextBlob is a Python (2 and 3) library for processing textual data. It

An Apache 2.0 NLP research library, built on PyTorch, for developing state-of-the-art deep learning models on a wide variety of linguistic tasks. Quic

A very simple framework for state-of-the-art NLP. Developed by Humboldt University of Berlin and friends. IMPORTANT: (30.08.2020) We moved our models

SentencePiece SentencePiece is an unsupervised text tokenizer and detokenizer mainly for Neural Network-based text generation systems where the vocabu

Rasa Open Source Rasa is an open source machine learning framework to automate text-and voice-based conversations. With Rasa, you can build contextual

Natural Language Toolkit (NLTK) NLTK -- the Natural Language Toolkit -- is a suite of open source Python modules, data sets, and tutorials supporting

State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 🤗 Transformers provides thousands of pretrained models to perform tasks o

spaCy: Industrial-strength NLP spaCy is a library for advanced Natural Language Processing in Python and Cython. It's built on the very latest researc

PyVista Deployment Build Status Metrics Citation License Community 3D plotting and mesh analysis through a streamlined interface for the Visualization

A Python library for audio feature extraction, classification, segmentation and applications This doc contains general info. Click here for the comple

⚠️ Checkout develop branch to see what is coming in pyannote.audio 2.0: a much smaller and cleaner codebase Python-first API (the good old pyannote-au

Audiomentations A Python library for audio data augmentation. Inspired by albumentations. Useful for deep learning. Runs on CPU. Supports mono audio a

SpeechPy Official Project Documentation Table of Contents Documentation Which Python versions are supported Citation How to Install? Local Installatio

AudioLazy Development Last release PyPI status Real-Time Expressive Digital Signal Processing (DSP) Package for Python! Laziness and object representa

Summary Pyroomacoustics is a software package aimed at the rapid development and testing of audio array processing algorithms. The content of the pack

MDCT A fast MDCT implementation using SciPy and FFTs Installation As usual pip install mdct Dependencies NumPy SciPy STFT Usage import mdct spectrum

AudioTK Audio ToolKit is a set of audio filters. It helps assembling workflows for specific audio processing workloads. The audio workflow is split in

torchaudio: an audio library for PyTorch The aim of torchaudio is to apply PyTorch to the audio domain. By supporting PyTorch, torchaudio follows the

AudioLazy Development Last release PyPI status Real-Time Expressive Digital Signal Processing (DSP) Package for Python! Laziness and object representa

UA-GEC: Grammatical Error Correction and Fluency Corpus for the Ukrainian Language This repository contains UA-GEC data and an accompanying Python lib

Welcome to LedFx ✨ -Making music come alive! LedFx website: https://ledfx.app/ What is LedFx? What LedFx offers is the ability to take audio input, an

You Only Need Adversarial Supervision for Semantic Image Synthesis Official PyTorch implementation of the ICLR 2021 paper "You Only Need Adversarial S

Exploring Cross-Image Pixel Contrast for Semantic Segmentation Exploring Cross-Image Pixel Contrast for Semantic Segmentation, Wenguan Wang, Tianfei Z

SAHI: Slicing Aided Hyper Inference A vision library for performing sliced inference on large images/small objects Overview Object detection and insta

PyTorch implementation of Normalizer-Free Networks and SGD - Adaptive Gradient Clipping Paper: https://arxiv.org/abs/2102.06171.pdf Original code: htt

Multi-Stage Progressive Image Restoration Syed Waqas Zamir, Aditya Arora, Salman Khan, Munawar Hayat, Fahad Shahbaz Khan, Ming-Hsuan Yang, and Ling Sh

MatchZoo Facilitating the design, comparison and sharing of deep text matching models. MatchZoo 是一个通用的文本匹配工具包，它旨在方便大家快速的实现、比较、以及分享最新的深度文本匹配模型。 🔥 News

anaGo anaGo is a Python library for sequence labeling(NER, PoS Tagging,...), implemented in Keras. anaGo can solve sequence labeling tasks such as nam

polyglot Polyglot is a natural language pipeline that supports massive multilingual applications. Free software: GPLv3 license Documentation: http://p

gensim – Topic Modelling in Python Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora. Targ

WHAT: Supervised text vectorization tool Textvec is a text vectorization tool, with the aim to implement all the "classic" text vectorization NLP meth

NeuralQA: A Usable Library for (Extractive) Question Answering on Large Datasets with BERT Still in alpha, lots of changes anticipated. View demo on n

textpipe: clean and extract metadata from text textpipe is a Python package for converting raw text in to clean, readable text and extracting metadata

YouTokenToMe YouTokenToMe is an unsupervised text tokenizer focused on computational efficiency. It currently implements fast Byte Pair Encoding (BPE)

DELTA - A DEep learning Language Technology plAtform What is DELTA? DELTA is a deep learning based end-to-end natural language and speech processing p

Texar is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar provides

A Deep Learning NLP/NLU library by Intel® AI Lab Overview | Models | Installation | Examples | Documentation | Tutorials | Contributing NLP Architect

Scattertext 0.1.0.0 A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding t

Basic Utilities for PyTorch Natural Language Processing (NLP) PyTorch-NLP, or torchnlp for short, is a library of basic utilities for PyTorch NLP. tor

This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

spacy-transformers: Use pretrained transformers like BERT, XLNet and GPT-2 in spaCy This package provides spaCy components and architectures to use tr

sense2vec: Contextually-keyed word vectors sense2vec (Trask et. al, 2015) is a nice twist on word2vec that lets you learn more interesting and detaile

Translations 🇩🇪 DE 🇫🇷 FR 🇭🇺 HU 🇮🇩 ID 🇮🇹 IT 🇳🇱 NL 🇧🇷 PT-BR 🇷🇺 RU 🇨🇳 ZH ➡️ Documentation | Discord | Installation Guide ⬅️ Fully autom

PyTextRank PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, used to: extract the top-ranked phrases from text document

fastNLP fastNLP是一款轻量级的自然语言处理（NLP）工具包，目标是快速实现NLP任务以及构建复杂模型。 fastNLP具有如下的特性： 统一的Tabular式数据容器，简化数据预处理过程； 内置多种数据集的Loader和Pipe，省去预处理代码; 各种方便的NLP工具，例如Embedd

Stanza: A Python NLP Library for Many Human Languages The Stanford NLP Group's official Python NLP library. It contains support for running various ac

Spark NLP: State of the Art Natural Language Processing Spark NLP is a Natural Language Processing library built on top of Apache Spark ML. It provide

textacy: NLP, before and after spaCy textacy is a Python library for performing a variety of natural language processing (NLP) tasks, built on the hig

An easier way to build neural search on the cloud Jina is a deep learning-powered search framework for building cross-/multi-modal search systems (e.g

GluonNLP: Your Choice of Deep Learning for NLP GluonNLP is a toolkit that helps you solve NLP problems. It provides easy-to-use tools that helps you l

Provides an implementation of today's most used tokenizers, with a focus on performance and versatility. Main features: Train new vocabularies and tok

TextBlob: Simplified Text Processing Homepage: https://textblob.readthedocs.io/ TextBlob is a Python (2 and 3) library for processing textual data. It

An Apache 2.0 NLP research library, built on PyTorch, for developing state-of-the-art deep learning models on a wide variety of linguistic tasks. Quic

A very simple framework for state-of-the-art NLP. Developed by Humboldt University of Berlin and friends. IMPORTANT: (30.08.2020) We moved our models

SentencePiece SentencePiece is an unsupervised text tokenizer and detokenizer mainly for Neural Network-based text generation systems where the vocabu

Rasa Open Source Rasa is an open source machine learning framework to automate text-and voice-based conversations. With Rasa, you can build contextual

Natural Language Toolkit (NLTK) NLTK -- the Natural Language Toolkit -- is a suite of open source Python modules, data sets, and tutorials supporting

State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 🤗 Transformers provides thousands of pretrained models to perform tasks o

spaCy: Industrial-strength NLP spaCy is a library for advanced Natural Language Processing in Python and Cython. It's built on the very latest researc