Python Computational-geometry Resources

Rotapy Purpose Generate Gaussian 09 input files for the rotamers of an input compound. Distance to the axis of rotation remains constant throughout th

freud Overview The freud Python library provides a simple, flexible, powerful set of tools for analyzing trajectories obtained from molecular dynamics

Geometry Processing with Neural Fields Pytorch implementation for the NeurIPS 2021 paper: Geometry Processing with Neural Fields Guandao Yang, Serge B

POS-Tagger This repository details the creation of a Part-of-Speech tagger using Trigram Hidden Markov Models to predict word tags in a word sequence.

This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.

Documentation redrawing Python package provinding tools for artistic interactive applications using AI Created by ReDrawing Campinas team for the Open

Geometry Calculator Web The is a simple Flask-based web application that uses a Geometry Calculator Tool created out of assignments from my Intro to P

DQC: Differentiable Quantum Chemistry Differentiable quantum chemistry package. Currently only support differentiable density functional theory (DFT)

GBW This repo implements several applications of the proposed generalized Bures-Wasserstein (GBW) geometry on symmetric positive definite matrices. Ap

feature-set-comp Compares various time-series feature sets on computational performance, within-set structure, and between-set relationships. Reposito

A minimal Python package that produces slice plots through h5m DAGMC geometry files Installation pip install dagmc_geometry_slice_plotter Python API U

DeepXDE Voting on whether we should have a Slack channel for discussion. DeepXDE is a library for scientific machine learning. Use DeepXDE if you need

SynergyNet 3DV 2021: Synergy between 3DMM and 3D Landmarks for Accurate 3D Facial Geometry Cho-Ying Wu, Qiangeng Xu, Ulrich Neumann, CGIT Lab at Unive

Patch-Based Deep Autoencoder for Point Cloud Geometry Compression Overview The ever-increasing 3D application makes the point cloud compression unprec

TensorFlow RiemOpt A library for manifold-constrained optimization in TensorFlow. Installation To install the latest development version from GitHub:

Mathematical modeling is a powerful method for the analysis of complex biological systems. Although there are many researches devoted on produ

pyHype: Computational Fluid Dynamics in Python pyHype is a Python framework for developing parallelized Computational Fluid Dynamics software to solve

MaD GUI Machine Learning and Data Analytics Graphical User Interface MaD GUI is a basis for graphical annotation and computational analysis of time se

MUSCO - Multimodal Descriptions of Social Concepts Automatic Modeling of (Highly Abstract) Social Concepts evoked by Art Images This project aims to i

3D Infomax improves GNNs for Molecular Property Prediction Video | Paper We pre-train GNNs to understand the geometry of molecules given only their 2D

GUPNet This is the official implementation of "Geometry Uncertainty Projection Network for Monocular 3D Object Detection". citation If you find our wo

BabelCalib: A Universal Approach to Calibrating Central Cameras This repository contains the MATLAB implementation of the BabelCalib calibration frame

Multiview Neural Surface Reconstruction by Disentangling Geometry and Appearance Project Page | Paper | Data This repository contains an implementatio

Geometry Sketcher Constraint-based sketcher addon for Blender that allows to create precise 2d shapes by defining a set of geometric constraints like

CS 506 - Computational Tools for Data Science Code, slides, and notes for Boston University CS506 Fall 2021 The Final Project Repository can be found

bartpy Python bindings for BART. Overview This repo contains code to generate an updated Python wrapper for the Berkeley Advance Reconstruction Toolbo

nlcc Install pip install nlcc Must have Open-AI Codex key: export OPENAI_API_KEY=your key here then nlcc key bindings ctrl-w copy to clipboard (Note

PyNIF3D is an open-source PyTorch-based library for research on neural implicit functions (NIF)-based 3D geometry representation. It aims to accelerate research by providing a modular design that allows for easy extension and combination of NIF-related components, as well as readily available paper implementations and dataset loaders.

MolEncoder Molecular AutoEncoder in PyTorch Install $ git clone https://github.com/cxhernandez/molencoder.git && cd molencoder $ python setup.py insta

PoinTr: Diverse Point Cloud Completion with Geometry-Aware Transformers Created by Xumin Yu*, Yongming Rao*, Ziyi Wang, Zuyan Liu, Jiwen Lu, Jie Zhou

Towers of Babel: Combining Images, Language, and 3D Geometry for Learning Multimodal Vision Download links and PyTorch implementation of "Towers of Ba

Contrastive Learning of Object Representations Supervisor: Prof. Dr. Gemma Roig Institutions: Goethe University CVAI - Computational Vision & Artifici

Hello 🤟 #Team-Greider The team of 20 people for HackBio'2021 Virtual Bioinformatics Internship 💝 🖨️ 👨‍💻 HackBio: https://thehackbio.com 💬 Ask us

Introduction Code and data for ACL 2021 Paper "Inter-GPS: Interpretable Geometry Problem Solving with Formal Language and Symbolic Reasoning". We cons

HodgeNet | Webpage | Paper | Video HodgeNet: Learning Spectral Geometry on Triangle Meshes Dmitriy Smirnov, Justin Solomon SIGGRAPH 2021 Set-up To ins

GDR-Net This repo provides the PyTorch implementation of the work: Gu Wang, Fabian Manhardt, Federico Tombari, Xiangyang Ji. GDR-Net: Geometry-Guided

Geometry-Consistent Neural Shape Representation with Implicit Displacement Fields [project page][paper][cite] Geometry-Consistent Neural Shape Represe

XL-Sum This repository contains the code, data, and models of the paper titled "XL-Sum: Large-Scale Multilingual Abstractive Summarization for 44 Lang

XL-Sum This repository contains the code, data, and models of the paper titled "XL-Sum: Large-Scale Multilingual Abstractive Summarization for 44 Lang

EgoNet Official project website for the CVPR 2021 paper "Exploring intermediate representation for monocular vehicle pose estimation". This repo inclu

JittorVis - Visual understanding of deep learning model.

Geometry-Aware Gradient Algorithms for Neural Architecture Search This repository contains the code required to run the experiments for the DARTS sear

House-GAN++ Code and instructions for our paper: House-GAN++: Generative Adversarial Layout Refinement Network towards Intelligent Computational Agent

DeepFaceEditing: Deep Face Generation and Editing with Disentangled Geometry and Appearance Control One version of our system is implemented using the

Geometry-Free View Synthesis: Transformers and no 3D Priors Geometry-Free View Synthesis: Transformers and no 3D Priors Robin Rombach*, Patrick Esser*

Geometry-aware Instance-reweighted Adversarial Training This repository provides codes for Geometry-aware Instance-reweighted Adversarial Training (ht

Synergies Between Affordance and Geometry: 6-DoF Grasp Detection via Implicit Representations Zhenyu Jiang, Yifeng Zhu, Maxwell Svetlik, Kuan Fang, Yu

PyGEOS PyGEOS is a C/Python library with vectorized geometry functions. The geometry operations are done in the open-source geometry library GEOS. PyG

geojson-area Calculate the area inside of any GeoJSON geometry. This is a port of Mapbox's geojson-area for Python. Installation $ pip install area U

PICCL: Philosophical Integrator of Computational and Corpus Libraries PICCL offers a workflow for corpus building and builds on a variety of tools. Th

ReproZip ReproZip is a tool aimed at simplifying the process of creating reproducible experiments from command-line executions, a frequently-used comm

A Python library of various algorithms and utilities for 3D triangle meshes and point clouds. Managed by Nicholas Sharp, with new tools added lazily as needed. Currently, mainly bindings to C++ tools from geometry-central.

YouTokenToMe YouTokenToMe is an unsupervised text tokenizer focused on computational efficiency. It currently implements fast Byte Pair Encoding (BPE)

Scattertext 0.1.0.0 A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding t

cochlea cochlea is a collection of inner ear models. All models are easily accessible as Python functions. They take sound signal as input and return

YouTokenToMe YouTokenToMe is an unsupervised text tokenizer focused on computational efficiency. It currently implements fast Byte Pair Encoding (BPE)

Scattertext 0.1.0.0 A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding t

Colibri Core by Maarten van Gompel, [email protected], Radboud University Nijmegen Licensed under GPLv3 (See http://www.gnu.org/licenses/gpl-3.0.html

Ucto for Python This is a Python binding to the tokeniser Ucto. Tokenisation is one of the first step in almost any Natural Language Processing task,

Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy. Table of contents Overview Get in touch License an