160 Repositories
Python computational-geometry Libraries
Constraint-based geometry sketcher for blender
Constraint-based sketcher addon for Blender that allows to create precise 2d shapes by defining a set of geometric constraints like tangent, distance,
Computational Xmas Tree lights!
Computational Xmas Tree This repo contains the code for the computational illumination of a Christmas Tree! It is based on the work by Matt Parker fro
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
Molecular Docking integrated in Jupyter Notebooks Description | Citation | Installation | Examples | Limitations | License Table of content Descriptio
GitHub repository for the ICLR Computational Geometry & Topology Challenge 2021
ICLR Computational Geometry & Topology Challenge 2022 Welcome to the ICLR 2022 Computational Geometry & Topology challenge 2022 --- by the ICLR 2022 W
Code for the SIGGRAPH 2022 paper "DeltaConv: Anisotropic Operators for Geometric Deep Learning on Point Clouds."
DeltaConv [Paper] [Project page] Code for the SIGGRAPH 2022 paper "DeltaConv: Anisotropic Operators for Geometric Deep Learning on Point Clouds" by Ru
DLO8012: Natural Language Processing & CSL804: Computational Lab - II Semester VIII
NATURAL-LANGUAGE-PROCESSING-AND-COMPUTATIONAL-LAB-II DLO8012: NLP & CSL804: CL-II [SEMESTER VIII] Syllabus NLP - Reference Books THE WALL MEGA SATISH
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022).
GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation [OpenReview] [arXiv] [Code] The official implementation of GeoDiff: A Geome
A collection of educational notebooks on multi-view geometry and computer vision.
Multiview notebooks This is a collection of educational notebooks on multi-view geometry and computer vision. Subjects covered in these notebooks incl
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology Self-Supervised Vision Transformers Learn Visual Concepts in Histopatholog
(CVPR 2022 - oral) Multi-View Depth Estimation by Fusing Single-View Depth Probability with Multi-View Geometry
Multi-View Depth Estimation by Fusing Single-View Depth Probability with Multi-View Geometry Official implementation of the paper Multi-View Depth Est
Addon and nodes for working with structural biology and molecular data in Blender.
Molecular Nodes 🧬 🔬 💻 Buy Me a Coffee to Keep Development Going! Join a Community of Blender SciVis People! What is Molecular Nodes? Molecular Node
Converts geometry node attributes to built-in attributes
Attribute Converter Simplifies converting attributes created by geometry nodes to built-in attributes like UVs or vertex colors, as a single click ope
Image-to-image regression with uncertainty quantification in PyTorch
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
Face Mesh is a face geometry solution that estimates 468 3D face landmarks in real-time even on mobile devices
Face-Mesh Face Mesh is a face geometry solution that estimates 468 3D face landmarks in real-time even on mobile devices. It employs machine learning
Computational inteligence project on faces in the wild dataset
Table of Contents The general idea How these scripts work? Loading data Needed modules and global variables Parsing the arrays in dataset Extracting a
TkArt - A repository created to explore geometry and art creation using TkInter
tkArt A repository created to explore geometry and art creation using TkInter, a
WikiPron - a command-line tool and Python API for mining multilingual pronunciation data from Wiktionary
WikiPron WikiPron is a command-line tool and Python API for mining multilingual pronunciation data from Wiktionary, as well as a database of pronuncia
Source code related to the article submitted to the International Conference on Computational Science ICCS 2022 in London
POTHER: Patch-Voted Deep Learning-based Chest X-ray Bias Analysis for COVID-19 Detection Source code related to the article submitted to the Internati
CSPML (crystal structure prediction with machine learning-based element substitution)
CSPML (crystal structure prediction with machine learning-based element substitution) CSPML is a unique methodology for the crystal structure predicti
HistoKT: Cross Knowledge Transfer in Computational Pathology
HistoKT: Cross Knowledge Transfer in Computational Pathology Exciting News! HistoKT has been accepted to ICASSP 2022. HistoKT: Cross Knowledge Transfe
Python-geoarrow - Storing geometry data in Apache Arrow format
geoarrow Storing geometry data in Apache Arrow format Installation $ pip install
Contains modeling practice materials and homework for the Computational Neuroscience course at Okinawa Institute of Science and Technology
A310 Computational Neuroscience - Okinawa Institute of Science and Technology, 2022 This repository contains modeling practice materials and homework
TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow with breakpoints + real-time visualization of the data flowing through the computational graph
TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow (Google's Deep Learning framework) with breakpoints + real-time visualization of the data flowing through the computational graph.
Reading Group @mila-iqia on Computational Optimal Transport for Machine Learning Applications
Computational Optimal Transport for Machine Learning Reading Group Over the last few years, optimal transport (OT) has quickly become a central topic
Python implementation of 3D facial mesh exaggeration using the techniques described in the paper: Computational Caricaturization of Surfaces.
Python implementation of 3D facial mesh exaggeration using the techniques described in the paper: Computational Caricaturization of Surfaces.
A computational optimization project towards the goal of gerrymandering the results of a hypothetical election in the UK.
A computational optimization project towards the goal of gerrymandering the results of a hypothetical election in the UK.
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
TIA Toolbox Computational Pathology Toolbox developed at the TIA Centre Getting Started All Users This package is for those interested in digital path
Unsupervised text tokenizer focused on computational efficiency
YouTokenToMe YouTokenToMe is an unsupervised text tokenizer focused on computational efficiency. It currently implements fast Byte Pair Encoding (BPE)
Riemannian Geometry for Molecular Surface Approximation (RGMolSA)
Riemannian Geometry for Molecular Surface Approximation (RGMolSA) Introduction Ligand-based virtual screening aims to reduce the cost and duration of
Performance Analysis of Multi-user NOMA Wireless-Powered mMTC Networks: A Stochastic Geometry Approach
Performance Analysis of Multi-user NOMA Wireless-Powered mMTC Networks: A Stochastic Geometry Approach Thanh Luan Nguyen, Tri Nhu Do, Georges Kaddoum
Course on computational design, non-linear optimization, and dynamics of soft systems at UIUC.
Computational Design and Dynamics of Soft Systems · This is a repository that contains the source code for generating the lecture notes, handouts, exe
FDTD simulator that generates s-parameters from OFF geometry files using a GPU
Emport Overview This repo provides a FDTD (Finite Differences Time Domain) simulator called emport for solving RF circuits. Emport outputs its simulat
Advanced raster and geometry manipulations
buzzard In a nutshell, the buzzard library provides powerful abstractions to manipulate together images and geometries that come from different kind o
Neural network pruning for finding a sparse computational model for controlling a biological motor task.
MothPruning Scientific Overview Originally inspired by biological nervous systems, deep neural networks (DNNs) are powerful computational tools for mo
GDIT: Geometry Dash Info Tool
GDIT: Geometry Dash Info Tool This is the first large script that allows you to quickly get information from the Geometry Dash server
Orbital-patterns - A program which plots pattern that revolving planets make
orbital-patterns Click to spawn planets Press "S" to capture screenshot. Image w
This is an official repository of CLGo: Learning to Predict 3D Lane Shape and Camera Pose from a Single Image via Geometry Constraints
CLGo This is an official repository of CLGo: Learning to Predict 3D Lane Shape and Camera Pose from a Single Image via Geometry Constraints An earlier
GD-UltraHack - A Mod Menu for Geometry Dash. Specifically a MegahackV5 clone in Python. Only for Windows
GD UltraHack: The Mod Menu that Nobody asked for. This is a mod menu for the gam
PyTorch code for ICPR 2020 paper Future Urban Scene Generation Through Vehicle Synthesis
Future urban scene generation through vehicle synthesis This repository contains Pytorch code for the ICPR2020 paper "Future Urban Scene Generation Th
AttentionGAN for Unpaired Image-to-Image Translation & Multi-Domain Image-to-Image Translation
AttentionGAN-v2 for Unpaired Image-to-Image Translation AttentionGAN-v2 Framework The proposed generator learns both foreground and background attenti
PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation
PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation Created by Charles R. Qi, Hao Su, Kaichun Mo, Leonidas J. Guibas from Sta
Notebooks for computing approximations to the prime counting function using Riemann's formula.
Notebooks for computing approximations to the prime counting function using Riemann's formula.
Python library for loading and using triangular meshes.
Trimesh is a pure Python (2.7-3.4+) library for loading and using triangular meshes with an emphasis on watertight surfaces. The goal of the library i
A Python library for common tasks on 3D point clouds
Point Cloud Utils (pcu) - A Python library for common tasks on 3D point clouds Point Cloud Utils (pcu) is a utility library providing the following fu
PyCharge is an open-source computational electrodynamics Python simulator
PyCharge PyCharge is an open-source computational electrodynamics Python simulator that can calculate the electromagnetic fields and potentials genera
pyiron - an integrated development environment (IDE) for computational materials science.
pyiron pyiron - an integrated development environment (IDE) for computational materials science. It combines several tools in a common platform: Atomi
3D extension built off of shapely to make working with geospatial/trajectory data easier in python.
PyGeoShape 3D extension to shapely and pyproj to make working with geospatial/trajectory data easier in python. Getting Started Installation pip The e
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
NeoDTI NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions (Bioinformatics).
Unsupervised CNN for Single View Depth Estimation: Geometry to the Rescue
Realtime Unsupervised Depth Estimation from an Image This is the caffe implementation of our paper "Unsupervised CNN for single view depth estimation:
Geometry-Aware Learning of Maps for Camera Localization (CVPR2018)
Geometry-Aware Learning of Maps for Camera Localization This is the PyTorch implementation of our CVPR 2018 paper "Geometry-Aware Learning of Maps for
[PNAS2021] The neural architecture of language: Integrative modeling converges on predictive processing
The neural architecture of language: Integrative modeling converges on predictive processing Code accompanying the paper The neural architecture of la
A tool for calculating distortion parameters in coordination complexes.
OctaDist Octahedral distortion calculator: A tool for calculating distortion parameters in coordination complexes. https://octadist.github.io/ Registe
WIP: extracting Geometry utilities from datacube-core
odc.geo This is still work in progress. This repository contains geometry related code extracted from Open Datacube. For details and motivation see OD
A pythonic interface to high-throughput virtual screening software
pyscreener A pythonic interface to high-throughput virtual screening software Overview This repository contains the source of pyscreener, both a libra
Evaluation of file formats in the context of geo-referenced 3D geometries.
Geo-referenced Geometry File Formats Classic geometry file formats as .obj, .off, .ply, .stl or .dae do not support the utilization of coordinate syst
A PyTorch based deep learning library for drug pair scoring.
Documentation | External Resources | Datasets | Examples ChemicalX is a deep learning library for drug-drug interaction, polypharmacy side effect and
AtlasNet: A Papier-Mâché Approach to Learning 3D Surface Generation
AtlasNet [Project Page] [Paper] [Talk] AtlasNet: A Papier-Mâché Approach to Learning 3D Surface Generation Thibault Groueix, Matthew Fisher, Vladimir
Computational Methods Course at UdeA. Forked and size reduced from:
Computational Methods for Physics & Astronomy Book version at: https://restrepo.github.io/ComputationalMethods by: Sebastian Bustamante 2014/2015 Dieg
Code release of paper Improving neural implicit surfaces geometry with patch warping
NeuralWarp: Improving neural implicit surfaces geometry with patch warping Project page | Paper Code release of paper Improving neural implicit surfac
Reference code for the paper "Cross-Camera Convolutional Color Constancy" (ICCV 2021)
Cross-Camera Convolutional Color Constancy, ICCV 2021 (Oral) Mahmoud Afifi1,2, Jonathan T. Barron2, Chloe LeGendre2, Yun-Ta Tsai2, and Francois Bleibe
Generating Digital Painting Lighting Effects via RGB-space Geometry (SIGGRAPH2020/TOG2020)
Project PaintingLight PaintingLight is a project conducted by the Style2Paints team, aimed at finding a method to manipulate the illumination in digit
Unrestricted Facial Geometry Reconstruction Using Image-to-Image Translation
Unrestricted Facial Geometry Reconstruction Using Image-to-Image Translation [Arxiv] [Video] Evaluation code for Unrestricted Facial Geometry Reconstr
Code for TIP 2017 paper --- Illumination Decomposition for Photograph with Multiple Light Sources.
Illumination_Decomposition Code for TIP 2017 paper --- Illumination Decomposition for Photograph with Multiple Light Sources. This code implements the
Computational modelling of ray propagation through optical elements using the principles of geometric optics (Ray Tracer)
Computational modelling of ray propagation through optical elements using the principles of geometric optics (Ray Tracer) Introduction By applying the
The official repository for ROOT: analyzing, storing and visualizing big data, scientifically
About The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficien
Flow is a computational framework for deep RL and control experiments for traffic microsimulation.
Flow Flow is a computational framework for deep RL and control experiments for traffic microsimulation. See our website for more information on the ap
In generative deep geometry learning, we often get many obj files remain to be rendered
a python prompt cli script for blender batch render In deep generative geometry learning, we always get many .obj files to be rendered. Our rendered i
Simple yet powerful CAD (Computer Aided Design) library, written with Python.
Py-MADCAD it's time to throw parametric softwares out ! Simple yet powerful CAD (Computer Aided Design) library, written with Python. Installation
Code for Contrastive-Geometry Networks for Generalized 3D Pose Transfer
CGTransformer Code for our AAAI 2022 paper "Contrastive-Geometry Transformer network for Generalized 3D Pose Transfer" Contrastive-Geometry Transforme
A computational block to solve entity alignment over textual attributes in a knowledge graph creation pipeline.
How to apply? Create your config.ini file following the example provided in config.ini Choose one of the options below to run: Run with Python3 pip in
Supervised & unsupervised machine-learning techniques are applied to the database of weighted P4s which admit Calabi-Yau hypersurfaces.
Weighted Projective Spaces ML Description: The database of 5-vectors describing 4d weighted projective spaces which admit Calabi-Yau hypersurfaces are
Code for Contrastive-Geometry Networks for Generalized 3D Pose Transfer
Code for Contrastive-Geometry Networks for Generalized 3D Pose Transfer
MDAnalysis is a Python library to analyze molecular dynamics simulations.
MDAnalysis Repository README [*] MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale,
This repo contains the source code and a benchmark for predicting user's utilities with Machine Learning techniques for Computational Persuasion
Machine Learning for Argument-Based Computational Persuasion This repo contains the source code and a benchmark for predicting user's utilities with M
Implementation of "Large Steps in Inverse Rendering of Geometry"
Large Steps in Inverse Rendering of Geometry ACM Transactions on Graphics (Proceedings of SIGGRAPH Asia), December 2021. Baptiste Nicolet · Alec Jacob
Tools for computational pathology
A toolkit for computational pathology and machine learning. View documentation Please cite our paper Installation There are several ways to install Pa
Rapid experimentation and scaling of deep learning models on molecular and crystal graphs.
LitMatter A template for rapid experimentation and scaling deep learning models on molecular and crystal graphs. How to use Clone this repository and
âš¡ H2G-Net for Semantic Segmentation of Histopathological Images
H2G-Net This repository contains the code relevant for the proposed design H2G-Net, which was introduced in the manuscript "Hybrid guiding: A multi-re
Hyperbolic Procrustes Analysis Using Riemannian Geometry
Hyperbolic Procrustes Analysis Using Riemannian Geometry The code in this repository creates the figures presented in this article: Please notice that
[IEEE Transactions on Computational Imaging] Self-Gated Memory Recurrent Network for Efficient Scalable HDR Deghosting
Few-shot Deep HDR Deghosting This repository contains code and pretrained models for our paper: Self-Gated Memory Recurrent Network for Efficient Scal
Pytorch implementation of NeurIPS 2021 paper: Geometry Processing with Neural Fields.
Geometry Processing with Neural Fields Pytorch implementation for the NeurIPS 2021 paper: Geometry Processing with Neural Fields Guandao Yang, Serge B
Implementation of ICCV19 Paper "Learning Two-View Correspondences and Geometry Using Order-Aware Network"
OANet implementation Pytorch implementation of OANet for ICCV'19 paper "Learning Two-View Correspondences and Geometry Using Order-Aware Network", by
A DSL for data-driven computational pipelines
"Dataflow variables are spectacularly expressive in concurrent programming" Henri E. Bal , Jennifer G. Steiner , Andrew S. Tanenbaum Quick overview Ne
This repository contains the code for the paper "PIFu: Pixel-Aligned Implicit Function for High-Resolution Clothed Human Digitization"
PIFu: Pixel-Aligned Implicit Function for High-Resolution Clothed Human Digitization News: [2020/05/04] Added EGL rendering option for training data g
ChebLieNet, a spectral graph neural network turned equivariant by Riemannian geometry on Lie groups.
ChebLieNet: Invariant spectral graph NNs turned equivariant by Riemannian geometry on Lie groups Hugo Aguettaz, Erik J. Bekkers, Michaël Defferrard We
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks.
pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of
A collection of utility functions to prototype geometry processing research in python
gpytoolbox This repo is a work in progress and contains general utility functions I have needed to code while trying to work on geometry process resea
COLMAP - Structure-from-Motion and Multi-View Stereo
COLMAP About COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface.
A high-performance topological machine learning toolbox in Python
giotto-tda is a high-performance topological machine learning toolbox in Python built on top of scikit-learn and is distributed under the G
Self-Supervised Monocular 3D Face Reconstruction by Occlusion-Aware Multi-view Geometry Consistency[ECCV 2020]
Self-Supervised Monocular 3D Face Reconstruction by Occlusion-Aware Multi-view Geometry Consistency(ECCV 2020) This is an official python implementati
Scheme for training and applying a label propagation framework
Factorisation-based Image Labelling Overview This is a scheme for training and applying the factorisation-based image labelling (FIL) framework. Some
BookNLP, a natural language processing pipeline for books
BookNLP BookNLP is a natural language processing pipeline that scales to books and other long documents (in English), including: Part-of-speech taggin
Learning infinite-resolution image processing with GAN and RL from unpaired image datasets, using a differentiable photo editing model.
Exposure: A White-Box Photo Post-Processing Framework ACM Transactions on Graphics (presented at SIGGRAPH 2018) Yuanming Hu1,2, Hao He1,2, Chenxi Xu1,
Computations and statistics on manifolds with geometric structures.
Geomstats Code Continuous Integration Code coverage (numpy) Code coverage (autograd, tensorflow, pytorch) Documentation Community NEWS: Geomstats is r
PyTorch Code for "Generalization in Dexterous Manipulation via Geometry-Aware Multi-Task Learning"
Generalization in Dexterous Manipulation via Geometry-Aware Multi-Task Learning [Project Page] [Paper] Wenlong Huang1, Igor Mordatch2, Pieter Abbeel1,
Code-free deep segmentation for computational pathology
NoCodeSeg: Deep segmentation made easy! This is the official repository for the manuscript "Code-free development and deployment of deep segmentation
Geometry Dash Song Bypass with Python Flask Server
Geometry Dash Song Bypass with Python Flask Server
StackNet is a computational, scalable and analytical Meta modelling framework
StackNet This repository contains StackNet Meta modelling methodology (and software) which is part of my work as a PhD Student in the computer science
nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order
nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order