Python Medical-image-analysis Resources

RepMLP RepMLP: Re-parameterizing Convolutions into Fully-connected Layers for Image Recognition Released the code of RepMLP together with an example o

Time series Timeseries Deep Learning Pytorch fastai - State-of-the-art Deep Learning with Time Series and Sequences in Pytorch / fastai

A deeply supervised image fusion network for change detection in high resolution bi-temporal remote sensing images 深度监督影像融合网络DSIFN用于高分辨率双时相遥感影像变化检测 Of

FNet: Mixing Tokens with Fourier Transforms Pytorch implementation of Fnet : Mixing Tokens with Fourier Transforms. Citation: @misc{leethorp2021fnet,

PRAnCER (Platform enabling Rapid Annotation for Clinical Entity Recognition) is a web platform that enables the rapid annotation of medical terms within clinical notes. A user can highlight spans of text and quickly map them to concepts in large vocabularies within a single, intuitive platform.

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Crypto_analysis Discription: simple streamlit(screener) app to make MMA and OSC analysis for cyrpto-currenices, and gives resaults for which coins are

ResMLP - Pytorch Implementation of ResMLP, an all MLP solution to image classification out of Facebook AI, in Pytorch Install $ pip install res-mlp-py

This is the codebase for Diffusion Models Beat GANS on Image Synthesis.

This repo includes the Pytorch-Geometric implementation of a series of Graph Neural Network (GNN) based fake news detection models. All GNN models are implemented and evaluated under the User Preference-aware Fake News Detection (UPFD) framework. The fake news detection problem is instantiated as a graph classification task under the UPFD framework.

CVZone This is a Computer vision package that makes its easy to run Image processing and AI functions. At the core it uses OpenCV and Mediapipe librar

Self-Supervised Music Analysis Self-Supervised Contrastive Learning of Music Spectrograms Dataset Songs on the Billboard Year End Hot 100 were collect

Esparto is a simple HTML and PDF document generator for Python. Its primary use is for generating shareable single page reports with content from popular analytics and data science libraries.

python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu

30 Days Of Machine Learning Using Pytorch Objective of the repository is to learn and build machine learning models using Pytorch. List of Algorithms

ViT-V-Net: Vision Transformer for Volumetric Medical Image Registration keywords: vision transformer, convolutional neural networks, image registratio

MevonAI - Speech Emotion Recognition

A curated list of awesome anomaly detection works in medical imaging, inspired by the other awesome-* initiatives.

DCDicL for Image Denoising Hongyi Zheng*, Hongwei Yong*, Lei Zhang, "Deep Convolutional Dictionary Learning for Image Denoising," in CVPR 2021. (* Equ

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

Ryan Murdock has done it again, combining OpenAI's CLIP and the generator from a BigGAN! This repository wraps up his work so it is easily accessible to anyone who owns a GPU.

Jina is geared towards building search systems for any kind of data, including text, images, audio, video and many more. With the modular design & multi-layer abstraction, you can leverage the efficient patterns to build the system by parts, or chaining them into a Flow for an end-to-end experience.

DTI-Sprites Pytorch implementation of "Unsupervised Layered Image Decomposition into Object Prototypes" paper Check out our paper and webpage for deta

SentiLARE: Sentiment-Aware Language Representation Learning with Linguistic Knowledge Introduction SentiLARE is a sentiment-aware pre-trained language

MixStyle This repo contains the code of our ICLR'21 paper, "Domain Generalization with MixStyle". The OpenReview link is https://openreview.net/forum?

Towards Good Practices for Efficiently Annotating Large-Scale Image Classification Datasets This is the official implementation of "Towards Good Pract

Desmos Bezier Renderer A simple image/video to Desmos graph converter run locally Sample Result Setup Install dependencies apt update apt install git

ArviZ (pronounced "AR-vees") is a Python package for exploratory analysis of Bayesian models. Includes functions for posterior analysis, data storage, model checking, comparison and diagnostics

Vision Longformer This project provides the source code for the vision longformer paper. Multi-Scale Vision Longformer: A New Vision Transformer for H

Range Image-based 3D LiDAR Localization This repo contains the code for our ICRA2021 paper: Range Image-based LiDAR Localization for Autonomous Vehicl

GAN Ensembling Project Page | Paper | Bibtex Ensembling with Deep Generative Views. Lucy Chai, Jun-Yan Zhu, Eli Shechtman, Phillip Isola, Richard Zhan

TorchFlare TorchFlare is a simple, beginner-friendly and an easy-to-use PyTorch Framework train your models without much effort. It provides an almost

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

SGRAF PyTorch implementation for AAAI2021 paper of “Similarity Reasoning and Filtration for Image-Text Matching”. It is built on top of the SCAN and C

SARS-CoV-2 processing requests Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide. Prerequisites This autom

Spatially-Correlative Loss arXiv | website We provide the Pytorch implementation of "The Spatially-Correlative Loss for Various Image Translation Task

arXiv Dual Contrastive Learning Adversarial Generative Networks (DCLGAN) We provide our PyTorch implementation of DCLGAN, which is a simple yet powerf

Two-Stage Peer-Regularized Feature Recombination for Arbitrary Image Style Transfer Paper on arXiv Public PyTorch implementation of two-stage peer-reg

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

Improving Vision-and-Language Navigation with Image-Text Pairs from the Web Arjun Majumdar, Ayush Shrivastava, Stefan Lee, Peter Anderson, Devi Parikh

Image Inpainting with External-internal Learning and Monochromic Bottleneck This repository is for the CVPR 2021 paper: 'Image Inpainting with Externa

Learning the Best Pooling Strategy for Visual Semantic Embedding Official PyTorch implementation of the paper Learning the Best Pooling Strategy for V

clean-fid: Fixing Inconsistencies in FID Project | Paper The FID calculation involves many steps that can produce inconsistencies in the final metric.

CoaT: Co-Scale Conv-Attentional Image Transformers Introduction This repository contains the official code and pretrained models for CoaT: Co-Scale Co

MultiResUNet Rethinking the U-Net architecture for multimodal biomedical image segmentation This repository contains the original implementation of "M

Cross-modal-retrieval Our approach is focus on Activity Image-to-Video Retrieval (AIVR) task. The compared methods are state-of-the-art single modalit

OCTIS : Optimizing and Comparing Topic Models is Simple! OCTIS (Optimizing and Comparing Topic models Is Simple) aims at training, analyzing and compa

Image-Scaling Attacks & Defenses This repository belongs to our publication: Erwin Quiring, David Klein, Daniel Arp, Martin Johns and Konrad Rieck. Ad

color-matcher Description color-matcher enables color transfer across images which comes in handy for automatic color-grading of photographs, painting

BMW-IntelOpenVINO-Segmentation-Inference-API This is a repository for a semantic segmentation inference API using the OpenVINO toolkit. It's supported

Random Face A simple python library for fast image generation of people who do not exist. For more details, please refer to the [paper](https://arxiv.

LED2-Net This is PyTorch implementation of our CVPR 2021 Oral paper "LED2-Net: Monocular 360˚ Layout Estimation via Differentiable Depth Rendering". Y

Bayesian Image Reconstruction using Deep Generative Models R. Marinescu, D. Moyer, P. Golland For technical inquiries, please create a Github issue. F

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

CeiT : Convolutional enhanced image Transformer This is an unofficial PyTorch implementation of Incorporating Convolution Designs into Visual Transfor

ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis [arxiv|pdf|v

Swapping Autoencoder for Deep Image Manipulation Taesung Park, Jun-Yan Zhu, Oliver Wang, Jingwan Lu, Eli Shechtman, Alexei A. Efros, Richard Zhang UC

BMW-Anonymization-Api Data privacy and individuals’ anonymity are and always have been a major concern for data-driven companies. Therefore, we design

Data Annotation, Data Labeling, Annotation Tooling, Training Data for Machine Learning

Introduction MMEditing is an open source image and video editing toolbox based on PyTorch. It is a part of the OpenMMLab project. The master branch wo

What's New: March 2021: Added RegNetZ models November 2020: Vision Transformers now available, with training recipes! 2020-11-20: Classy Vision v0.5 R

Kornia is a differentiable computer vision library for PyTorch. It consists of a set of routines and differentiable modules to solve generic computer

Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo

Deep learning networks This repo is used to research convolutional networks primarily for computer vision tasks. For this purpose, the repo contains (

Augmentor is an image augmentation library in Python for machine learning. It aims to be a standalone library that is platform and framework independe

Image Classification Project Killer in PyTorch This repo is designed for those who want to start their experiments two days before the deadline and ki

Stock Market Buy/Sell/Hold prediction Using convolutional Neural Network This repo is an attempt to implement the research paper titled "Algorithmic F

About This repo contains the official implementation of the Aligning Latent and Image Spaces to Connect the Unconnectable paper. It is a GAN model whi

Few-shot Image Generation via Cross-domain Correspondence Utkarsh Ojha, Yijun Li, Jingwan Lu, Alexei A. Efros, Yong Jae Lee, Eli Shechtman, Richard Zh

Under-exposure introduces a series of visual degradation, i.e. decreased visibility, intensive noise, and biased color, etc. To address these problems, we propose a novel semi-supervised learning approach for low-light image enhancement.

Implicit3DUnderstanding (Im3D) [Project Page] Holistic 3D Scene Understanding from a Single Image with Implicit Representation Cheng Zhang, Zhaopeng C

TTS is a library for advanced Text-to-Speech generation. It's built on the latest research, was designed to achieve the best trade-off among ease-of-training, speed and quality. TTS comes with pretrained models, tools for measuring dataset quality and already used in 20+ languages for products and research projects.

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

CVPR2018-Baseline-PSNRplot This is my codes that can visualize the psnr image in testing videos. Future Frame Prediction for Anomaly Detection – A New

Pixel Art Reverse Image Search for OpenGameArt What does the final search look like? The final search with an example can be found here. It looks like

Py-FEAT is a suite for facial expressions (FEX) research written in Python. This package includes tools to detect faces, extract emotional facial expressions (e.g., happiness, sadness, anger), facial muscle movements (e.g., action units), and facial landmarks, from videos and images of faces, as well as methods to preprocess, analyze, and visualize FEX data.

This open source Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning.

Automated Penetration Testing Framework

bulbea "Deep Learning based Python Library for Stock Market Prediction and Modelling." Table of Contents Installation Usage Documentation Dependencies

geoplot: geospatial data visualization geoplot is a high-level Python geospatial plotting library. It's an extension to cartopy and matplotlib which m

🌍 xarray-spatial: Raster-Based Spatial Analysis in Python 📍 Fast, Accurate Python library for Raster Operations ⚡ Extensible with Numba ⏩ Scalable w

MovingPandas MovingPandas implements a Trajectory class and corresponding methods based on GeoPandas. Visit movingpandas.org for details! You can run

Welcome to the lidar package lidar is Python package for delineating the nested hierarchy of surface depressions in digital elevation models (DEMs). I

thunder scalable analysis of image and time series analysis in python Thunder is an ecosystem of tools for the analysis of image and time series data

untiler Utility to take a directory of {z}/{x}/{y}.(jpg|png) tiles, and stitch into a scenetiff (tif w/ exact merc tile bounds). Future versions will

GIPPY Gippy is a Python library for image processing of geospatial raster data. The core of the library is implemented as a C++ library, libgip, with

mahotas-imread: Read Image Files IO with images and numpy arrays. Mahotas-imread is a simple module with a small number of functions: imread Reads an

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

Pandana Pandana is a Python library for network analysis that uses contraction hierarchies to calculate super-fast travel accessibility metrics and sh

OSMnx OSMnx is a Python package that lets you download geospatial data from OpenStreetMap and model, project, visualize, and analyze real-world street

Lifelong Machine Learning with Deep Streaming Linear Discriminant Analysis This is a PyTorch implementation of the Deep Streaming Linear Discriminant

Python script that analyses news headline or body sentiment and returns the overall media sentiment of any given coin. It can take multiple coins an

saveddit is a bulk media downloader for reddit pip3 install saveddit Setting up authorization Register an application with Reddit Write down your clie

Single-Image-Reflection-Removal-Beyond-Linearity Paper Single Image Reflection Removal Beyond Linearity. Qiang Wen, Yinjie Tan, Jing Qin, Wenxi Liu, G

A Python Library for Document Layout Understanding

Apache Superset is a Data Visualization and Data Exploration Platform

Invertible Image Signal Processing This repository includes official codes for "Invertible Image Signal Processing (CVPR2021)". Figure: Our framework