Python Medical-physics Resources

Disclaimer This code is provided for research and development use only. This code is not intended for use in clinical decision-making or for any other

Viewer for MuJoCo in Python Interactive renderer to use with the official Python bindings for MuJoCo. Starting with version 2.1.2, MuJoCo comes with n

Causality-inspired Single-source Domain Generalization for Medical Image Segmentation Arxiv preprint Repository under construction. Might still be bug

MedMCQA MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question Answering A large-scale, Multiple-Choice Question Answe

Finite basis physics-informed neural networks (FBPINNs) This repository reproduces the results of the paper Finite Basis Physics-Informed Neural Netwo

PWF 2021 Física Sin Fronteras es un proyecto del Centro Internacional de Física Teórica (ICTP) en Trieste Italia. El ICTP es un centro dedicado a fome

CPDeform Code and data for paper Contact Points Discovery for Soft-Body Manipulations with Differentiable Physics at ICLR 2022 (Spotlight). @InProceed

medical by LAION This repository will be a summary and outlook on all our open, medical, AI advancements. See the medical-general channel in the medic

Project: Text Analysis - This project aims to conduct a text information retrieval and text mining on medical research publication regarding Covid19 -

On-the-Fly Adaptation Official Pytorch Code base for On-the-Fly Test-time Adaptation for Medical Image Segmentation Paper Introduction One major probl

solarSystemOrbitalSimulation graphical orbitational simulation of solar system planets with real values and physics implemented so you get a nice elli

PINN(s): Physics-Informed Neural Network(s) for von Karman vortex street This is

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL.

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation. Generally, MAS methods register multiple atlases, i.e., medical images with corresponding labels, to a target image;

A small python package that allows the user to look up common medical abbreviations.

A 2-dimensional physics engine written in Cairo

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation By Qing Xu, Wenting Duan and Na He Requirements pytorch==1.1

Posterior temperature optimized Bayesian models for inverse problems in medical imaging Max-Heinrich Laves*, Malte Tölle*, Alexander Schlaefer, Sandy

Medical natural language parsing and utility library A natural language medical

1st place solution in CCF BDCI 2021 ULSEG challenge This is the source code of the 1st place solution for ultrasound image angioma segmentation task (

Medical-Insurance-Project-OOP Python Classes: Medical Insurance Project using Object Oriented Programming Concepts Classes are an incredibly useful pr

SegTransVAE: Hybrid CNN - Transformer with Regularization for medical image segmentation This repo is the official implementation for SegTransVAE. Seg

miseval: a metric library for Medical Image Segmentation EVALuation The open-source and free to use Python package miseval was developed to establish

Combinatorial model of ligand-receptor binding The binding of ligands to receptors is the starting point for many import signal pathways within a cell

An Analysis on Ensemble Learning optimized Medical Image Classification with Deep Convolutional Neural Networks Novel and high-performance medical ima

Toward Model Interpretability in Medical NLP LING380: Topics in Computational Linguistics Final Project James Cross ([email protected]) and Daniel Kim

This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,

Introduction: X-Ray Report Generation This repository is for our EMNLP 2021 paper "Automated Generation of Accurate & Fluent Medical X-ray Reports". O

RATCHET: RAdiological Text Captioning for Human Examined Thoraxes RATCHET is a Medical Transformer for Chest X-ray Diagnosis and Reporting. Based on t

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

LeViT_UNet For medical image segmentation Our model is based on LeViT (https://github.com/facebookresearch/LeViT). You'd better gitclone its codes. Th

TransFuse This repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation Requirements Pytorch=1.6.0, 1.9.0 (=1.

Introduction This repository contains the modified caffe library and network architectures for our paper "Automated Melanoma Recognition in Dermoscopy

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Medical Data for Machine Learning This is a curated list of medical data for machine learning. This list is provided for informational purposes only,

HistoSeg : Quick attention with multi-loss function for multi-structure segmentation in digital histology images Histological Image Segmentation This

SI_EXPLAINER_tg_bot This bot is an assistant for medical professionals in interpreting the results of patient clustering. ABOUT This chatbot was devel

Simple_Physics_Engine An ongoing process to make a physics engine using python. I am using this goal as a way to learn python in and out. I am trying

MedViLL This repository provides the code for MedViLL(Medical Vision Language Learner). Our proposed architecture MedViLL is a single BERT-based model

NLP PubMed Medical Research Paper Abstract (Randomized Controlled Trial) A natural language processing model for sequential sentence classification in

pythonPhysics Basic Python physics library. Must have pygame installed. How to: Sketon program is included. for p in env.particles: pygame.draw.circle

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Patient Selection for Diabetes Drug Testing Project Overview EHR data is becoming a key source of real-world evidence (RWE) for the pharmaceutical ind

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

Cross-level Contrastive Learning and Consistency Constraint for Semi-supervised Medical Image Introduction This repository contains the PyTorch implem

Welcome to MadAnalysis 5 Outline What is MadAnalysis 5? Requirements Downloading

Machine Learning use case in the field of Healthcare. In this project MONAI and pytorch frameworks are used for 3D Liver segmentation.

This repository contains the code for the paper Localization and multifractal properties of the long-range Kitaev chain in the presence of an Aubry-André-Harper modulation.

Introduction This is an implementation of our paper Supervised 3D Pre-training on Large-scale 2D Natural Image Datasets for 3D Medical Image Analysis.

Repository for papers: Benchmark: Effect of Prior-based Losses on Segmentation Performance: A Benchmark Midl: A Surprisingly Effective Perimeter-based

ELD The implementation of CVPR 2020 (Oral) paper "A Physics-based Noise Formation Model for Extreme Low-light Raw Denoising" and its journal (TPAMI) v

CrowdCurio Time Series Annotator Library The CrowdCurio Time Series Annotation Library implements classification tasks for time series. Features Suppo

Medical Appointments No-shows Why do 20% of patients miss their scheduled appointments? A person makes a doctor appointment, receives all the instruct

What is it? Program for scientific research, which allows to simulate the phenomenon of self-focusing of different laser beams (including Gaussian, ri

Chinese Medical Entity Recognition Based on BERT+Bi-LSTM+CRF Step 1 I share the dataset on my google drive, please download the whole 'CCKS_2019_Task1

PySDM PySDM is a package for simulating the dynamics of population of particles. It is intended to serve as a building block for simulation systems mo

Auto Vaidya An open source solution for creating end-end web app for employing the power of deep learning in various clinical scenarios like implant d

The best way to use this material is by forking it by click the Fork button at the top, right corner. Then you will get your own copy to play with! Th

Medical-Insurance-Cost-Prediction-using-Machine-learning - Here in this project, I will use regression analysis to predict medical insurance cost for people in different regions, and based on several aspects like : Smoking, Number of children, BMI...etc.

Numerical Bric-a-Brac Collections of numerical techniques with Python and standard computational packages (Numpy, SciPy, Numba, Matplotlib ...). Diffe

PlasmaPy PlasmaPy is an open source, community-developed Python 3.7+ package for plasma science. PlasmaPy intends to be for plasma science what Astrop

PyCharge PyCharge is an open-source computational electrodynamics Python simulator that can calculate the electromagnetic fields and potentials genera

AI2-THOR Rearrangement Challenge Welcome to the 2021 AI2-THOR Rearrangement Challenge hosted at the CVPR'21 Embodied-AI Workshop. The goal of this cha

tight-binder Introduction General purpose tight-binding code for electronic structure calculations based on the Slater-Koster approximation. The code

Contrastive learning of global and local features for medical image segmentation with limited annotations The code is for the article "Contrastive lea

Medical-Image-Triage-and-Classification-System-Based-on-COVID-19-CT-and-X-ray-Sc

Characterizing possible failure modes in physics-informed neural networks This repository contains the PyTorch source code for the experiments in the

Package Continuous Integration Documentation About AbiPy is a python library to analyze the results produced by Abinit, an open-source program for the

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

FFA-IR The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark." The framework is inheri

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

NetKet NetKet is an open-source project delivering cutting-edge methods for the study of many-body quantum systems with artificial neural networks and

ComBind ComBind integrates data-driven modeling and physics-based docking for improved binding pose prediction and binding affinity prediction. Given

PyTASER PyTASER is a Python (3.9+) library and set of command-line tools for classifying spectral features in bulk materials, post-DFT. The goal of th

MISSFormer Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_add

CPPE - 5 CPPE - 5 (Medical Personal Protective Equipment) is a new challenging dataset with the goal to allow the study of subordinate categorization

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet). [New] Note that all the emails about the download permission o

Computational Methods for Physics & Astronomy Book version at: https://restrepo.github.io/ComputationalMethods by: Sebastian Bustamante 2014/2015 Dieg

MT-UNet Update 2021/11/19 Thank you for your interest in our work. We have uploaded the code of our MTUNet to help peers conduct further research on i

About The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficien

SciANN: Neural Networks for Scientific Computations SciANN is a Keras wrapper for scientific computations and physics-informed deep learning. New to S

Notice: Support for Python 3.6 will be dropped in v.0.2.1, please plan accordingly! Efficient and Scalable Physics-Informed Deep Learning Collocation-

NeuralPDE NeuralPDE.jl is a solver package which consists of neural network solvers for partial differential equations using scientific machine learni

Sparse Physics-based and Interpretable Neural Networks for PDEs This repository contains the code and manuscript for research done on Sparse Physics-b

Gala is a Python package for Galactic and gravitational dynamics. Documentation The documentation for Gala is hosted on Read the docs. Installation an

GebPy is a Python-based, open source tool for the generation of geological data of minerals, rocks and complete lithological sequences. The data can be generated randomly or with respect to user-defined constraints, for example a specific element concentration within minerals and rocks or the order of units within a complete lithological profile.

Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels The implementation of Hypernet-Ensemble Le

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

We tried to recreate this classic game using python physics libraries. The result is certainly hilarious but enjoyable. One of my very first physics application.

Simple pipeline for experimenting with radiomics features Installation git clone https://github.com/piotrekwoznicki/ClassyRadiomics.git cd classrad pi

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of thi

Quaternions in numpy This Python module adds a quaternion dtype to NumPy. The code was originally based on code by Martin Ling (which he wrote with he

Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation This repository contains the Pytorch implementation of the proposed

Fast implementation of the MuyGPs Gaussian process hyperparameter estimation algorithm MuyGPs is a GP estimation method that affords fast hyperparamet

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i