Python 3d-medical-imaging-segmentation Resources

How to scale hyperparameters for quickshift image segmentation Python code for the paper How to scale hyperparameters for quickshift image segmentatio

coldcuts coldcuts is an R package that allows you to draw and plot automatically segmentations from 3D voxel arrays. The name is inspired by one of It

This is part of the code to reproduce the results of the paper Do Neural Networks for Segmentation Understand Insideness? [pdf] by K. Villalobos (*),

Ensemble Learning Priors Driven Deep Unfolding for Scalable Snapshot Compressive Imaging [PyTorch] Abstract Snapshot compressive imaging (SCI) can rec

Pytorch Implementation of Auto-Compressing Subset Pruning for Semantic Image Segmentation Introduction ACoSP is an online pruning algorithm that compr

An Analysis on Ensemble Learning optimized Medical Image Classification with Deep Convolutional Neural Networks Novel and high-performance medical ima

OpenSurfaces Segmentation UI This repository contains the segmentation user interface from the OpenSurfaces project, extracted as a lightweight tool.

LabelImgPlus LabelImg is a graphical image annotation tool. This project is not updated with new functions now. More functions are supported with Labe

Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).

Semantic Segmentation Easy to use and customizable SOTA Semantic Segmentation models with abundant datasets in PyTorch Features Applicable to followin

Detic ros - A simple ROS wrapper for Detic instance segmentation using pre-trained dataset

FSRA This repository contains the dataset link and the code for our paper A Transformer-Based Feature Segmentation and Region Alignment Method For UAV

Privacy-Preserving Portrait Matting [ACM MM-21] This is the official repository of the paper Privacy-Preserving Portrait Matting. Jizhizi Li∗, Sihan M

[Project] Equivariant Imaging: Learning Beyond the Range Space Project about the

Labelbox Labelbox is the fastest way to annotate data to build and ship artificial intelligence applications. Use this github repository to help you s

Computer Vision Annotation Tool (CVAT) CVAT is free, online, interactive video and image annotation tool for computer vision. It is being used by our

f-BRS: Rethinking Backpropagating Refinement for Interactive Segmentation [Paper] [PyTorch] [MXNet] [Video] This repository provides code for training

Image Segmentation Evaluation Martin Keršner, [email protected] Evaluation metrics for image segmentation inspired by paper Fully Convolutional Netw

Semantic-Segmentation A list of all papers and resoureces on Semantic Segmentation. Dataset importance SemanticSegmentation_DL Some implementation of

really-awesome-semantic-segmentation A list of all papers on Semantic Segmentation and the datasets they use. This site is maintained by Holger Caesar

Toward Model Interpretability in Medical NLP LING380: Topics in Computational Linguistics Final Project James Cross ([email protected]) and Daniel Kim

A library for benchmarking, developing and deploying deep learning anomaly detection algorithms Key Features • Getting Started • Docs • License Introd

This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,

Introduction: X-Ray Report Generation This repository is for our EMNLP 2021 paper "Automated Generation of Accurate & Fluent Medical X-ray Reports". O

RATCHET: RAdiological Text Captioning for Human Examined Thoraxes RATCHET is a Medical Transformer for Chest X-ray Diagnosis and Reporting. Based on t

Accelerated Multi-Modal MR Imaging with Transformers Dependencies numpy==1.18.5 scikit_image==0.16.2 torchvision==0.8.1 torch==1.7.0 runstats==1.8.0 p

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

SegPC-2021 This is the official repository for the ISBI 2021 paper Transformer Assisted Convolutional Neural Network for Cell Instance Segmentation by

Retinal vessel segmentation based on GT-UNet Introduction This project is a retinal blood vessel segmentation code based on UNet-like Group Transforme

nnFormer: Interleaved Transformer for Volumetric Segmentation Code for paper "nnFormer: Interleaved Transformer for Volumetric Segmentation ". Please

LeViT_UNet For medical image segmentation Our model is based on LeViT (https://github.com/facebookresearch/LeViT). You'd better gitclone its codes. Th

TransFuse This repo holds the code of TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation Requirements Pytorch=1.6.0, 1.9.0 (=1.

Instance Semantic Segmentation List This repository contains lists of state-or-art instance semantic segmentation works. Papers and resources are list

Awesome Semantic Segmentation List of awesome things around semantic segmentation 🎉 Semantic segmentation is a computer vision task in which we label

Introduction This repository contains the modified caffe library and network architectures for our paper "Automated Melanoma Recognition in Dermoscopy

Lung Segmentation (2D) Repository features UNet inspired architecture used for segmenting lungs on chest X-Ray images. Demo See the application of the

Cervix ROI Segmentation Using U-NET Overview This code illustrate how to segment the ROI in cervical images using U-NET. The ROI here meant to include

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Shield: This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Deep Learning to Improve Breast

Detection-aided liver lesion segmentation Here we present the implementation in TensorFlow of our work about liver lesion segmentation accepted in the

Using Convolutional Neural Networks (CNN) for Semantic Segmentation of Breast Cancer Lesions (BRCA). Master's thesis documents. Bibliography, experiments and reports.

Medical Data for Machine Learning This is a curated list of medical data for machine learning. This list is provided for informational purposes only,

This repo has been deprecated because whole things are re-implemented by using Chainer and I did refactoring for many codes. So please check this newe

Raster Vision is an open source Python framework for building computer vision models on satellite, aerial, and other large imagery sets (including obl

Note: Robosat is neither maintained not actively developed any longer by Mapbox. See this issue. The main developers (@daniel-j-h, @bkowshik) are no l

Awesome Satellite Imagery Datasets List of aerial and satellite imagery datasets with annotations for computer vision and deep learning. Newest datase

Clockwork Convnets for Video Semantic Segmentation This is the reference implementation of arxiv:1608.03609: Clockwork Convnets for Video Semantic Seg

FCN_MSCOCO_Food_Segmentation Simple keras FCN Encoder/Decoder model for MS-COCO (food subset) segmentation Input data: [http://mscoco.org/dataset/#ove

NNProject - DeepMask This is a Keras-based Python implementation of DeepMask- a complex deep neural network for learning object segmentation masks. Th

TF Image Segmentation: Image Segmentation framework The aim of the TF Image Segmentation framework is to provide/provide a simplified way for: Convert

Seg-Torch for Image Segmentation with Torch This work was sparked by my personal research on simple segmentation methods based on deep learning. It is

ademxapp Visual applications by the University of Adelaide In designing our Model A, we did not over-optimize its structure for efficiency unless it w

Simultaneous Detection and Segmentation This is code for the ECCV Paper: Simultaneous Detection and Segmentation Bharath Hariharan, Pablo Arbelaez,

DecoupledNet: Decoupled Deep Neural Network for Semi-supervised Semantic Segmentation Created by Seunghoon Hong, Hyeonwoo Noh and Bohyung Han at POSTE

Build status: master (production branch): develop (development branch): Welcome to the CN24 GitHub repository! CN24 is a complete semantic segmentatio

A collection of semantic image segmentation models implemented in TensorFlow. Contains data-loaders for the generic and medical benchmark datasets.

Segment axon and myelin from microscopy data using deep learning. Written in Python. Using the TensorFlow framework. Based on a convolutional neural network architecture. Pixels are classified as either axon, myelin or background.

Segmentation Training Pipeline This package is a part of Musket ML framework. Reasons to use Segmentation Pipeline Segmentation Pipeline was developed

Taking A Closer Look at Domain Shift: Category-level Adversaries for Semantics Consistent Domain Adaptation (CVPR2019) This is a pytorch implementatio

Won-Dong Jang and Chang-Su Kim, Interactive Image Segmentation via Backpropagating Refinement Scheme, CVPR 2019

[CVPR19] DeepCO3: Deep Instance Co-segmentation by Co-peak Search and Co-saliency (Oral paper) Authors: Kuang-Jui Hsu, Yen-Yu Lin, Yung-Yu Chuang PDF:

Equipped customers with insights about their EVs Hourly energy consumption and helped predict future charging behavior using LSTM model. Designed sample dashboard with insights and recommendation for customers.

The project's goal is to show a real world application of image segmentation using k means algorithm

HistoSeg : Quick attention with multi-loss function for multi-structure segmentation in digital histology images Histological Image Segmentation This

TGS Salt Identification Challenge This is an open solution to the TGS Salt Identification Challenge. Note Unfortunately, we can no longer provide supp

Airbus Ship Detection Challenge This is an open solution to the Airbus Ship Detection Challenge. Our goals We are building entirely open solution to t

Self-Supervised Anomaly Segmentation Intorduction This is a PyToch implementation of A Novel Self-supervised Learning Task Designed for Anomaly Segmen

SI_EXPLAINER_tg_bot This bot is an assistant for medical professionals in interpreting the results of patient clustering. ABOUT This chatbot was devel

ocrd_detectron2 OCR-D wrapper for detectron2 based segmentation models Introduction Installation Usage OCR-D processor interface ocrd-detectron2-segm

PyTracking A general python framework for visual object tracking and video object segmentation, based on PyTorch. 📣 Two tracking/VOS papers accepted

Bird's-Eye-View Panoptic Segmentation Using Monocular Frontal View Images This r

MedViLL This repository provides the code for MedViLL(Medical Vision Language Learner). Our proposed architecture MedViLL is a single BERT-based model

T2-Hyp-Segmentor This repo is for segmentation of T2 hyp regions in gliomas. By downloading the model from here you can use it to segment your T2w ima

An official PyTorch Implementation of Boundary-aware Self-supervised Learning for Video Scene Segmentation (BaSSL)

End-to-end Customer Segmentation Project Note: This project is in progress. Tools Used in This Project Prefect: Orchestrate workflows hydra: Manage co

GCNet for Object Detection By Yue Cao, Jiarui Xu, Stephen Lin, Fangyun Wei, Han Hu. This repo is a official implementation of "GCNet: Non-local Networ

EMANet News The bug in loading the pretrained model is now fixed. I have updated the .pth. To use it, download it again. EMANet-101 gets 80.99 on the

NLP PubMed Medical Research Paper Abstract (Randomized Controlled Trial) A natural language processing model for sequential sentence classification in

Unet_erythema_detection A basic neural network for image segmentation. 前期准备 1.在logs文件夹中下载h5权重文件，百度网盘链接在logs文件夹中 2.将所有原图 放置在“/dataset_1/JPEGImages/”文件夹

YouTokenToMe YouTokenToMe is an unsupervised text tokenizer focused on computational efficiency. It currently implements fast Byte Pair Encoding (BPE)

BRATS 2021 Solution For Segmentation Task This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmenta

BraTS2020 A Light & Scalable Solution to BraTS2020 | Medical Brain Tumor Segmentation (2D Segmentation) Developed the segmentation models for segregat

Best-practice-for-network-segmentation What is this? This project was created to publish the best practices for segmentation of the corporate network

GLNet for Memory-Efficient Segmentation of Ultra-High Resolution Images Collaborative Global-Local Networks for Memory-Efficient Segmentation of Ultra-

Instance segmentation by jointly optimizing spatial embeddings and clustering bandwidth This codebase implements the loss function described in: Insta

LEDNet: A Lightweight Encoder-Decoder Network for Real-time Semantic Segmentation Table of Contents: Introduction Project Structure Installation Datas

LightNet++ !!!New Repo.!!! ⇒ EfficientNet.PyTorch: Concise, Modular, Human-friendly PyTorch implementation of EfficientNet with Pre-trained Weights !!

Proposal, Tracking and Segmentation (PTS): A Cascaded Network for Video Object Segmentation By Qiang Zhou*, Zilong Huang*, Lichao Huang, Han Shen, Yon

Show, Match and Segment: Joint Weakly Supervised Learning of Semantic Matching and Object Co-segmentation This repository contains the source code for

MaskTrackRCNN for video instance segmentation Introduction This repo serves as the official code release of the MaskTrackRCNN model for video instance

Deep Watershed Transform Performs instance level segmentation detailed in the following paper: Min Bai and Raquel Urtasun, Deep Watershed Transformati

FusionNet_Pytorch FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics Requirements Pytorch 0.1.11 Pyt

Fully Connected DenseNets for Semantic Segmentation Fully Connected DenseNet for Image Segmentation implementation of the paper The One Hundred Layers

OBG-FCN This repository is to reproduce the implementation of 'Object Boundary Guided Semantic Segmentation' in http://arxiv.org/abs/1603.09742 Object

Segmentation from Natural Language Expressions This repository contains the code for the following paper: R. Hu, M. Rohrbach, T. Darrell, Segmentation

Segmentation from Natural Language Expressions This repository contains the Caffe reimplementation of the following paper: R. Hu, M. Rohrbach, T. Darr

TransferNet: Learning Transferrable Knowledge for Semantic Segmentation with Deep Convolutional Neural Network Created by Seunghoon Hong, Junhyuk Oh,

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Patient Selection for Diabetes Drug Testing Project Overview EHR data is becoming a key source of real-world evidence (RWE) for the pharmaceutical ind