Python 3d-medical-imaging-segmentation Resources

Few-shot Deep HDR Deghosting This repository contains code and pretrained models for our paper: Self-Gated Memory Recurrent Network for Efficient Scal

Enet This is a realtime segmentation net with almost 22 fps on GTX1080 ti, and the model size is very small with only 28M. This repo contains the infe

Efficient networks for Computer Vision This repo contains source code of our work on designing efficient networks for different computer vision tasks:

Bonnet: An Open-Source Training and Deployment Framework for Semantic Segmentation in Robotics. By Andres Milioto @ University of Bonn. (for the new P

SPCL SPCL: A New Framework for Domain Adaptive Semantic Segmentation via Semantic Prototype-based Contrastive Learning Update on 2021/11/25: ArXiv Ver

CodedCam Coded Illumination for Improved Lensless Imaging Paper | Supplementary results | Data and Code are available. Coded illumination for improved

Efficient Multi-Organ Segmentation Using SpatialConfiguartion-Net with Low GPU Memory Requirements Our implementation used for the MICCAI 2021 FLARE C

Codebase for Amodal Segmentation through Out-of-Task andOut-of-Distribution Generalization with a Bayesian Model

BlenderProc2 A procedural Blender pipeline for photorealistic rendering. Documentation | Tutorials | Examples | ArXiv paper | Workshop paper Features

PointCNN: Convolution On X-Transformed Points Created by Yangyan Li, Rui Bu, Mingchao Sun, Wei Wu, Xinhan Di, and Baoquan Chen. Introduction PointCNN

The repository contains the implementations for Hyperspectral Image Classification -- Traditional to Deep Models: A Survey for Future Prospects. Model

LaneNet-Lane-Detection Use tensorflow to implement a Deep Neural Network for real time lane detection mainly based on the IEEE IV conference paper "To

Alfred Alfred is command line tool for deep-learning usage. if you want split an video into image frames or combine frames into a single video, then a

Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make

Learning to Disambiguate Strongly Interacting Hands via Probabilistic Per-Pixel Part Segmentation [3DV 2021 Oral] Learning to Disambiguate Strongly In

BANA This is the implementation of the paper "Background-Aware Pooling and Noise-Aware Loss for Weakly-Supervised Semantic Segmentation". For more inf

Learning Pixel-level Semantic Affinity with Image-level Supervision This code is deprecated. Please see https://github.com/jiwoon-ahn/irn instead. Int

Welcome to labelpix 👋 labelpix is a graphical image labeling interface for drawing bounding boxes. 🏠 Homepage Install pip install -r requirements.tx

Boundary-Guided-Context-Aggregation Boundary Guided Context Aggregation for Semantic Segmentation Haoxiang Ma, Hongyu Yang, Di Huang In BMVC'2021 Pape

Numbering permanent and deciduous teeth via deep instance segmentation in panoramic X-rays In this repo, you will find the instructions on how to requ

PCAN for Multiple Object Tracking and Segmentation This is the offical implementation of paper PCAN for MOTS. We also present a trailer that consists

CelebAMask-HQ [Paper] [Demo] CelebAMask-HQ is a large-scale face image dataset that has 30,000 high-resolution face images selected from the CelebA da

RandLA-Net: Efficient Semantic Segmentation of Large-Scale Point Clouds (CVPR 2020) This is the official implementation of RandLA-Net (CVPR2020, Oral

AutoML for Image Semantic Segmentation Currently this repo contains the only working open-source implementation of Auto-Deeplab which, by the way out-

Region-aware Contrastive Learning for Semantic Segmentation, ICCV 2021 Abstract Recent works have made great success in semantic segmentation by explo

Introduction English | 简体中文 MMOCR is an open-source toolbox based on PyTorch and mmdetection for text detection, text recognition, and the correspondi

English | 简体中文 Documentation: https://mmtracking.readthedocs.io/ Introduction MMTracking is an open source video perception toolbox based on PyTorch.

ICCVW21-TradiCV-Survey-of-LiDAR-Cluster Motivation In contrast to popular end-to-end deep learning LiDAR panoptic segmentation solutions, we propose a

R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod

FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

Semantic Meshes A framework for annotating 3D meshes using the predictions of a 2D semantic segmentation model. Paper If you find this framework usefu

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

PyTorch Semantic Segmentation Introduction This repository is a PyTorch implementation for semantic segmentation / scene parsing. The code is easy to

Complete-IoU Loss and Cluster-NMS for Improving Object Detection and Instance Segmentation. Our paper is accepted by IEEE Transactions on Cybernetics

DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is

Detectron2 trained on PubLayNet dataset This repo contains the training configurations, code and trained models trained on PubLayNet dataset using Det

BMaskR-CNN This code is developed on Detectron2 Boundary-preserving Mask R-CNN ECCV 2020 Tianheng Cheng, Xinggang Wang, Lichao Huang, Wenyu Liu Video

BiMix The code for Bi-Mix: Bidirectional Mixing for Domain Adaptive Nighttime Semantic Segmentation arxiv Framework: visualization results: Requiremen

ClevrTex This repository contains dataset generation code for ClevrTex benchmark from paper: ClevrTex: A Texture-Rich Benchmark for Unsupervised Multi

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat

Introduction The field of connectomics aims to reconstruct the wiring diagram of the brain by mapping the neural connections at the level of individua

SegDistill: Toolbox for Knowledge Distillation on Semantic Segmentation Networks This repo contains the supported code and configuration files for Seg

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

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MIT Deep Learning This repository is a collection of tutorials for MIT Deep Learning courses. More added as courses progress. Tutorial: Deep Learning

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

DGPNet - Dense Gaussian Processes for Few-Shot Segmentation Welcome to the public repository for DGPNet. The paper is available at arxiv: https://arxi

ShallowSeismicImaging Tools to imaging the shallow seismic structure, above 10 km, based on the ZH ratio measured from the ambient seismic noise, and

SAPNet This repository contains the official Pytorch implementation of the paper: "SAPNet: Segmentation-Aware Progressive Network for Perceptual Contr

Point-Unet This is an unofficial implementation of the MICCAI 2021 paper Point-Unet: A Context-Aware Point-Based Neural Network for Volumetric Segment

UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf

Code for paper "Context-self contrastive pretraining for crop type semantic segmentation" Setting up a python environment Follow the instruction in ht

iterseg napari plugin for iteratively improving unet-watershed segmentation This napari plugin was generated with Cookiecutter using @napari's cookiec

SimpleDet - A Simple and Versatile Framework for Object Detection and Instance Recognition Major Features FP16 training for memory saving and up to 2.

Computer Vision Annotation Tool (CVAT) CVAT is free, online, interactive video and image annotation tool for computer vision. It is being used by our

JBHI-Pytorch This repository contains a reference implementation of the algorithms described in our paper "Self-supervised Multi-modal Hybrid Fusion N

AOS: Airborne Optical Sectioning Airborne Optical Sectioning (AOS) is a wide synthetic-aperture imaging technique that employs manned or unmanned airc

Welcome to Official repository of deepflash2 - a deep-learning pipeline for segmentation of ambiguous microscopic images. Quick Start in 30 seconds se

ObjProp Introduction This is the official implementation of the paper "Object Propagation via Inter-Frame Attentions for Temporally Stable Video Insta

D²Conv3D: Dynamic Dilated Convolutions for Object Segmentation in Videos This repository contains the implementation for "D²Conv3D: Dynamic Dilated Co

NoCodeSeg: Deep segmentation made easy! This is the official repository for the manuscript "Code-free development and deployment of deep segmentation

FASA: Feature Augmentation and Sampling Adaptation for Long-Tailed Instance Segmentation (ICCV 2021) This repository contains the implementation of th

[CVPRW 2021] - Object Propagation via Inter-Frame Attentions for Temporally Stable Video Instance Segmentation

GSCNN This is the official code for: Gated-SCNN: Gated Shape CNNs for Semantic Segmentation Towaki Takikawa, David Acuna, Varun Jampani, Sanja Fidler

PortraitNet Code for the paper "PortraitNet: Real-time portrait segmentation network for mobile device". @ CAD&Graphics 2019 Introduction We propose a

FastFCN: Rethinking Dilated Convolution in the Backbone for Semantic Segmentation [Project] [Paper] [arXiv] [Home] Official implementation of FastFCN:

PyTorch implementation of UNet++ (Nested U-Net) This repository contains code for a image segmentation model based on UNet++: A Nested U-Net Architect

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Extreme Lightwegith Portrait Segmentation Please go to this link to download code Requirements python 3 pytorch = 0.4.1 torchvision==0.2.1 opencv-pyt

DFANet This repo is an unofficial pytorch implementation of DFANet:Deep Feature Aggregation for Real-Time Semantic Segmentation log 2019.4.16 After 48

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

ConvCRF This repository contains the reference implementation for our proposed Convolutional CRFs in PyTorch (Tensorflow planned). The two main entry-

UPSNet: A Unified Panoptic Segmentation Network Introduction UPSNet is initially described in a CVPR 2019 oral paper. Disclaimer This repository is te

High-resolution networks and Segmentation Transformer for Semantic Segmentation Branches This is the implementation for HRNet + OCR. The PyTroch 1.1 v

Fast-SCNN: Fast Semantic Segmentation Network Unofficial implementation of the model architecture of Fast-SCNN. Real-time Semantic Segmentation and mo

CCNet: Criss-Cross Attention for Semantic Segmentation Paper Links: Our most recent TPAMI version with improvements and extensions (Earlier ICCV versi

ESPNet: Efficient Spatial Pyramid of Dilated Convolutions for Semantic Segmentation This repository contains the source code of our paper, ESPNet (acc

face-parsing.PyTorch Contents Training Demo References Training Prepare training data: -- download CelebAMask-HQ dataset -- change file path in the pr

TorchSeg This project aims at providing a fast, modular reference implementation for semantic segmentation models using PyTorch. Highlights Modular De

Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement

ShelfNet-lightweight for paper (ShelfNet for fast semantic segmentation) This repo contains implementation of ShelfNet-lightweight models for real-tim

Dual Attention Network for Scene Segmentation(CVPR2019) Jun Fu, Jing Liu, Haijie Tian, Yong Li, Yongjun Bao, Zhiwei Fang,and Hanqing Lu Introduction W

Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor

TuSimple-DUC by Panqu Wang, Pengfei Chen, Ye Yuan, Ding Liu, Zehua Huang, Xiaodi Hou, and Garrison Cottrell. Introduction This repository is for Under

Learning to Adapt Structured Output Space for Semantic Segmentation Pytorch implementation of our method for adapting semantic segmentation from the s

Real-time Semantic Segmentation Comparative Study The repository contains the official TensorFlow code used in our papers: RTSEG: REAL-TIME SEMANTIC S

Pixel Transposed Convolutional Networks Created by Hongyang Gao, Hao Yuan, Zhengyang Wang and Shuiwang Ji at Texas A&M University. Introduction Pixel

Semantic Segmentation using Adversarial Networks Requirements Chainer (1.23.0) Differences Use of FCN-VGG16 instead of Dilated8 as Segmentor. Caution

Segmentation-Aware Convolutional Networks Using Local Attention Masks [Project Page] [Paper] Segmentation-aware convolution filters are invariant to b

KittiSeg KittiSeg performs segmentation of roads by utilizing an FCN based model. The model achieved first place on the Kitti Road Detection Benchmark

Laplacian Pyramid Reconstruction and Refinement for Semantic Segmentation This repository contains code and models for the method described in: Golnaz

Full-Resolution Residual Networks (FRRN) This repository contains code to train and qualitatively evaluate Full-Resolution Residual Networks (FRRNs) a

Tensorflow implementation of Learning Deconvolution Network for Semantic Segmentation. Install Instructions Works with tensorflow 1.11.0 and uses the

DeconvNet: Learning Deconvolution Network for Semantic Segmentation Created by Hyeonwoo Noh, Seunghoon Hong and Bohyung Han at POSTECH Acknowledgement