Python Biological-data-analysis Resources

G-PATE This is the official code base for our NeurIPS 2021 paper: "G-PATE: Scalable Differentially Private Data Generator via Private Aggregation of T

A deep neural network (DNN) has achieved great success in many machine learning tasks by virtue of its high expressive power. However, its prediction can be easily biased to undesirable features, which are not essential for solving the target task and are even imperceptible to a human, thereby resulting in poor generalization

Equi-RC Equivariant layers for RC-complement symmetry in DNA sequence data This is a repository that implements the layers as described in "Reverse-Co

Data-Preserved Script allowing to blur the most sensitive information on images. Prerequisites Before you begin, ensure you have met the following req

Introduction This repository is the official PyTorch implementation of Data-free Knowledge Distillation for Object Detection, WACV 2021. Data-free Kno

Sign data using symmetric-key algorithm encryption. Validate signed data and identify possible validation errors. Uses sha-(1, 224, 256, 385 and 512)/hmac for signature encryption. Custom hash algorithms are allowed. Useful shortcut functions for signing (and validating) dictionaries and URLs.

MatrixProfile MatrixProfile is a Python 3 library, brought to you by the Matrix Profile Foundation, for mining time series data. The Matrix Profile is

An Open Source Project from the Data to AI Lab, at MIT MLPrimitives Pipelines and primitives for machine learning and data science. Documentation: htt

Instagram Scraper An utility library to scrape data from Instagram hassle-free Go to the website » View Demo · Report Bug · Request Feature About The

tradingView-API tradingview socket api for fetching real time prices. How to run git clone https://github.com/mohamadkhalaj/tradingView-API.git cd tra

This repository is used to provide data to zzhack, but you don't have to care about anything, just write your thinking down, and you can see your thinking is rendered in zzhack perfectly

Deceive D: Adaptive Pseudo Augmentation for GAN Training with Limited Data (NeurIPS 2021) This repository provides the official PyTorch implementation

CRISP: Critical Path Analysis of Microservice Traces This repo contains code to compute and present critical path summary from Jaeger microservice tra

Scrapping the data from each page of biocides listed on the BAUA website into a csv file

VaccineEfficiency 💉 An analysis of the efficiency of the COVID-19 vaccine 3 Methods 1️⃣ Compare country's vaccination data to number of day- to-day c

Factorized Fourier Neural Operators This repository contains the code to reproduce the results in our NeurIPS 2021 ML4PS workshop paper, Factorized Fo

OmiTrans Please also have a look at our multi-omics multi-task DL freamwork 👀 : OmiEmbed The FIRST GANs-based omics-to-omics translation framework Xi

COIN Dataset COIN is the currently largest dataset for comprehensive instruction video analysis. It contains 11,827 videos of 180 different tasks (i.e

Searching to Learn with Instructional Scaffolding This is the data and analysis code for the paper "Searching to Learn with Instructional Scaffolding"

Description The source code and data for my paper titled Linguistic Knowledge in Data Augmentation for Natural Language Processing: An Example on Chin

A program that analyzes data from inertia measurement units installed in aircraft and generates g-exceedance curves.

qMem Datawrangler This script processes output of qMem measurement software into an Origin ® compatible *.csv files and matplotlib graphs to quickly v

Deploy Django in Production FTA project implementing containerization of Django Web Framework into Docker to be placed into Azure Container Services a

LAMA: LAnguage Model Analysis LAMA is a probe for analyzing the factual and commonsense knowledge contained in pretrained language models. The dataset

SynthText Code for generating synthetic text images as described in "Synthetic Data for Text Localisation in Natural Images", Ankush Gupta, Andrea Ved

🛰️ Scripts démontrant l'utilisation de l'imagerie RADARSAT-1 à partir d'un seau AWS | 🛰️ Scripts demonstrating the use of RADARSAT-1 imagery from an AWS bucket

Data and evaluation code for the paper WikiNEuRal: Combined Neural and Knowledge-based Silver Data Creation for Multilingual NER. @inproceedings{tedes

Home-Assistant Python Scripts Python Scripts for Home-Assistant (http://www.home-assistant.io) Zyxel-NSA310-Home-Assistant Monitoring This is a python

Welcome to the CSIRO Face Analysis SDK. Documentation for the SDK can be found in doc/documentation.html. All code in this SDK is provided according t

PENecro This project is based on "Enabling dynamic analysis of Legacy Embedded Systems in full emulated environment", published on hardwear.io USA 202

What is this This is a real world application of a Recurrent Neural Network on a binary classification of time series data. This project includes data

APIlocal_dbAWS_RDS Disclaimer! All data used is for educational purposes only. ETL pipeline diagram. Aim of project By creating a fully working pipe

Ping Pong Project The objective of this project was to determine the moment of impact of the ball with the ground. To do this, we used different model

tsflex is a toolkit for flexible time series processing & feature extraction, that is efficient and makes few assumptions about sequence data. Useful

DuBE: Duple-balanced Ensemble Learning from Skewed Data "Towards Inter-class and Intra-class Imbalance in Class-imbalanced Learning" (IEEE ICDE 2022 S

Fast mesh denoising with data driven normal filtering using deep variational autoencoders This is an implementation for the paper entitled "Fast mesh

IMBENS: class-imbalanced ensemble learning in Python. Links: [Documentation] [Gallery] [PyPI] [Changelog] [Source] [Download] [知乎/Zhihu] [中文README] [a

Variational Gibbs inference (VGI) This repository contains the research code for Simkus, V., Rhodes, B., Gutmann, M. U., 2021. Variational Gibbs infer

Deep Learning Emotion decoding using EEG data from Autism individuals This repository includes the python and matlab codes using for processing EEG 2D

Inside Out Visual Place Recognition This repository contains code and instructions to reproduce the results for the Inside Out Visual Place Recognitio

Traditional Chinese Text Recognition Dataset: Synthetic Dataset and Labeled Data Authors: Yi-Chang Chen, Yu-Chuan Chang, Yen-Cheng Chang and Yi-Ren Ye

Enhancing Aspect-Based Sentiment Analysis with Supervised Contrastive Learning. This repo contains the PyTorch code and implementation for the paper E

Mongo Mangler The mongo-mangler tool is a lightweight Python utility, which you can run from a low-powered machine to execute a high throughput data i

tinder_likes_data Gathering data of Likes Sent on Tinder within the past 7 days. Versions November 25th, 2021 - Functionality to get the name and age

Biblioteca em Python que coleta informações cadastrais de empresas do Brasil (CNPJ) obtidas de fontes oficiais (Receita Federal) e exporta para um formato legível por humanos (CSV ou JSON).

🔍 E-Commerce recommender demo 🔍 This is a simple stream setup that uses Memgraph to ingest real-time data from a simulated online store. Data is str

Object mapping, and more, for Redis and Python Redis OM Python makes it easy to model Redis data in your Python applications. Redis OM Python | Redis

BlenderProc2 A procedural Blender pipeline for photorealistic rendering. Documentation | Tutorials | Examples | ArXiv paper | Workshop paper Features

Enhancing Aspect-Based Sentiment Analysis with Supervised Contrastive Learning. Enhancing Aspect-Based Sentiment Analysis with Supervised Contrastive

Douglas-Quaid Project Open source software for image correlation, distance and analysis. Strongly related to : Carl-Hauser Problem statement (@CIRCL)

Hydrosphere examples This repo contains demo scenarios and pre-trained models to show Hydrosphere capabilities. Data and artifacts management Some mod

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

Steps to run = Download the cora dataset from this link : https://linqs.soe.ucsc.edu/data unzip the files in the folder input/cora cd code python eda

valves Warning: the project is very much work in progress. Valves is a collection of functions for your data .pipe()-lines. This project aimes to host

CinnaMon is a Python library which offers a number of tools to detect, explain, and correct data drift in a machine learning system

Geospatial Data API in Django Resonant GeoData (RGD) is a series of Django applications well suited for cataloging and searching annotated geospatial

Python asymptotic Partial Directed Coherence and Directed Coherence estimation package for brain connectivity analysis. Free software: MIT license Doc

yahoostock A package designed to scrape data from Yahoo Finance. Installation The most simple installation method is through PIP. pip install yahoosto

MMDA - multimodal document analysis

awesome-causality-algorithms An index of algorithms for learning causality with data. Please cite our survey paper if this index is helpful. @article{

Synapse Machine Learning SynapseML (previously MMLSpark) is an open source library to simplify the creation of scalable machine learning pipelines. Sy

Qlib is an AI-oriented quantitative investment platform, which aims to realize the potential, empower the research, and create the value of AI technologies in quantitative investment.

PyConverse Let me try first Installation pip install pyconverse Usage Please try this notebook that demos the core functionalities: basic usage noteb

Lazarus Research This repository publishes analysis reports and analysis tools for Operation Dream Job and Operation JTrack for Lazarus. Tools Python

Automatically download the cwru data set, and then divide it into training data set and test data set.自动下载cwru数据集，然后分训练数据集和测试数据集

We're the hackathon leftovers, but we are Too Good To Go ;-). A repo by Lukas Schubotz and Raymon van Dinter. We aim to improve current data preprocessing for FTM's WOB data to analyze Shell and Dutch Governmental contacts.

Sea Level Predictor Assignment You will anaylize a dataset of the global average sea level change since 1880. You will use the data to predict the sea

ltempy ltempy is a set of tools for Lorentz TEM data analysis, simulation, and presentation. Features Single Image Transport of Intensity Equation (SI

OmiTrans Please also have a look at our multi-omics multi-task DL freamwork 👀 : OmiEmbed The FIRST GANs-based omics-to-omics translation framework Xi

Finds, downloads, parses, and standardizes public bikeshare data into a standard pandas dataframe format.

NYCT-GTFS - Real-time NYC subway data parsing for humans This python library provides a human-friendly, native python interface for dealing with the N

Emotional-Support-Conversation Copyright © 2021 CoAI Group, Tsinghua University. All rights reserved. Data and codes are for academic research use onl

Aspect-Based-Sentiment-Analysis A paper list for aspect based sentiment analysis. Survey [IEEE-TAC-20]: Issues and Challenges of Aspect-based Sentimen

Apocalypse Status Dashboard Purpose Climate change and resource depletion are grave long-term dangers. The code in this repository will pull data from

Compilation of resources and insights that helped me on my journey to data scientist

Everything Tech Resources & Projects About The Project Coming from an engineering background and looking to up skill yourself on a new field can be di

This repro introcudes the Waveform Analysis Language (WAL). The initial paper on WAL will appear at ASPDAC'22 and can be downloaded here: https://www.

This is a Python program to Entity Linking by processing WARC files. We recognize entities from web pages and link them to a Knowledge Base(Wikidata).

timm_custom Description In the case of your data having only 1 channel while want to use timm models (with or without pretrained weights), run the fol

BBOX Problem definition: The spatial data users often are required to obtain the coordinates of the minimum bounding box of vector and raster data in

Cookiecutter Data Science A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Project homepage

PandasVault ⁠— Advanced Pandas Functions and Code Snippets The only Pandas utility package you would ever need. It has no exotic external dependencies

PandaPy "I came across PandaPy last week and have already used it in my current project. It is a fascinating Python library with a lot of potential to

A Python API for Intelligent Visual Discovery Lux is a Python library that facilitate fast and easy data exploration by automating the visualization a

Intel(R) Extension for Scikit-learn* Installation | Documentation | Examples | Support | FAQ With Intel(R) Extension for Scikit-learn you can accelera

Find relative paths from a project root directory Finding project directories in Python (data science) projects, just like there R here and rprojroot

Intake: A general interface for loading data Intake is a lightweight set of tools for loading and sharing data in data science projects. Intake helps

Mars is a tensor-based unified framework for large-scale data computation which scales numpy, pandas, scikit-learn and many other libraries. Documenta

Unmaintained Package Notice Unfortunately, and due to lack of resources, the Blosc Development Team is unable to maintain this package anymore. During

An Open Source Project from the Data to AI Lab, at MIT Metrics for Synthetic Data Generation Projects Website: https://sdv.dev Documentation: https://

NVTabular is a feature engineering and preprocessing library for tabular data designed to quickly and easily manipulate terabyte scale datasets used to train deep learning based recommender systems.

"Dataflow variables are spectacularly expressive in concurrent programming" Henri E. Bal , Jennifer G. Steiner , Andrew S. Tanenbaum Quick overview Ne

Purpose: This is integrate bus data from a variety of sources such as: csv, json api, sensor data ... into Relational Database (batch processing and r

dataset-division-to-train-val-test-python python script for dividing image data to train test and val If you have an image dataset in the following st

Our Data Data repo for one-among.us File Structure Directory /people/userid/: Data for a specific person info.json5: Profile information page.md: Pr

This library offers powerful mock data generation capabilities for pydantic based models. It can also be used with other libraries that use pydantic as a foundation, for example SQLModel, Beanie and ormar.

Procedural-Maze-Generator-Algorithms Check out my youtube channel : Auctux Ressources Thanks to Jamis Buck Book : Mazes for programmers Requirements P

PyDS CLI Helping you manage your data science projects sanely. Requirements Anaconda/Miniconda/Miniforge/Mambaforge (Mambaforge recommended!) git on y

Data Lake Demo Source code for video demonstration detailed in the post, Building a Simple Data Lake on AWS . Build a simple data lake on AWS using a

MultiModal-Collaborative (MMC) Learning Framework for integrating RGB and Thermal spectral modalities This is the official code for NeurIPS 2021 Machi