68 Repositories
Python cluster-mutations Libraries
SARS-Cov-2 Recombinant Finder for fasta sequences
Sc2rf - SARS-Cov-2 Recombinant Finder Pronounced: Scarf What's this? Sc2rf can search genome sequences of SARS-CoV-2 for potential recombinants - new
Databricks Certified Associate Spark Developer preparation toolkit to setup single node Standalone Spark Cluster along with material in the form of Jupyter Notebooks.
Databricks Certification Spark Databricks Certified Associate Spark Developer preparation toolkit to setup single node Standalone Spark Cluster along
Deploy a simple Multi-Node Clickhouse Cluster with docker-compose in minutes.
Simple Multi Node Clickhouse Cluster I hate those single-node clickhouse clusters and manually installation, I mean, why should we: Running multiple c
Distribute PySPI jobs across a PBS cluster
Distribute PySPI jobs across a PBS cluster This repository contains scripts for distributing PySPI jobs across a PBS-type cluster. Each job will conta
Helperpod - A CLI tool to run a Kubernetes utility pod with pre-installed tools that can be used for debugging/testing purposes inside a Kubernetes cluster
Helperpod is a CLI tool to run a Kubernetes utility pod with pre-installed tools that can be used for debugging/testing purposes inside a Kubernetes cluster.
Checkmk kube agent - Checkmk Kubernetes Cluster and Node Collectors
Checkmk Kubernetes Cluster and Node Collectors Checkmk cluster and node collecto
Django-Kubernetes - Learn how to deploy a docker-based Django application into a Kubernetes cluster into production on DigitalOcean
Django & Kubernetes Learn how to deploy a production-ready Django application in
Repository for tutorials, examples and starter scripts for using the MTU HPC cluster
MTU-HPC-Starter Repository for tutorials, examples and starter scripts for using the MTU HPC cluster Connecting to the MTU HPC cluster Within the coll
Kube OpenID Connect is an application that can be used to easily enable authentication flows via OIDC for a kubernetes cluster
Kube OpenID Connect is an application that can be used to easily enable authentication flows via OIDC for a kubernetes cluster. Kubernetes supports OpenID Connect Tokens as a way to identify users who access the cluster. Kube OpenID Connect helps users with it's plugin to authenticate an get kubectl config.
A new version of the CIDACS-RL linkage tool suitable to a cluster computing environment.
Fully Distributed CIDACS-RL The CIDACS-RL is a brazillian record linkage tool suitable to integrate large amount of data with high accuracy. However,
MGE-GraphQL is a Python library for building GraphQL mutations fast and easily
MGE-GraphQL Introduction MGE-GraphQL is a Python library for building GraphQL mutations fast and easily. Data Validations: A similar data validation w
(3DV 2021 Oral) Filtering by Cluster Consistency for Large-Scale Multi-Image Matching
Scalable Cluster-Consistency Statistics for Robust Multi-Object Matching (3DV 2021 Oral Presentation) Filtering by Cluster Consistency (FCC) is a very
Public scripts, services, and configuration for running a smart home K3S network cluster
makerhouse_network Public scripts, services, and configuration for running MakerHouse's home network. This network supports: TODO features here For mo
Play Wordle from any Kubernetes cluster.
wordle-operator 🟩 ⬛ 🟩 🟨 ⬛ Play Wordle from any Kubernetes cluster. Using the power of CustomResourceDefinitions and Kubernetes Operators, now you c
Generate FastAPI projects for high performance applications
Generate FastAPI projects for high performance applications. Based on MVC architectural pattern, WSGI + ASGI. Includes tests, pipeline, base utilities, Helm chart, and script for bootstrapping local Minikube with high available Redis cluster.
This is your launchpad that comes with a variety of applications waiting to run on your kubernetes cluster with a single click
This is your launchpad that comes with a variety of applications waiting to run on your kubernetes cluster with a single click.
MLops tools review for execution on multiple cluster types: slurm, kubernetes, dask...
MLops tools review focused on execution using multiple cluster types: slurm, kubernetes, dask...
Basic repository showing how to use Hydra + Hydra launchers on SLURM cluster
Slurm-Hydra-Submitit This repository is a minimal working example on how to: setup Hydra setup batch of slurm jobs on top of Hydra via submitit-launch
Cache-house - Caching tool for python, working with Redis single instance and Redis cluster mode
Caching tool for python, working with Redis single instance and Redis cluster mo
This repository provides some of the code implemented and the data used for the work proposed in "A Cluster-Based Trip Prediction Graph Neural Network Model for Bike Sharing Systems".
cluster-link-prediction This repository provides some of the code implemented and the data used for the work proposed in "A Cluster-Based Trip Predict
Bigdata - This Scrapy project uses Redis and Kafka to create a distributed on demand scraping cluster
Scrapy Cluster This Scrapy project uses Redis and Kafka to create a distributed
This Scrapy project uses Redis and Kafka to create a distributed on demand scraping cluster
This Scrapy project uses Redis and Kafka to create a distributed on demand scraping cluster.
Metrics-advisor - Analyze reshaped metrics from TiDB cluster Prometheus and give some advice about anomalies and correlation.
metrics-advisor Analyze reshaped metrics from TiDB cluster Prometheus and give some advice about anomalies and correlation. Team freedeaths mashenjun
Graph InfoClust: Leveraging cluster-level node information for unsupervised graph representation learning
Graph-InfoClust-GIC [PAKDD 2021] PAKDD'21 version Graph InfoClust: Maximizing Coarse-Grain Mutual Information in Graphs Preprint version Graph InfoClu
OpenQuake's Engine for Seismic Hazard and Risk Analysis
OpenQuake Engine The OpenQuake Engine is an open source application that allows users to compute seismic hazard and seismic risk of earthquakes on a g
Clearly see and debug your celery cluster in real time!
Clearly see and debug your celery cluster in real time! Do you use celery, and monitor your tasks with flower? You'll probably like Clearly! 👍 Clearl
Sub-Cluster AdaCos: Learning Representations for Anomalous Sound Detection.
Accompanying code for the paper Sub-Cluster AdaCos: Learning Representations for Anomalous Sound Detection.
Clustergram - Visualization and diagnostics for cluster analysis in Python
Clustergram Visualization and diagnostics for cluster analysis Clustergram is a diagram proposed by Matthias Schonlau in his paper The clustergram: A
Running a complete single-node all-in-one cluster instance of TIBCO ActiveMatrix™ BusinessWorks 6.8.0.
TIBCO ActiveMatrix™ BusinessWorks 6.8 Docker Image Image for running a complete single-node all-in-one cluster instance of TIBCO ActiveMatrix™ Busines
Confidence Propagation Cluster aims to replace NMS-based methods as a better box fusion framework in 2D/3D Object detection
CP-Cluster Confidence Propagation Cluster aims to replace NMS-based methods as a better box fusion framework in 2D/3D Object detection, Instance Segme
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CP-Cluster Confidence Propagation Cluster aims to replace NMS-based methods as a better box fusion framework in 2D/3D Object detection, Instance Segme
Online Pseudo Label Generation by Hierarchical Cluster Dynamics for Adaptive Person Re-identification
Online Pseudo Label Generation by Hierarchical Cluster Dynamics for Adaptive Person Re-identification
A hybrid SOTA solution of LiDAR panoptic segmentation with C++ implementations of point cloud clustering algorithms. ICCV21, Workshop on Traditional Computer Vision in the Age of Deep Learning
ICCVW21-TradiCV-Survey-of-LiDAR-Cluster Motivation In contrast to popular end-to-end deep learning LiDAR panoptic segmentation solutions, we propose a
Complete-IoU (CIoU) Loss and Cluster-NMS for Object Detection and Instance Segmentation (YOLACT)
Complete-IoU Loss and Cluster-NMS for Improving Object Detection and Instance Segmentation. Our paper is accepted by IEEE Transactions on Cybernetics
A high performance implementation of HDBSCAN clustering.
HDBSCAN HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates
The Fundamental Clustering Problems Suite (FCPS) summaries 54 state-of-the-art clustering algorithms, common cluster challenges and estimations of the number of clusters as well as the testing for cluster tendency.
FCPS Fundamental Clustering Problems Suite The package provides over sixty state-of-the-art clustering algorithms for unsupervised machine learning pu
Python package to visualize and cluster partial dependence.
partial_dependence A python library for plotting partial dependence patterns of machine learning classifiers. The technique is a black box approach to
CLI tool to computes CO2 emissions of HPC computations following green-algorithms.org methodology
gqueue gqueue is a CLI (command line interface) tool that computes carbon footprint of HPC computations on clusters running slurm. It follows the meth
A Lightweight Cluster/Cloud VM Job Management Tool 🚀
Lightweight Cluster/Cloud VM Job Management 🚀 Are you looking for a tool to manage your training runs locally, on Slurm/Open Grid Engine clusters, SS
The AKS cluster provisioner provisions AKS clusters :-)
Overview The AKS cluster provisioner provisions AKS clusters :-) It uses the Azure CLI to configure VNet and subnets before creating the cluster itsel
A transformer model to predict pathogenic mutations
MutFormer MutFormer is an application of the BERT (Bidirectional Encoder Representations from Transformers) NLP (Natural Language Processing) model wi
Identify and annotate mutations from genome editing assays.
CRISPR-detector Here we propose our CRISPR-detector to facilitate the CRISPR-edited amplicon and whole genome sequencing data analysis, with functions
Multiband spectro-radiometric satellite image analysis with K-means cluster algorithm
Multi-band Spectro Radiomertric Image Analysis with K-means Cluster Algorithm Overview Multi-band Spectro Radiomertric images are images comprising of
A LiDAR point cloud cluster for panoptic segmentation
Divide-and-Merge-LiDAR-Panoptic-Cluster A demo video of our method with semantic prior: More information will be coming soon! As a PhD student, I don'
A JSON utility library for Python featuring Django-style queries and mutations.
JSON Enhanced JSON Enhanced implements fast and pythonic queries and mutations for JSON objects. Installation You can install json-enhanced with pip:
Get mutations in cluster by querying from LAPIS API
Cluster Mutation Script Get mutations appearing within user-defined clusters. Usage Clusters are defined in the clusters dict in main.py: clusters = {
sysctl/sysfs settings on a fly for Kubernetes Cluster. No restarts are required for clusters and nodes.
SysBindings Daemon Little toolkit for control the sysctl/sysfs bindings on Kubernetes Cluster on the fly and without unnecessary restarts of cluster o
Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks
Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks This repository contains a TensorFlow implementation of "
TensorFlowOnSpark brings TensorFlow programs to Apache Spark clusters.
TensorFlowOnSpark TensorFlowOnSpark brings scalable deep learning to Apache Hadoop and Apache Spark clusters. By combining salient features from the T
A zero-dependency Python library for getting the Kubernetes token of a AWS EKS cluster
tokeks A zero-dependency Python library for getting the Kubernetes token of a AWS EKS cluster. No AWS CLI, third-party client or library (boto3, botoc
SinglepassTextCluster, an TextCluster tools based on Singlepass cluster algorithm that use tfidf vector and doc2vec,which can be used for individual real-time corpus cluster task。基于single-pass算法思想的自动文本聚类小组件,内置tfidf和doc2vec两种文本向量方法,可自动输出聚类数目、类簇文档集合和簇类大小,用于自有实时数据的聚类任务。
项目的背景 SinglepassTextCluster, an TextCluster tool based on Singlepass cluster algorithm that use tfidf vector and doc2vec,which can be used for individ
CLabel is a terminal-based cluster labeling tool that allows you to explore text data interactively and label clusters based on reviewing that data.
CLabel is a terminal-based cluster labeling tool that allows you to explore text data interactively and label clusters based on reviewing that
A simple machine learning package to cluster keywords in higher-level groups.
Simple Keyword Clusterer A simple machine learning package to cluster keywords in higher-level groups. Example: "Senior Frontend Engineer" -- "Fronte
Tools to connect to and interact with the Mila cluster
milatools The milatools package provides the mila command, which is meant to help with connecting to and interacting with the Mila cluster. Install Re
GraphQL security auditing script with a focus on performing batch GraphQL queries and mutations
BatchQL BatchQL is a GraphQL security auditing script with a focus on performing batch GraphQL queries and mutations. This script is not complex, and
Extract Thailand COVID-19 Cluster data from daily briefing pdf.
Thailand COVID-19 Cluster Data Extraction About Extract Clusters from Thailand Daily COVID-19 briefing PDF Download latest data Here. Data will be upd
A low power 1U Raspberry Pi cluster server for inexpensive colocation.
Raspberry Pi 1U Server There are server colocation providers that allow hosting a 1U server for as low as $30/month, but there's a catch: There are re
A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019).
ClusterGCN ⠀⠀ A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019). A
codes for paper Combining Dynamic Local Context Focus and Dependency Cluster Attention for Aspect-level sentiment classification
DLCF-DCA codes for paper Combining Dynamic Local Context Focus and Dependency Cluster Attention for Aspect-level sentiment classification. submitted t
A template repository for submitting a job to the Slurm Cluster installed at the DISI - University of Bologna
Cluster di HPC con GPU per esperimenti di calcolo (draft version 1.0) Per poter utilizzare il cluster il primo passo è abilitare l'account istituziona
ClusterMonitor - a very simple python script which monitors and records the CPU and RAM consumption of submitted cluster jobs
ClusterMonitor A very simple python script which monitors and records the CPU and RAM consumption of submitted cluster jobs. Usage To start recording
🎛 Distributed machine learning made simple.
🎛 lazycluster Distributed machine learning made simple. Use your preferred distributed ML framework like a lazy engineer. Getting Started • Highlight
TensorFlowOnSpark brings TensorFlow programs to Apache Spark clusters.
TensorFlowOnSpark TensorFlowOnSpark brings scalable deep learning to Apache Hadoop and Apache Spark clusters. By combining salient features from the T
To be a next-generation DL-based phenotype prediction from genome mutations.
Sequence -----------+-- 3D_structure -- 3D_module --+ +-- ? | |
Ganeti is a virtual machine cluster management tool built on top of existing virtualization technologies such as Xen or KVM and other open source software.
Ganeti 3.0 =========== For installation instructions, read the INSTALL and the doc/install.rst files. For a brief introduction, read the ganeti(7) m
DC/OS - The Datacenter Operating System
DC/OS - The Datacenter Operating System The easiest way to run microservices, big data, and containers in production. What is DC/OS? Like traditional
Python cluster client for the official redis cluster. Redis 3.0+.
redis-py-cluster This client provides a client for redis cluster that was added in redis 3.0. This project is a port of redis-rb-cluster by antirez, w
Serverless proxy for Spark cluster
Hydrosphere Mist Hydrosphere Mist is a serverless proxy for Spark cluster. Mist provides a new functional programming framework and deployment model f