Python Graph-drawing Resources

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

erdantic is a simple tool for drawing entity relationship diagrams (ERDs) for Python data model classes. Diagrams are rendered using the venerable Graphviz library.

SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks Molecular interaction networks are powerful resources for the discovery. While dee

Graph-Based Protein Design This repo contains code for Generative Models for Graph-Based Protein Design by John Ingraham, Vikas Garg, Regina Barzilay

Desmos Bezier Renderer A simple image/video to Desmos graph converter run locally Sample Result Setup Install dependencies apt update apt install git

FedGraphNN: A Federated Learning System and Benchmark for Graph Neural Networks A Research-oriented Federated Learning Library and Benchmark Platform

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs Jiong Zhu, Yujun Yan, Lingxiao Zhao, Mark Heimann, Leman Akoglu,

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

Introduction This is the PyTorch implementation for Adaptive Graph Representation Learning for Video Person Re-identification. Get started git clone h

Learning Knowledge Bases with Parameters for Task-Oriented Dialogue Systems This is the implementation of the paper: Learning Knowledge Bases with Par

End-to-End Optimization of Scene Layout Code release for: End-to-End Optimization of Scene Layout CVPR 2020 (Oral) Project site, Bibtex For help conta

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

This repository contains code to train and test GNN models for recommendation, mainly using the Deep Graph Library (DGL).

SpikeX is a collection of pipes ready to be plugged in a spaCy pipeline. It aims to help in building knowledge extraction tools with almost-zero effort.

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

Few-shot Graph Learning for Molecular Property Prediction Introduction This is the source code and dataset for the following paper: Few-shot Graph Lea

Knowledge Graph,Question Answering System，基于知识图谱和向量检索的医疗诊断问答系统

GraphMask This repository contains an implementation of GraphMask, the interpretability technique for graph neural networks presented in our ICLR 2021

libmaths libmaths was created not only as a learning experience for me, but as a way to make mathematical models in seconds for Python users using mat

Neighbor Averaging over Relation Subgraphs (NARS) NARS is an algorithm for node classification on heterogeneous graphs, based on scalable neighbor ave

My Body is a Cage: the Role of Morphology in Graph-Based Incompatible Control

QA-GNN: Question Answering using Language Models and Knowledge Graphs This repo provides the source code & data of our paper: QA-GNN: Reasoning with L

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

Comprehensive and Rigorous Framework for Reproducible Recommender Systems Evaluation

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

OSMnet Tools for the extraction of OpenStreetMap (OSM) street network data. Intended to be used in tandem with Pandana and UrbanAccess libraries to ex

PyTorch code for the paper "Curriculum Graph Co-Teaching for Multi-target Domain Adaptation" (CVPR2021) This repo presents PyTorch implementation of M

STAR-FC This code is the implementation for the CVPR 2021 paper "Structure-Aware Face Clustering on a Large-Scale Graph with 10^7 Nodes" 🌟 🌟 . 🎓 Re

FAU Implementation of the paper: Facial Action Unit Intensity Estimation via Semantic Correspondence Learning with Dynamic Graph Convolution. Yingruo

NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

Rethinking Graph Neural Architecture Search from Message-passing Intro The GNAS can automatically learn better architecture with the optimal depth of

DrawBot You don't speak french? No worries, english translation is over here. C'est quoi ? DrawBot est un logiciel codé par V2F qui va prendre possess

SiamGAT 1. Environment setup This code has been tested on Ubuntu 16.04, Python 3.5, Pytorch 1.2.0, CUDA 9.0. Please install related libraries before r

A Critical Assessment of State-of-the-Art in Entity Alignment This repository contains the source code for the paper A Critical Assessment of State-of

Spectral Temporal Graph Neural Network for Multivariate Time-series Forecasting This repository is the official implementation of Spectral Temporal Gr

skggm : Gaussian graphical models using the scikit-learn API In the last decade, learning networks that encode conditional independence relationships

cuGraph - GPU Graph Analytics The RAPIDS cuGraph library is a collection of GPU accelerated graph algorithms that process data found in GPU DataFrames

CoMatch: Semi-supervised Learning with Contrastive Graph Regularization (Salesforce Research) This is a PyTorch implementation of the CoMatch paper [B

QC-DGM This is the official PyTorch implementation and models for our CVPR 2021 paper: Deep Graph Matching under Quadratic Constraint. It also contain

Deep GNN, Shallow Sampling Hanqing Zeng, Muhan Zhang, Yinglong Xia, Ajitesh Srivastava, Andrey Malevich, Rajgopal Kannan, Viktor Prasanna, Long Jin, R

Open Semantic Search https://opensemanticsearch.org Integrated search server, ETL framework for document processing (crawling, text extraction, text a

FiGNN for CTR prediction The code and data for our paper in CIKM2019: Fi-GNN: Modeling Feature Interactions via Graph Neural Networks for CTR Predicti

DeepSphere-Weather - Deep Learning on the sphere for weather/climate applications. The code in this repository provides a scalable and flexible framew

Implicit Graph Neural Networks This repository is the official PyTorch implementation of "Implicit Graph Neural Networks". Fangda Gu*, Heng Chang*, We

Learning Intents behind Interactions with Knowledge Graph for Recommendation This is our PyTorch implementation for the paper: Xiang Wang, Tinglin Hua

tf-fsvd TensorFlow Implementation of Functional Singular Value Decomposition for paper Fast Graph Learning with Unique Optimal Solutions Cite If you f

SuperGAT Official implementation of Self-supervised Graph Attention Networks (SuperGAT). This model is presented at How to Find Your Friendly Neighbor

skggm : Gaussian graphical models using the scikit-learn API In the last decade, learning networks that encode conditional independence relationships

Welcome to Spektral Spektral is a Python library for graph deep learning, based on the Keras API and TensorFlow 2. The main goal of this project is to

Documentation | Paper | Colab Notebooks | External Resources | OGB Examples PyTorch Geometric (PyG) is a geometric deep learning extension library for

Little Ball of Fur is a graph sampling extension library for Python. Please look at the Documentation, relevant Paper, Promo video and External Resour

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

EGNN - Pytorch Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch. May be eventually used for Alphafold2 replication. This

Ultra-Data-Efficient GAN Training: Drawing A Lottery Ticket First, Then Training It Toughly Code for this paper Ultra-Data-Efficient GAN Tra

E(n)-Equivariant Transformer (wip) Implementation of E(n)-Equivariant Transformer, which extends the ideas from Welling's E(n)-Equivariant G

DrawBot DrawBot is a powerful, free application for macOS that invites you to write Python scripts to generate two-dimensional graphics. The built-in

libmaths was created not only as a learning experience for me, but as a way to make mathematical models in seconds for Python users using mat

Predicting Patient Outcomes with Graph Representation Learning This repository contains the code used for Predicting Patient Outcomes with Graph Repre

MyPaint A fast and dead-simple painting app for artists Features Infinite canvas Extremely configurable brushes Distraction-free fullscreen mode Exten

Notion Graph View Export Notion pages to a Roam Research like graph view.

A PyTorch implementation of "Pathfinder Discovery Networks for Neural Message Passing" (WebConf 2021). Abstract In this work we propose Pathfind

This is the official PyTorch implementation of our paper: "Joint Object Detection and Multi-Object Tracking with Graph Neural Networks". Our project website and video demos are here.

A command line stock market / portfolio tracker originally insipred by Ericm's Stonks program, featuring unicode for incredibly high detailed graphs even in a terminal.

Plots is a graph plotting app for GNOME. Plots makes it easy to visualise mathematical formulae. In addition to basic arithmetic operations, it supports trigonometric, hyperbolic, exponential and logarithmic functions, as well as arbitrary sums and products.Plots is designed to integrate well with the GNOME desktop and takes advantage of modern hardware using OpenGL, and currently supports OpenGL 3.3+.

PyTextRank PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, used to: extract the top-ranked phrases from text document

plotly.py Latest Release User forum PyPI Downloads License Data Science Workspaces Our recommended IDE for Plotly’s Python graphing library is Dash En

This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data.

PyTextRank PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, used to: extract the top-ranked phrases from text document

plotly.py Latest Release User forum PyPI Downloads License Data Science Workspaces Our recommended IDE for Plotly’s Python graphing library is Dash En

Overview | Tutorials | Examples | Installation | FAQ | How to Cite Welcome to ktrain News and Announcements 2020-11-08: ktrain v0.25.x is released and

vprof vprof is a Python package providing rich and interactive visualizations for various Python program characteristics such as running time and memo

THE PROJECT IS ARCHIVED Forks: https://github.com/orsinium/forks DepHell -- project management for Python. Why it is better than all other tools: Form

This project is no longer maintained March 2020 Update: Please go see the amazing Pysa tutorial that should get you up to speed finding security vulne

Neo4j Bolt Driver for Python This repository contains the official Neo4j driver for Python. Each driver release (from 4.0 upwards) is built specifical

jsonpickle jsonpickle is a library for the two-way conversion of complex Python objects and JSON. jsonpickle builds upon the existing JSON encoders, s

OpenGraph is a module of python for parsing the Open Graph Protocol, you can read more about the specification at http://ogp.me/ Installation $ pip in

Django Facebook by Thierry Schellenbach (mellowmorning.com) Status Django and Facebook are both rapidly changing at the moment. Meanwhile, I'm caught

This is a simple graph database in SQLite, inspired by "SQLite as a document database".

Graph Transformer Architecture Source code for the paper "A Generalization of Transformer Networks to Graphs" by Vijay Prakash Dwivedi and Xavier Bres

🚀 Gated Graph Transformers Gated Graph Transformers for graph-level property prediction, i.e. graph classification and regression. Associated article

Adjacent Attention Network An implementation of a simple transformer that is equivalent to graph neural network where the message passing is done with

Context Matters: Graph-based Self-supervised Representation Learning for Medical Images Official PyTorch implementation for paper Context Matters: Gra

rm2canvas A html canvas based screencasting server for the reMarkable 1/2 digital paper systems. It draws live on the canvas from the remarkables touc

Facebook Python SDK This client library is designed to support the Facebook Graph API and the official Facebook JavaScript SDK, which is the canonical

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

StellarGraph Machine Learning Library StellarGraph is a Python library for machine learning on graphs and networks. Table of Contents Introduction Get

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

Little Ball of Fur is a graph sampling extension library for Python. Please look at the Documentation, relevant Paper, Promo video and External Resour

Documentation | External Resources | Datasets PyTorch Geometric Temporal is a temporal (dynamic) extension library for PyTorch Geometric. The library

vprof vprof is a Python package providing rich and interactive visualizations for various Python program characteristics such as running time and memo

Pythonic Data Structures and Algorithms Minimal and clean example implementations of data structures and algorithms in Python 3. Contributing Thanks f