Python Hierarchical-clustering Resources

Faiss Faiss is a library for efficient similarity search and clustering of dense vectors. It contains algorithms that search in sets of vectors of any

Infomap Infomap is a network clustering algorithm based on the Map equation. For detailed documentation, see mapequation.org/infomap. For a list of re

Microscopium Unsupervised clustering and dataset exploration for high content screens. See microscopium in action Public dataset BBBC021 from the Broa

Unsupervised-Machine-Learning Flat Clustering K-Means clusternig example with Python and Scikit-learn Flat clustering Clustering algorithms group a se

sm_content_clustering A Python module for clustering creators of social media content into networks. Currently supports identifying potential networks

hierarchical-multi-label-text-classification-pytorch Hierarchical Multi-label Text Classification: An Attention-based Recurrent Network Approach This

Self Organising Map for Clustering of Atomistic Samples - V2 Description Self Organising Map (also known as Kohonen Network) implemented in Python for

HDBSCAN HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates

pyclustering is a Python, C++ data mining library (clustering algorithm, oscillatory networks, neural networks). The library provides Python and C++ implementations (C++ pyclustering library) of each algorithm or model. C++ pyclustering library is a part of pyclustering and supported for Linux, Windows and MacOS operating systems.

FCPS Fundamental Clustering Problems Suite The package provides over sixty state-of-the-art clustering algorithms for unsupervised machine learning pu

Buckshot++: An Outlier-Resistant and Scalable Clustering Algorithm. (Inspired by the Buckshot Algorithm.) Here, we introduce a new algorithm, which we

tree-SNE t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in s

MiniSom Self Organizing Maps MiniSom is a minimalistic and Numpy based implementation of the Self Organizing Maps (SOM). SOM is a type of Artificial N

Description Implements (high-dimenstional) clustering algorithm described in https://arxiv.org/pdf/1804.02624.pdf Dependencies python3 pytorch (=0.4)

Hyperbolic Hierarchical Clustering (HypHC) This code is the official PyTorch implementation of the NeurIPS 2020 paper: From Trees to Continuous Embedd

htsprophet Hierarchical Time Series Forecasting using Prophet Credit to Rob J. Hyndman and research partners as much of the code was developed with th

Spectral-spatial contrastive clustering (SSCC) Yaoming Cai, Yan Liu, Zijia Zhang, Zhihua Cai, and Xiaobo Liu, Large-scale Hyperspectral Image Clusteri

Music Trees Supplementary code for the experiments described in the 2021 ISMIR submission: Leveraging Hierarchical Structures for Few Shot Musical Ins

PyAF (Python Automatic Forecasting) PyAF is an Open Source Python library for Automatic Forecasting built on top of popular data science python module

hierarchical-transformer-1d Implementation of H-Transformer-1D, Hierarchical Attention for Sequence Learning using 🤗 transformers In Progress!! 2021.

HRegNet: A Hierarchical Network for Large-scale Outdoor LiDAR Point Cloud Registration Introduction The repository contains the source code and pre-tr

HAIS Hierarchical Aggregation for 3D Instance Segmentation (ICCV 2021) by Shaoyu Chen, Jiemin Fang, Qian Zhang, Wenyu Liu, Xinggang Wang*. (*) Corresp

HIGL This is a PyTorch implementation for our paper: Landmark-Guided Subgoal Generation in Hierarchical Reinforcement Learning (NeurIPS 2021). Our cod

cLoops2: full stack analysis tool for chromatin interactions Introduction cLoops2 is an extension of our previous work, cLoops. From loop-calling base

PWCLO-Net: Deep LiDAR Odometry in 3D Point Clouds Using Hierarchical Embedding Mask Optimization (CVPR 2021) This is the official implementation of PW

Data and Code for paper Outlining and Filling: Hierarchical Query Graph Generation for Answering Complex Questions over Knowledge Graph is available f

Dugh-NeurIPS-2021 This repo contains the code for the paper "Efficient hierarchical Bayesian inference for spatio-temporal regression models in neuroi

Lidar-Segementation An implementation on "Curved-Voxel Clustering for Accurate Segmentation of 3D LiDAR Point Clouds with Real-Time Performance" from

deeptime Releases: Installation via conda recommended. conda install -c conda-forge deeptime pip install deeptime Documentation: deeptime-ml.github.io

Graph Regularized Residual Subspace Clustering Network for hyperspectral image clustering

Hierarchical User Intent Graph Network for Multimedia Recommendation This is our Pytorch implementation for the paper: Hierarchical User Intent Graph

K Means Algorithm What is K Means This algorithm is an iterative algorithm that partitions the dataset according to their features into K number of pr

We proposed a new approach to detect anomalies of mobile robot data. We investigate each data seperately with two clustering method hierarchical and k-means. There are two sub-method that we used for produce an anomaly score. Then, we merge these two score and produce merged anomaly score as a result.

HIGL This is a PyTorch implementation for our paper: Landmark-Guided Subgoal Generation in Hierarchical Reinforcement Learning (NeurIPS 2021). Our cod

Hierarchical Kinematic Probability Distributions for 3D Human Shape and Pose Estimation from Images in the Wild Akash Sengupta, Ignas Budvytis, Robert

A python package adding basic hierarchal networks in pytorch for classification tasks. It implements a simple hierarchal network structure based on feed-backward outputs.

Auto-Research A no-code utility to generate a detailed well-cited survey with topic clustered sections (draft paper format) and other interesting arti

Hierarchical Few-Shot Generative Models Giorgio Giannone, Ole Winther This repo contains code and experiments for the paper Hierarchical Few-Shot Gene

Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder structure with deep supervision (—𝘜𝘕𝘦𝘵++). Built in TensorFlow 2.5. Configured for voxel-level clinically significant prostate cancer detection in multi-channel 3D bpMRI scans.

MCGC Description This is the code of "Multi-view Contrastive Graph Clustering" in NeurlPS 2021. Datasets Results ACM DBLP IMDB Amazon photos Amazon co

Hierarchical Skills for Efficient Exploration This is the source code release for the paper Hierarchical Skills for Efficient Exploration. It contains

FEniCSx Error Estimation (FEniCSx-EE) Description FEniCSx-EE is an open source library showing how various error estimation strategies can be implemen

[CVPR 2021] Generative Hierarchical Features from Synthesizing Images

ML from Scratch MACHINE LEARNING TOPICS COVERED - FROM SCRATCH Linear Regression Logistic Regression K Means Clustering K Nearest Neighbours Decision

Graph Mining Author: Jiayi Chen Time: April 2021 Implemented Algorithms: Network: Scrabing Data, Network Construbtion and Network Measurement (e.g., P

Vector AI is a framework designed to make the process of building production grade vector based applications as quickly and easily as possible. Create

HRKD: Hierarchical Relational Knowledge Distillation for Cross-domain Language Model Compression This repository contains the code for the paper in EM

A Library for Modelling Probabilistic Hierarchical Graphical Models in PyTorch

A Brain Tumor Detection and Classification Model built using RESNET50 architecture. The model is also deployed as a web application using Flask framework.

hierarchical_fashion_graph_network This is our Tensorflow implementation for the paper: Xingchen Li, Xiang Wang, Xiangnan He, Long Chen, Jun Xiao, and

SR-HGNN ICDM-2020 《Global Context Enhanced Social Recommendation with Hierarchical Graph Neural Networks》 Environments python 3.8 pytorch-1.6 DGL 0.5.

ALL Snow Removed: Single Image Desnowing Algorithm Using Hierarchical Dual-tree Complex Wavelet Representation and Contradict Channel Loss (HDCWNet) (

Data Science A collection of neat and practical data science and machine learning projects Explore the docs » Report Bug · Request Feature Table of Co

The CPC-big model and k-means checkpoints used in Analyzing Speaker Information in Self-Supervised Models to Improve Zero-Resource Speech Processing.

An adaptive hierarchical energy management strategy This project contains the source code of an adaptive hierarchical EMS combining heuristic equivale

Hierarchical GAN for large dimensional financial market data Implementation This repository is an implementation of the [Hierarchical (Sig-Wasserstein

d3-flame-graph A D3.js plugin that produces flame graphs from hierarchical data. If you don't know what flame graphs are, check Brendan Gregg's post.

SSSNET SSSNET: Semi-Supervised Signed Network Clustering For details, please read our paper. Environment Setup Overview The project has been tested on

CPC_DeepCluster This is the implementation of "SELF SUPERVISED REPRESENTATION LEARNING WITH DEEP CLUSTERING FOR ACOUSTIC UNIT DISCOVERY FROM RAW SPEEC

Swin Transformer for Semantic Segmentation of satellite images This repo contains the supported code and configuration files to reproduce semantic seg

A framework for building (and incrementally growing) graph-based data structures used in hierarchical or DAG-structured clustering and nearest neighbor search

Tribuo - A Java prediction library (v4.1) Tribuo is a machine learning library in Java that provides multi-class classification, regression, clusterin

Unseen Object Amodal Instance Segmentation (UOAIS) Seunghyeok Back, Joosoon Lee, Taewon Kim, Sangjun Noh, Raeyoung Kang, Seongho Bak, Kyoobin Lee This

Hierarchical neural-net interpretations (ACD) 🧠 Produces hierarchical interpretations for a single prediction made by a pytorch neural network. Offic

Correlation Explanation Methods Official implementation of linear correlation explanation (linear CorEx) and temporal correlation explanation (T-CorEx

Hierarchical Memory Matching Network for Video Object Segmentation Hongje Seong, Seoung Wug Oh, Joon-Young Lee, Seongwon Lee, Suhyeon Lee, Euntai Kim

Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo

Hierarchical Memory Matching Network for Video Object Segmentation Hongje Seong, Seoung Wug Oh, Joon-Young Lee, Seongwon Lee, Suhyeon Lee, Euntai Kim

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

Poincaré Embeddings for Learning Hierarchical Representations PyTorch implementation of Poincaré Embeddings for Learning Hierarchical Representations

Anchored CorEx: Hierarchical Topic Modeling with Minimal Domain Knowledge Correlation Explanation (CorEx) is a topic model that yields rich topics tha

Multilingual Latent Dirichlet Allocation (LDA) Pipeline This project is for text clustering using the Latent Dirichlet Allocation (LDA) algorithm. It

LMFD-PAD Note This is the official repository of the paper: LMFD-PAD: Learnable Multi-level Frequency Decomposition and Hierarchical Attention Mechani

Hierarchical Transformer Memory (HTM) - Pytorch Implementation of Hierarchical Transformer Memory (HTM) for Pytorch. This Deepmind paper proposes a si

EEND-vector clustering The EEND-vector clustering (End-to-End-Neural-Diarization-vector clustering) is a speaker diarization framework that integrates

Convolutional MLP ConvMLP: Hierarchical Convolutional MLPs for Vision Preprint link: ConvMLP: Hierarchical Convolutional MLPs for Vision By Jiachen Li

Case studies with Bayesian methods

Simple-Kmeans-Clustering-Algorithm Abstract K-means is a centroid-based algorithm, or a distance-based algorithm, where we calculate the distances to

MultiModal-InfoMax This repository contains the official implementation code of the paper Improving Multimodal Fusion with Hierarchical Mutual Informa

Simple Keyword Clusterer A simple machine learning package to cluster keywords in higher-level groups. Example: "Senior Frontend Engineer" -- "Fronte

Hierarchical Conditional Flow: A Unified Framework for Image Super-Resolution and Image Rescaling (HCFlow, ICCV2021) This repository is the official P

Hierarchical Conditional Flow: A Unified Framework for Image Super-Resolution and Image Rescaling (HCFlow, ICCV2021) This repository is the official P

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Framework overview This library allows to quickly implement different architectures based on Reservoir Computing (the family of approaches popularized

R2D2 This is the official code for paper titled "R2D2: Recursive Transformer based on Differentiable Tree for Interpretable Hierarchical Language Mode

[CVPR2021] Domain Consensus Clustering for Universal Domain Adaptation [Paper] Prerequisites To install requirements: pip install -r requirements.txt

DenseClus is a Python module for clustering mixed type data using UMAP and HDBSCAN. Allowing for both categorical and numerical data, DenseClus makes it possible to incorporate all features in clustering.

Hierarchical Metadata-Aware Document Categorization under Weak Supervision This project provides a weakly supervised framework for hierarchical metada

JigsawClustering Jigsaw Clustering for Unsupervised Visual Representation Learning Pengguang Chen, Shu Liu, Jiaya Jia Introduction This project provid

HiFT: Hierarchical Feature Transformer for Aerial Tracking Ziang Cao, Changhong Fu, Junjie Ye, Bowen Li, and Yiming Li Our paper is Accepted by ICCV 2

Poincaré Embeddings for Learning Hierarchical Representations PyTorch implementation of Poincaré Embeddings for Learning Hierarchical Representations

Deep Continuous Clustering Introduction This is a Pytorch implementation of the DCC algorithms presented in the following paper (paper): Sohil Atul Sh

H-Transformer-1D Implementation of H-Transformer-1D, Transformer using hierarchical Attention for sequence learning with subquadratic costs. For now,

A PyTorch Reproduction of HCN Co-occurrence Feature Learning from Skeleton Data for Action Recognition and Detection with Hierarchical Aggregation. Ch

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

SEAL ⠀⠀⠀ A PyTorch implementation of Semi-Supervised Graph Classification: A Hierarchical Graph Perspective (WWW 2019) Abstract Node classification an

ClusterGCN ⠀⠀ A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019). A

Hierarchical Cross-Modal Agent for Robotics Vision-and-Language Navigation This repository is the pytorch implementation of our paper: Hierarchical Cr

Swin-Transformer-Tensorflow A direct translation of the official PyTorch implementation of "Swin Transformer: Hierarchical Vision Transformer using Sh

Hierarchical Motion Understanding via Motion Programs (CVPR 2021) This repository contains the official implementation of: Hierarchical Motion Underst