Python Medical-datasets Resources

[arXiv] The main motivation of the SHIFT15M project is to provide a dataset that contains natural dataset shifts collected from a web service IQON, wh

Exposure: A White-Box Photo Post-Processing Framework ACM Transactions on Graphics (presented at SIGGRAPH 2018) Yuanming Hu1,2, Hao He1,2, Chenxi Xu1,

NoCodeSeg: Deep segmentation made easy! This is the official repository for the manuscript "Code-free development and deployment of deep segmentation

Interactive Web App with Streamlit and Scikit-learn that applies different Classification algorithms to popular datasets Datasets Used: Iris dataset,

Spiking neural network (SNN), compared with depth neural network (DNN), has faster processing speed, lower energy consumption and more biological interpretability, which is expected to approach Strong AI.

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement

Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor

Semantic Segmentation in PyTorch Semantic Segmentation in PyTorch Requirements Main Features Models Datasets Losses Learning rate schedulers Data augm

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

Python dataset creator to construct datasets composed of OpenFace extracted features and Shimmer3 GSR+ Sensor datas

SkeletonNet This repository constains the codes and ShapeNetV1-Surface-Skeleton,ShapNetV1-SkeletalVolume and 2d image datasets ShapeNetRendering. Plea

ACAV100M: Automatic Curation of Large-Scale Datasets for Audio-Visual Video Representation Learning This repository contains the code for our ICCV 202

ObjTables: Tools for creating and reusing high-quality spreadsheets ObjTables is a toolkit which makes it easy to use spreadsheets (e.g., XLSX workboo

Replication Package for "An Empirical Study of the Effectiveness of an Ensemble of Stand-alone Sentiment Detection Tools for Software Engineering Data

Variance-Aware-MT-Test-Sets Variance-Aware Machine Translation Test Sets License See LICENSE. We follow the data licensing plan as the same as the WMT

Understanding the Effects of Datasets Characteristics on Offline Reinforcement Learning Kajetan Schweighofer1, Markus Hofmarcher1, Marius-Constantin D

JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ

CS4044D Machine Learning Assignment 1 By Dev Sony, B180297CS The question, report and source code can be found here. Github Repo Solution 1 Based on t

This is a paired face to comics dataset, which can be used to train pix2pix or similar networks.

Fast Symbolic Regression Symbolic Regression is a non-linear, non-parametric Machine Learning method capable of modeling complex data sets. fastsr aim

Introduction Datasets and source code for our paper Webly Supervised Fine-Grained Recognition: Benchmark Datasets and An Approach Datasets: WebFG-496

Recurrent Mask Refinement for Few-Shot Medical Image Segmentation Steps Install any missing packages using pip or conda Preprocess each dataset using

Semisupervised Multitask Learning This repository is an unofficial and slightly modified implementation of UM-Adapt[1] using PyTorch. This code primar

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format.

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. This repository provides the codebase and dataset for our work WORD: Revisiting Or

RLDS RLDS stands for Reinforcement Learning Datasets and it is an ecosystem of tools to store, retrieve and manipulate episodic data in the context of

[NeurIPS 2021] Well-tuned Simple Nets Excel on Tabular Datasets Introduction This repo contains the source code accompanying the paper: Well-tuned Sim

uber-pickups-analysis Data Source: https://www.kaggle.com/fivethirtyeight/uber-pickups-in-new-york-city Information about data set The dataset contain

ActiveLearningDemo How to run step one put the dataset folder and use command below to split the dataset to the required structure run utils.py For ea

stsb_multi_mt_en STS Benchmark comprises a selection of the English datasets used in the STS tasks organized in the context of SemEval between 2012 an

DistMIS Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation. DistriMIS Distributing Deep Learning Hyperparameter Tuning

MedAI: Transparency in Medical Image Segmentation What is this repo This repo contains the code and experiments that are implemented to contribute in

bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im

SparkDataset Provides instant access to many datasets right from Pyspark (in Spark DataFrame structure). Drop a star if you like the project. 😃 Motiv

uber-pickups-analysis Data Source: https://www.kaggle.com/fivethirtyeight/uber-pickups-in-new-york-city Information about data set The dataset contain

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

Synthetic-Data-Replica-for-Healthcare Description What is this? A tailored hands-on tutorial showing how to use Python to create synthetic data replic

Video Class Agnostic Segmentation [Method Paper] [Benchmark Paper] [Project] [Demo] Official Datasets and Implementation from our Paper "Video Class A

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

HW 2: Visualizing interesting datasets Check out the project instructions here! Mean Earnings per Hour for Males and Females My first graph uses data

Asterisk is a framework to generate high-quality training datasets at scale

A dataset handling library for computer vision datasets in LOST-fromat

Med Phys Scripts These are scripts that I, the medical physics assistant at Cookeville Regional Medical Center, wrote for use in our radiation therapy

HM02: Visualizing Interesting Datasets This is a homework assignment for CSCI 40 class at Claremont McKenna College. Go to the project page to learn m

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

🎵 A repository for manually annotating files to create labeled acoustic datasets for machine learning.

Official codes for "Efficient Training of Visual Transformers with Small Datasets", NerIPS 2021.

Physion: Evaluating Physical Prediction from Vision in Humans and Machines This repo contains code and data to reproduce the results in our paper, Phy

github_project This is a project for medical image segmentation. This project includes common medical image segmentation models such as U-net, FCN, De

rawbuilder an elegant datasets factory Free software: MIT license Documentation: https://rawbuilder.readthedocs.io. Features Schema oriented datasets

Blockchain-based Medical Records 📄 Abstract Blockchain has the ability to keep an incorruptible, decentralized, and transparent log of all patient da

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

napkinXC napkinXC is an extremely simple and fast library for extreme multi-class and multi-label classification, that focus of implementing various m

KnowPrompt Code and datasets for our paper "KnowPrompt: Knowledge-aware Prompt-tuning with Synergistic Optimization for Relation Extraction" Requireme

Distribution-Balanced Loss [Paper] The implementation of our paper Distribution-Balanced Loss for Multi-Label Classification in Long-Tailed Datasets (

QuakeLabeler Quake Labeler was born from the need for seismologists and developers who are not AI specialists to easily, quickly, and independently bu

The Breathing K-Means Algorithm (with examples) The Breathing K-Means is an approximation algorithm for the k-means problem that (on average) is bette

CoraNet This is the 3D Implementation of 《Inconsistency-aware Uncertainty Estimation for Semi-supervised Medical Image Segmentation》 Environment pytor

The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classifier')

Copy Paste positive polyp using poisson image blending for medical image segmentation According poisson image blending I've completely used it for bio

Glue Glue is a python project to link visualizations of scientific datasets across many files. Click on the image for a quick demo: Features Interacti

Tensor2Tensor Tensor2Tensor, or T2T for short, is a library of deep learning models and datasets designed to make deep learning more accessible and ac

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

Masader The first online catalogue for Arabic NLP datasets. This catalogue contains 200 datasets with more than 25 metadata annotations for each datas

ANTsPyNet A collection of deep learning architectures and applications ported to the python language and tools for basic medical image processing. Bas

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

A collection of papers about Transformer in the field of medical image analysis.

Overview The Open Graph Benchmark (OGB) is a collection of benchmark datasets, data loaders, and evaluators for graph machine learning. Datasets cover

ConditionalQA Datasets accompanying the paper ConditionalQA: A Complex Reading Comprehension Dataset with Conditional Answers. Disclaimer This dataset

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

Breaking the Dilemma of Medical Image-to-image Translation Supervised Pix2Pix and unsupervised Cycle-consistency are two modes that dominate the field

The Python Package for DataHerb A DataHerb Core Service to Create and Load Datasets.

HyperSpy is an open source Python library for the interactive analysis of multidimensional datasets that can be described as multidimensional arrays o

MIMIC-III Benchmarks Python suite to construct benchmark machine learning datasets from the MIMIC-III clinical database. Currently, the benchmark data

Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)

Examples for Hub - Dataset Format for AI A repository showcasing examples of using Hub Uploading Dataset Places365 Colab Tutorials Notebook Link Getti

torchxrayvision A library for chest X-ray datasets and models. Including pre-trained models. ( 🎬 promo video about the project) Motivation: While the

A 3D multi-modal medical image segmentation library in PyTorch We strongly believe in open and reproducible deep learning research. Our goal is to imp

SurRoL IROS 2021 SurRoL: An Open-source Reinforcement Learning Centered and dVRK Compatible Platform for Surgical Robot Learning Features dVRK compati

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

multitask-learning-transformers A simple recipe for training and inferencing Transformer architecture for Multi-Task Learning on custom datasets. You

C++ Implementation of PyTorch Tutorials for Everyone OS (Compiler)\LibTorch 1.9.0 macOS (clang 10.0, 11.0, 12.0) Linux (gcc 8, 9, 10, 11) Windows (msv

Semi-supervised-learning-for-medical-image-segmentation. Recently, semi-supervised image segmentation has become a hot topic in medical image computin

Reddit-Image-Scraper Reddit Reddit is an American Social news aggregation, web content rating, and discussion website. Reddit has been devided by topi

Retina Blood Vessels Segmentation This is an implementation of the research paper "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional

A PyTorch implementation of V-Net Vnet is a PyTorch implementation of the paper V-Net: Fully Convolutional Neural Networks for Volumetric Medical Imag

chazutsu photo from Kaikado, traditional Japanese chazutsu maker chazutsu is the dataset downloader for NLP. import chazutsu r = chazutsu.data

TorchGeo is a PyTorch domain library, similar to torchvision, that provides datasets, transforms, samplers, and pre-trained models specific to geospatial data.

S3-plugin is a high performance PyTorch dataset library to efficiently access datasets stored in S3 buckets.

EfficientSegmentation Introduction EfficientSegmentation is an open source, PyTorch-based segmentation framework for 3D medical image. Features A whol

MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning [MedIA or Arxiv] and [Demo] This repository pr

Roboflow makes managing, preprocessing, augmenting, and versioning datasets for computer vision seamless. This is the official Roboflow python package that interfaces with the Roboflow API.

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

BanglaBERT This repository contains the official release of the model "BanglaBERT" and associated downstream finetuning code and datasets introduced i