Python Medical-datasets Resources

BlosSOM 🌼 BlosSOM is a graphical environment for running semi-supervised dimensionality reduction with EmbedSOM. You can use it to explore multidimen

Code-and-Dataset-for-CapSal This project provides the code and datasets for 'CapSal: Leveraging Captioning to Boost Semantics for Salient Object Detec

Vision Transformer for Small-Size Datasets Seung Hoon Lee and Seunghyun Lee and Byung Cheol Song | Paper Inha University Abstract Recently, the Vision

Medical-Insurance-Cost-Prediction-using-Machine-learning - Here in this project, I will use regression analysis to predict medical insurance cost for people in different regions, and based on several aspects like : Smoking, Number of children, BMI...etc.

styleGAN2-ADA-training-jupyter Training custom datasets in styleGAN2-ADA on Jupyter Official StyleGAN2-ADA by NIVIDIA Paper Training Generative Advers

High resolution disentanglement datasets This repository contains the Falcor3D and Isaac3D datasets, which present a state-of-the-art challenge for co

Finding data is one thing. Getting it ready for analysis is another. Acquiring, cleaning, standardizing and importing publicly available data is time

Python script that analyses the given datasets and comes up with the best polynomial regression representation with the smallest polynomial degree possible, to be the most reliable with the least complexity possible

Notebooks A NASA MEaSUREs project to provide automated, low latency, global glacier flow and elevation change datasets This repository provides tools

Synthetic dataset rendering Framework for producing the synthetic datasets used in: How Useful is Self-Supervised Pretraining for Visual Tasks? Alejan

Contrastive learning of global and local features for medical image segmentation with limited annotations The code is for the article "Contrastive lea

Official repository of the paper Learning to Regress 3D Face Shape and Expression from an Image without 3D Supervision

Medical-Image-Triage-and-Classification-System-Based-on-COVID-19-CT-and-X-ray-Sc

Hub is a dataset format with a simple API for creating, storing, and collaborating on AI datasets of any size. The hub data layout enables rapid transformations and streaming of data while training models at scale. Hub is used by Google, Waymo, Red Cross, Oxford University, and Omdena.

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

softcatala-web-dataset This repository contains Sofcatalà web site content (articles and programs descriptions). Dataset are available in the dataset

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

xmldataset: simple xml parsing 🗃️ XML Dataset: simple xml parsing Documentation: https://xmldataset.readthedocs.io A Python library that simplifies t

FFA-IR The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark." The framework is inheri

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

ckanext-sitesearch Index different CKAN entities in Solr, not just datasets Requirements This extension requires CKAN 2.9 or higher and Python 3 Featu

546 Final Project: Masked Autoencoder Haoran Tang, Qirui Wu 1. Training To train the network, please run mae_pretraining.py. Please modify folder path

doccano doccano is an open source text annotation tool for humans. It provides annotation features for text classification, sequence labeling and sequ

AKShare is an elegant and simple financial data interface library for Python, built for human beings

Named-Entity-Recognition-NER-Papers by Pengfei Liu, Jinlan Fu and other contributors. An elaborate and exhaustive paper list for Named Entity Recognit

MISSFormer Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_add

speech-nlp-datasets Contains links to publicly available datasets for modeling various health outcomes using speech and language. Speech-based Corpora

CPPE - 5 CPPE - 5 (Medical Personal Protective Equipment) is a new challenging dataset with the goal to allow the study of subordinate categorization

🏆 Most Common Words Multilingual 5000 most frequent words in 109 languages. Uses wordfrequency.info as a source. 🔗 License source code license data

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet). [New] Note that all the emails about the download permission o

demir.ai Dataset Operations With this application, you can have the empty values (nan/null) deleted or filled before giving your dataset to machine le

MT-UNet Update 2021/11/19 Thank you for your interest in our work. We have uploaded the code of our MTUNet to help peers conduct further research on i

Splinter This repository contains the code, models and datasets discussed in our paper "Few-Shot Question Answering by Pretraining Span Selection", to

Tensor2Tensor Tensor2Tensor, or T2T for short, is a library of deep learning models and datasets designed to make deep learning more accessible and ac

TransLink Spatial Data What: TransLink is the statutory public transit authority for the Metro Vancouver region. This GitHub repository is a collectio

Aspect-Category-Opinion-Sentiment (ACOS) Quadruple Extraction This repo contains the data sets and source code of our paper: Aspect-Category-Opinion-S

KGQA Datasets Brief Introduction This repository is a collection of existing KGQA datasets in the form of the huggingface datasets library, aiming to

Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels The implementation of Hypernet-Ensemble Le

cleanX CleanX is an open source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological

HEART DISEASE AI DATATHON 2021 [Eng] / [Kor] #English This is an AI diagnosis modeling contest that uses the heart disease echocardiography and electr

Easy Language Model Pretraining leveraging Huggingface's Transformers and Datasets What is LASSL • How to Use What is LASSL LASSL은 LAnguage Semi-Super

An Open Source Project from the Data to AI Lab, at MIT Website: https://sdv.dev Documentation: https://sdv.dev/SDV User Guides Developer Guides Github

Template for Data Science Project This repo aims to give a robust starting point to any Data Science related project. It contains readymade tools setu

Deep Learning Dataset Maker Deep Learning Datasets Maker is a QGIS plugin to make datasets creation easier for raster and vector data. How to use Down

Learning Imbalanced Datasets with Label-Distribution-Aware Margin Loss Kaidi Cao, Colin Wei, Adrien Gaidon, Nikos Arechiga, Tengyu Ma This is the offi

Scene Text Recognition Recommendations Everythin about Scene Text Recognition SOTA • Papers • Datasets • Code Contents 1. Papers 2. Datasets 2.1 Synth

Sequential Recommendation Datasets This repository collects some commonly used sequential recommendation datasets in recent research papers and provid

This repository contains data and code for our EMNLP 2021 paper Models and Datasets for Cross-Lingual Summarisation. Please contact me at [email protected]

Scripts for QA and trigger preprocessing of NIMH HV Protocol Install pip install git+https://github.com/nih-megcore/hv_proc Usage hv_process.py will

Simple pipeline for experimenting with radiomics features Installation git clone https://github.com/piotrekwoznicki/ClassyRadiomics.git cd classrad pi

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

Simple PyTorch Implementation of "Grokking" Implementation of Grokking: Generalization Beyond Overfitting on Small Algorithmic Datasets Usage Running

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of thi

AI Fairness 360 (AIF360) The AI Fairness 360 toolkit is an extensible open-source library containg techniques developed by the research community to h

Joint t-sne This is the implementation for paper Joint t-SNE for Comparable Projections of Multiple High-Dimensional Datasets. abstract: We present Jo

Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation This repository contains the Pytorch implementation of the proposed

farabio is a minimal PyTorch toolkit for out-of-the-box deep learning support in biomedical imaging. For further information, see Wikis and Docs.

Mars tiler Mars Tiler is a prototype web application that serves tiles from cloud-optimized GeoTIFFs, with an emphasis on supporting planetary dataset

K-BERT Sorce code and datasets for "K-BERT: Enabling Language Representation with Knowledge Graph", which is implemented based on the UER framework. R

PLUR (Programming-Language Understanding and Repair) is a collection of source code datasets suitable for graph-based machine learning. We provide scripts for downloading, processing, and loading the datasets. This is done by offering a unified API and data structures for all datasets.

Re-implementation of the paper 'Grokking: Generalization beyond overfitting on small algorithmic datasets' Paper Original paper can be found here Data

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

doccano doccano is an open source text annotation tool for humans. It provides annotation features for text classification, sequence labeling and sequ

DT-Fixup Optimizing Deeper Transformers on Small Datasets Paper published in ACL 2021: arXiv Detailed instructions to replicate our results in the pap

Website • Docs • Twitter • Join Slack Community What is Label Studio? Label Studio is an open source data labeling tool. It lets you label data types

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

DALLE tools DALLE-tools is a github repository with useful tools to categorize, annotate or check the sanity of your datasets. Installation Just clone

vision Datasets, Transforms and Models specific to Computer Vision Installation First install the nightly version of OneFlow python3 -m pip install on

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

ClimART - A Benchmark Dataset for Emulating Atmospheric Radiative Transfer in Weather and Climate Models Official PyTorch Implementation Using deep le

Traditional Chinese Text Recognition Dataset: Synthetic Dataset and Labeled Data Authors: Yi-Chang Chen, Yu-Chuan Chang, Yen-Cheng Chang and Yi-Ren Ye

Experimenting with computer vision techniques to generate annotated image datasets from gameplay recordings automatically. The collected data will then be used to train a deep neural network that can detect enemy player models in real time, during gameplay. Finally, a virtual input device will adjust the player's crosshair based on live detections for greater accuracy.

Veri Setinizi Yolov5 Formatına Dönüştürün! Bu Repo da Neler Var? Xml Formatındaki Veri Setini .Txt Formatına Çevirme Xml Formatındaki Dosyaları Silme

Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make

An Open Source Project from the Data to AI Lab, at MIT Metrics for Synthetic Data Generation Projects Website: https://sdv.dev Documentation: https://

NVTabular is a feature engineering and preprocessing library for tabular data designed to quickly and easily manipulate terabyte scale datasets used to train deep learning based recommender systems.

VGGVox models for speaker identification and verification This directory contains code to import and evaluate the speaker identification and verificat

R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod

FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

Impyute is a library of missing data imputation algorithms. This library was designed to be super lightweight, here's a sneak peak at what impyute can do.

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

largeVis This is an implementation of the largeVis algorithm described in (https://arxiv.org/abs/1602.00370). It also incorporates: A very fast algori

DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is

slue-toolkit We introduce Spoken Language Understanding Evaluation (SLUE) benchmark. This toolkit provides codes to download and pre-process the SLUE

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

Deep Learning with PyTorch made easy 🚀 ! Carefree? carefree-learn aims to provide CAREFREE usages for both users and developers. It also provides a c

GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat

AP-10K: A Benchmark for Animal Pose Estimation in the Wild Introduction | Updates | Overview | Download | Training Code | Key Questions | License Intr

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me

Created two information products for GameStop. Using Python, wrangled and unpivoted datasets, and created Tableau dashboards.

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

Neurons Dataset API - The official dataloader and visualization tools for Neurons Datasets. Introduction We propose our dataloader API for loading and

UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf