Python Systems-biology-simulation Resources

Le problème de Monty Hall C'est un jeu télévisé où il y a trois portes sur le plateau de jeu. Seule une de ces portes cache un trésor. Il n'y a rien d

CrossHair An analysis tool for Python that blurs the line between testing and type systems. THE LATEST NEWS: Check out the new crosshair cover command

Detection of Fake Reviews on Online Review Platforms using Deep Learning Architectures Dataset: https://s3.amazonaws.com/fast-ai-nlp/yelp_review_polar

cluster-link-prediction This repository provides some of the code implemented and the data used for the work proposed in "A Cluster-Based Trip Predict

GAN-STEM-Conv2MultiSlice GAN method to help covert lower resolution STEM images generated by convolution methods to higher resolution STEM images gene

Static Token And Credential Scanner CI Integrations What is it? STACS is a YARA

Awesome Artificial Intelligence, Machine Learning and Deep Learning as we learn it. Study notes and a curated list of awesome resources of such topics.

Conversational AI ChatBot Intelligent ChatBot built with Microsoft's DialoGPT transformer to make conversations with human users! In this project? Thi

Distributed Systems Algorithms ISIS algorithm In an asynchronous system that kee

Tom the AI (version 0.82) WARNING: This software is not yet ready to use, I'm still setting up the GitHub repository. Should be ready in a few days. T

GHDL Interactive Simulation This is an interactive test bench for a simple VHDL adder. It uses GHDL to elaborate/run the simulation. It is coded in Py

recsys_metrics An efficient PyTorch implementation of the evaluation metrics in recommender systems. Overview • Installation • How to use • Benchmark

Introduction QRec is a Python framework for recommender systems (Supported by Python 3.7.4 and Tensorflow 1.14+) in which a number of influential and

Numerical Bric-a-Brac Collections of numerical techniques with Python and standard computational packages (Numpy, SciPy, Numba, Matplotlib ...). Diffe

ProjPicker ProjPicker (projection picker) is a Python module that allows the user to select all coordinate reference systems (CRSs) whose extent compl

Before requesting support please consider that this software is not actively developed. I created it in 2014 for managing my Alienware M14X-R1 (where

3D-Lorenz-Attractor-simulation-with-python Animação 3D da trajetória do Atrator de Lorenz, implementada em Python usando o método de Runge-Kutta de 4ª

Monty Hall Problem Simulation monty_hall_sim is a brute-force method of determining the optimal strategy for the Monty Hall Problem. Usage Set boolean

NeoDTI NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions (Bioinformatics).

CADLabs Ethereum Economic Model A modular dynamical-systems model of Ethereum's validator economics, based on the open-source Python library radCAD, a

MeerKATgen MeerKAT radio telescope simulation package. Designed with performance in mind and utilizes Just in time compile (JIT) and XLA backed vectro

A cool little repl-based simulation written in Python planned to integrate machine-learning into itself to have AI battle to the death before your eye

rosny is a lightweight library for building concurrent systems. Installation Tested on: Linux Python = 3.6 From pip: pip install rosny From source: p

EIP: Elastic Interaction of Particles Code release for "Elastic Tactile Simulation Towards Tactile-Visual Perception", in ACMMM (Oral) 2021. By Yikai

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DBHTermEcIbP Linux commands Interpreter for Windows and Mac based systems using Python Basic Linux commands supported viewing current working director

PyBERT PyBERT is a serial communication link bit error rate tester simulator with a graphical user interface (GUI). It uses the Traits/UI package of t

Object oriented discrete event simulation and animation in Python. Includes process control features, resources, queues, monitors. statistical distrib

Thespian Actor Library This library provides the framework of an Actor model for use by applications implementing Actors. Thespian Site with Documenta

harold A control systems package for Python=3.6. Introduction This package is written with the ambition of providing a full-fledged control systems s

Welcome to Spokestack Python! This library is intended for developing voice interfaces in Python. This can include anything from Raspberry Pi applicat

Unzip JP GUI Unzip Japanese Shift-JIS zip archives on non-Japanese systems. This script unzips the file while converting the file names from Shift-JIS

PwnLnX An advanced multi-threaded, multi-client python reverse shell for hacking linux systems. There's still more work to do so feel free to help out

Prescribed-time Control Prescribed-time control (PTC) blocks in Simulink environment, MATLAB R2020b. For more theoretical details, refer to the papers

DHAP Source code of SIGIR2021 Long Paper: One Chatbot Per Person: Creating Personalized Chatbots based on Implicit User Profiles . Preinstallation Fir

Jomini v0.1.4 Jomini creates military simulations by using mathematical combat models. Designed to be helpful for game developers, students, history e

PyDynamica PyDynamica is a pure python implementation of Sociodynamica, a virtual environment to simulate a simple economy with minimal dependencies.

Code Artifacts Code artifacts for the submission "Mind the Gap! A Study on the Transferability of Virtual vs Physical-world Testing of Autonomous Driv

ReaDDy (Reaction Diffusion Dynamics) is an open source particle based reaction-diffusion simulator that can be configured and run via Python. Currentl

pyscreener A pythonic interface to high-throughput virtual screening software Overview This repository contains the source of pyscreener, both a libra

NetKet NetKet is an open-source project delivering cutting-edge methods for the study of many-body quantum systems with artificial neural networks and

Lens by Credo AI - Responsible AI Assessment Framework Lens is a comprehensive assessment framework for AI systems. Lens standardizes model and data a

De(e)pendable Distributed Control of Port-Hamiltonian Systems (DeepDisCoPH) This repository is associated to the paper [1] and it contains: The full p

Description This script helps the user to update Linux and Mac systems through the terminal. All the user has to install some requirements and then ru

Python script to create a TOPAS-readable simulation file descriring a Multi-Leaf-Collimator. Builds the MLC using the data from a 3D .stl file.

RCD: Relation Map Driven Cognitive Diagnosis for Intelligent Education Systems This is our implementation for the paper: Weibo Gao, Qi Liu*, Zhenya Hu

topas-create-graphs A script to automatically plot the results of a topas simulation Works for percentage depth dose (pdd) and dose profiles (dp). Dep

topas-merge-simulations Python script to combine the statistical results of a TOPAS simulation that was split up into multiple batches At the top of t

FREE_7773 Repo containing material for the NYU class (Master of Engineering) I teach on NLP, ML Sys etc. For context on what the class is trying to ac

RLBot Python bindings for rl_ball_sym 0.6 Prerequisites: Rust & Cargo Build Tools for Visual Studio RLBot - Verify that the file %localappdata%\RLBotG

DPDispatcher DPDispatcher is a python package used to generate HPC(High Performance Computing) scheduler systems (Slurm/PBS/LSF/dpcloudserver) jobs in

Documentation | External Resources | Datasets | Examples ChemicalX is a deep learning library for drug-drug interaction, polypharmacy side effect and

gym-idsgame An Abstract Cyber Security Simulation and Markov Game for OpenAI Gym gym-idsgame is a reinforcement learning environment for simulating at

Nebula is an extremely-fast end-to-end interactive big data analytics solution. Nebula is designed as a high-performance columnar data storage and tabular OLAP engine.

qunomon Description A testbed for testing and managing AI system qualities. Demo Sorry. Not deployment public server at alpha version. Requirement Ins

Blockchain-enabled Server-less Federated Learning Repository containing the files used to reproduce the results of the publication "Blockchain-enabled

Introduction QRec is a Python framework for recommender systems (Supported by Python 3.7.4 and Tensorflow 1.14+) in which a number of influential and

OstrichRL This is the repository accompanying the paper OstrichRL: A Musculoskeletal Ostrich Simulation to Study Bio-mechanical Locomotion. It contain

Fine-grained Post-training for Multi-turn Response Selection Implements the model described in the following paper Fine-grained Post-training for Impr

WideLinears Pytorch parallel Neural Networks A package of pytorch modules for fast paralellization of separate deep neural networks. Ideal for agent-b

Full Spectrum Bioinformatics is a free online text designed to introduce key topics in Bioinformatics using the Python programming language. The text is written in interactive Jupyter Notebooks, which allow you to try out and modify example code and analyses.

PyNBoids A Python Boids Simulation This is a Boids simulation, written in Python3, with Pygame2 and NumPy. To use: Save the pynboids_sp.py file (and n

Notice: Support for Python 3.6 will be dropped in v.0.2.1, please plan accordingly! Efficient and Scalable Physics-Informed Deep Learning Collocation-

NeuralPDE NeuralPDE.jl is a solver package which consists of neural network solvers for partial differential equations using scientific machine learni

COSCO Framework COSCO is an AI based coupled-simulation and container orchestration framework for integrated Edge, Fog and Cloud Computing Environment

A python package that extends Google Earth Engine GitHub: https://github.com/davemlz/eemont Documentation: https://eemont.readthedocs.io/ PyPI: https:

CAT (Improving Machine Translation Systems via Isotopic Replacement) Machine translation plays an essential role in people’s daily international commu

iDracPowerMonitorMQTT This script publishes iDrac power draw data for iDrac 6 enabled servers to an MQTT broker. This can be used to integrate the pow

HETU Documentation | Examples Hetu is a high-performance distributed deep learning system targeting trillions of parameters DL model training, develop

FuxiCTR This repo is the community dev version of the official release at huawei-noah/benchmark/FuxiCTR. Click-through rate (CTR) prediction is an cri

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

A repository built on the Flow software package to explore cyber-security attacks on intelligent transportation systems.

CONCEPT (COsmological N-body CodE in PyThon) is a free and open-source simulation code for cosmological structure formation. The code should run on any Linux system, from massively parallel computer clusters to laptops.

Cylc: a workflow engine for cycling systems. Repository master branch: core meta-scheduler component of cylc-8 (in development); Repository 7.8.x branch: full cylc-7 system.

PythonPercolation Percolation simulation using python Exemple de percolation : Etude statistique sur le pourcentage de remplissage jusqu'à percolation

PyPowSyBl The PyPowSyBl project gives access PowSyBl Java framework to Python developers. This Python integration relies on GraalVM to compile Java co

Monte Carlo python simulation Install linux dependencies sudo apt update sudo apt install build-essential \ software-properties-commo

Jiminy is a fast and portable cross-platform open-source simulator for poly-articulated systems. It was built with two ideas in mind: provide a fast y

hooman ~ pygame for humans pip install hooman join discord: https://discord.gg/Q23ATve The package for clearer, shorter and cleaner PyGame codebases!

finitevolume2-python Finite Volume simulation of the Raleigh-Taylor Instability Create Your Own Finite Volume Fluid Simulation (With Python): Part 2 B

Neural Fluid Fields This is a small library for doing fluid simulation with neural fields. Check out our review paper, Neural Fields in Visual Computi

MDAnalysis Repository README [*] MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale,

The devkit of the nuPlan dataset.

PixMix Introduction In real-world applications of machine learning, reliable and safe systems must consider measures of performance beyond standard te

BIGDATA SIMULATION LIBRARY OF DREAM BY SANDMAN BOOKS ================= Solution Architecture Description In the realm of Dreaming, its ruler SANDMAN,

Pachyderm: The Data Foundation for Machine Learning Pachyderm provides the data layer that allows machine learning teams to productionize and scale th

Simulation of moving particles under microscopic imaging Install scipy numpy scikit-image tiffile Run python simulation.py Read result https://imagej

SEE Injection Framework 2021 This repository contains two Single Event Effect (SEE) injection platforms. The first one is called BFSP - "Bitflip Fault

Complex Answer Generation For Conversational Search Systems. Code for Does Structure Matter? Leveraging Data-to-Text Generation for Answering Complex

Bayesian Deep Learning for Manufacturing 2.0 (dlmfg) Object Shape Error Response (OSER) Digital Lifecycle Management - In Process Quality Improvement

Adversarial Differentiable Data Augmentation This repository provides the official PyTorch implementation of the ICRA 2021 paper: Adversarial Differen

Disimpy Disimpy is a Python package for generating simulated diffusion-weighted MR signals that can be useful in the development and validation of dat

BFSP [v1.05] Bitflip Fault Simulation Platform by Daniele Rizzieri (2021) The platform injects a random bitflip in each of N copies of a binary file.

Cloth Simulation via Taichi

SelfDrive_AI Reinforcement learning for self-driving in a 3D simulation (Created using UNITY-3D) 1. Requirements for the SelfDrive_AI Gym You need Pyt

recmetrics A python library of evalulation metrics and diagnostic tools for recommender systems. **This library is activly maintained. My goal is to c

TorchRec (Experimental Release) TorchRec is a PyTorch domain library built to provide common sparsity & parallelism primitives needed for large-scale

Off-Policy-2-Stage This repo provides a PyTorch implementation of the MovieLens experiments for the following paper: Off-policy Learning in Two-stage

Attractors A small module that provides functions and classes for very efficient simulation and rendering of iterated function systems; dynamical syst

EP2520_ACME_Project Repository for a project of the course EP2520 Building Networked Systems Security in Royal Institute of Technology (KTH), Stockhol