Python Systems-biology-simulation Resources

PersonaGPT An open-domain conversational agent with many personalities PersonaGPT is an open-domain conversational agent cpable of decoding personaliz

AB-TRAP: building invisibility shields to protect network devices The AB-TRAP framework is applicable to the development of Network Intrusion Detectio

elmer_circuitbuilder Python module for creating the circuit simulation definitions for Elmer FEM. The circuit definitions enable easy setup of coils (

(Py)TOD: Tensor-based Outlier Detection, A General GPU-Accelerated Framework Background: Outlier detection (OD) is a key data mining task for identify

PersonaGPT An open-domain conversational agent with many personalities PersonaGPT is an open-domain conversational agent cpable of decoding personaliz

PyFstab Generator PyFstab Generator is a small Python script to write and generate /etc/fstab files based on yaml file on Unix-like systems. NOTE : Th

Programação de Sistemas Robóticos Miguel Riem Oliveira Universidade de Aveiro 2021-2022 Projeto AtlasCar Projecto RACE IROS 2014 AtlasCar2 ATOM IROS 2

A totally unrealistic cell growth/reproduction simulation.

This repository contains code for training and evaluating FlingBot in both simulation and real-world settings on a dual-UR5 robot arm setup for Ubuntu 18.04

phpipam-dhcp-config-generator This will generate a very basic DHCP config with use of PHPIPAM systems. Requirements PHPIPAM Custom Fields domain_name

Kaggle: Cell Instance Segmentation The goal of this challenge is to detect cells in microscope images. with simple view on how many cels have been ann

chimera-bootstrap This is a simple tool for bootstrapping Chimera systems from binaries. For source builds, you want cports. Simple usage: $ # run as

AMAZ3DSim AMAZ3DSim is a lightweight python-based 3D network multi-agent simulator. It uses a cell-based congestion model. It calculates risk, battery

solar-system-pygame Controls UP/DOWN for Emulation Speed Control ESC for Pause/Unpause q to Quit c or ESC again to Continue LEFT CLICK to Add an orbit

Ackermann Line Follower Robot This is a simulation of a line follower robot that works with steering control based on Stanley: The Robot That Won the

DeLag: Detecting Latency Degradation Patterns in Service-based Systems Replication package of the work "DeLag: Detecting Latency Degradation Patterns

FaPro Free,Cross-platform,Single-file mass network protocol server simulator 中文Readme Description FaPro is a Fake Protocol Server tool, Can easily sta

collie Collie is a library for preparing, training, and evaluating implicit deep learning hybrid recommender systems, named after the Border Collie do

Automatic-precautionary-guard automated systems to assist guarding corona Virus precautions for Closed Rooms (e.g. Halls, offices, etc..) what is this

Distributed Synchronization for Python Tutti is a nearly drop-in replacement for python's built-in synchronization primitives that lets you fearlessly

Welcome to arknights-gacha repository This is my shameless attempt of simulating Arknights gacha. Current supported banner types (with potential bugs)

dm_control: DeepMind Infrastructure for Physics-Based Simulation. DeepMind's software stack for physics-based simulation and Reinforcement Learning en

PyTorch code for DriveGAN: Towards a Controllable High-Quality Neural Simulation

NVIDIA Merlin NVIDIA Merlin is an open source library designed to accelerate recommender systems on NVIDIA’s GPUs. It enables data scientists, machine

Robotic Arm Simulation in ROS2 and Gazebo General Overview This repository includes: First, how to simulate a 6DoF Robotic Arm from scratch using GAZE

pykoop pykoop is a Koopman operator identification library written in Python. It allows the user to specify Koopman lifting functions and regressors i

No RL No Simulation (NRNS) Official implementation of the NRNS paper: No RL, No Simulation: Learning to Navigate without Navigating NRNS is a heriarch

AequeVox Replication Package for AequeVox:Automated Fariness Testing for Speech Recognition Systems README under development. Python Packages Required

About The Project This is a simple DHCP server and client simulation. I implemented it for computer network course spring 2021 The client can request

Accuracy-Diversity Trade-off in Recommender Systems via Graph Convolutions This repository contains the code of the paper "Accuracy-Diversity Trade-of

DANSER-WWW-19 This repository holds the codes for Dual Graph Attention Networks for Deep Latent Representation of Multifaceted Social Effects in Recom

A library of Recommender Systems This repository provides a summary of our research on Recommender Systems. It includes our code base on different rec

Detecting Beneficial Feature Interactions for Recommender Systems (L0-SIGN) This is our implementation for the paper: Su, Y., Zhang, R., Erfani, S., &

Anomaly Detection in Multi-Agent Trajectories for Automated Driving This is the official project page including the paper, code, simulation, baseline

Perspective-taking and Pragmatics for Generating Empathetic Responses Focused on Emotion Causes Official PyTorch implementation and EmoCause evaluatio

Pendulum project, built using pygame and math modules.

Current build status All platforms: Current release info Name Downloads Version Platforms Hapi - Hydrological library for Python Hapi is an open-sourc

Mathematical modeling is a powerful method for the analysis of complex biological systems. Although there are many researches devoted on produ

pulse2percept: A Python-based simulation framework for bionic vision Retinal degenerative diseases such as retinitis pigmentosa and macular degenerati

Endpoints Quickest API builder in the West! Endpoints is a lightweight REST api framework written in python and used in multiple production systems th

EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.

Demonstrate that UMAP and Leiden analysis is not reproducible between different cpu architectures.

SmartSim Example Zoo This repository contains CrayLabs and user contibuted examples of using SmartSim for various simulation and machine learning appl

MosaicML Composer contains a library of methods, and ways to compose them together for more efficient ML training.

Simulation-based inference for the Galactic Center Excess Siddharth Mishra-Sharma and Kyle Cranmer Abstract The nature of the Fermi gamma-ray Galactic

IsoGCN The official implementation of IsoGCN, presented in the ICLR2021 paper Isometric Transformation Invariant and Equivariant Graph Convolutional N

一款基于Qt与OpenCV的仿真数字示波器

Custom Selenium Chromedriver | Zero-Config | Passes ALL bot mitigation systems (like Distil / Imperva/ Datadadome / CloudFlare IUAM)

Abstract We present extensive empirical evidence showing that current Bayesian simulation-based inference algorithms are inadequate for the falsificat

DaDRA (day-druh) is a Python library for Data-Driven Reachability Analysis. The main goal of the package is to accelerate the process of computing estimates of forward reachable sets for nonlinear dynamical systems.

1 Python for Power System Analysis Contents 1 Python for Power System Analysis 1.1 About 1.2 Documentation 1.3 Functionality 1.4 Example scripts as Ju

MosaicML Composer MosaicML Composer contains a library of methods, and ways to compose them together for more efficient ML training. We aim to ease th

A Final Year Project in CUHK, Autumn 2021 Network Dynaimcs Simulation Files param.h edit all the variables & settings here simulate.c the main program

Collaborative-driven Quantum Feature Selection This repository was developed by Riccardo Nembrini, PhD student at Politecnico di Milano. See the websi

CottonWeeds Deep learning models for classification of 15 common weeds in the southern U.S. cotton production systems. requirements pytorch torchsumma

AWS DeepRacer Overview The AWS DeepRacer Evo vehicle is a 1/18th scale Wi-Fi enabled 4-wheel ackermann steering platform that features two RGB cameras

Few-Shot Bot: Prompt-Based Learning for Dialogue Systems This repository includes the dataset, experiments results, and code for the paper: Few-Shot B

covert-tube A program to control systems remotely by uploading videos to Youtube using Python to create the videos and the listener, emulating some ma

Python-Orbit-Sim A 2D physics sim for orbits. Made using pygame and tkinter. High degree of intractability, allowing you to create celestial bodies of

Hydra: An Extensible Fuzzing Framework for Finding Semantic Bugs in File Systems Paper Finding Semantic Bugs in File Systems with an Extensible Fuzzin

Overview of liionpack liionpack takes a 1D PyBaMM model and makes it into a pack. You can either specify the configuration e.g. 16 cells in parallel a

PhyCRNet Physics-informed convolutional-recurrent neural networks for solving spatiotemporal PDEs Paper link: [ArXiv] By: Pu Ren, Chengping Rao, Yang

SurRoL IROS 2021 SurRoL: An Open-source Reinforcement Learning Centered and dVRK Compatible Platform for Surgical Robot Learning Features dVRK compati

pcnaDeep: a deep-learning based single-cell cycle profiler with PCNA signal Welcome! pcnaDeep integrates cutting-edge detection techniques with tracki

Control System Packer is a lightweight, low-level program to transform energy equations into the compact libraries for control systems. Packer supports Python 🐍 , C 💻 and C++ 💻 libraries.

An event-based multi-device simulation framework providing configuration and orchestration of complex multi-device simulations.

Overview PowerGym is a Gym-like environment for Volt-Var control in power distribution systems. The Volt-Var control targets minimizing voltage violat

Code and dataset for the EMNLP 2021 Finding paper "Can NLI Models Verify QA Systems’ Predictions?"

Perspective-taking and Pragmatics for Generating Empathetic Responses Focused on Emotion Causes Official PyTorch implementation and EmoCause evaluatio

A ready-to-use curated list of Spectral Indices for Remote Sensing applications. GitHub: https://github.com/davemlz/awesome-ee-spectral-indices Docume

mc3g Monte Carlo simulation of 3G rules This project contains the Python code to do simulations of events according to the 3G rule (in German: "Geimpf

solar-system Simulation of the solar system using various nummerical methods Download the repo Make shure matplotlib, scipy etc. are installed execute

BEM(building energy model)-SIM-APP The is a web app presenting my research in BEM(building energy model) calibration. You can play around with some pa

Voting This is a repository for voting software built using Choice Coin on the Algorand Network. Our voting software is centered around Decentralized

QRec is a Python framework for recommender systems (Supported by Python 3.7.4 and Tensorflow 1.14+) in which a number of influential and newly state-of-the-art recommendation models are implemented. QRec has a lightweight architecture and provides user-friendly interfaces. It can facilitate model implementation and evaluation.

SGLKT-VisDial Pytorch Implementation for the paper: Reasoning Visual Dialog with Sparse Graph Learning and Knowledge Transfer Gi-Cheon Kang, Junseok P

LiDAR fog simulation Created by Martin Hahner at the Computer Vision Lab of ETH Zurich. This is the official code release of the paper Fog Simulation

Embark is being developed to provide the firmware security analyzer emba as a containerized service and to ease accessibility to emba regardless of system and operating system.

A "gym" style toolkit for building lightweight Neural Architecture Search systems

Hello 🤟 #Team-Greider The team of 20 people for HackBio'2021 Virtual Bioinformatics Internship 💝 🖨️ 👨‍💻 HackBio: https://thehackbio.com 💬 Ask us

ACSC Automatic extrinsic calibration for non-repetitive scanning solid-state LiDAR and camera systems. System Architecture 1. Dependency Tested with U

✨A collaborative music playing systems🎶 where multiple guests can join a room ➡🚪 and enjoy the song🎧 being played.

This project is a community effort in constructing and maintaining an up-to-date beginner-friendly introduction to AutoML, focusing on practical systems. AutoML is a big field, and continues to grow daily. Hence, we cannot hope to provide a comprehensive description of every interesting idea or approach available.

Proteno This is the data release associated with the corresponding NAACL 2021 Paper - Proteno: Text Normalization with Limited Data for Fast Deploymen

OpenCDA OpenCDA is a SIMULATION tool integrated with a prototype cooperative driving automation (CDA; see SAE J3216) pipeline as well as regular autom

TensorFlow Ranking is a library for Learning-to-Rank (LTR) techniques on the TensorFlow platform

attractors Attractors is a package for simulation and visualization of strange attractors. Installation The simplest way to install the module is via

NeuralWOZ This code is official implementation of "NeuralWOZ: Learning to Collect Task-Oriented Dialogue via Model-based Simulation". Sungdong Kim, Mi

Learning to Communicate with Deep Multi-Agent Reinforcement Learning This is a PyTorch implementation of the original Lua code release. Overview This

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators. It's also a suite of learning algorithms to train agents to operate in these environments (PPO, SAC, evolutionary strategy, and direct trajectory optimization are implemented).

Monitor the status of computers on a network using the DDS function of ROS2.

Mava: a research framework for distributed multi-agent reinforcement learning Table of Contents Overview Getting Started Supported Environments System

This is my reading list for my PhD in AI, NLP, Deep Learning and more.

KCMTicketFormatter This tools takes the output from https://github.com/fireeye/SSSDKCMExtractor and turns it into properly formatted CCACHE files for

Dpex——用户无感知分布式数据预处理组件 一、前言 随着GPU与CPU的算力差距越来越大以及模型训练时的预处理Pipeline变得越来越复杂，CPU部分的数据预处理已经逐渐成为了模型训练的瓶颈所在，这导致单机的GPU配置的提升并不能带来期望的线性加速。预处理性能瓶颈的本质在于每个GPU能够使用的C

How Robust are Fact Checking Systems on Colloquial Claims? Official PyTorch implementation of our NAACL paper: Byeongchang Kim*, Hyunwoo Kim*, Seokhee

ASVspoof 2021 Baseline Systems Baseline systems are grouped by task: Speech Deepfake (DF) Logical Access (LA) Physical Access (PA) Please find more de

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators. It's also a suite of learning algorithms to train agents to operate in these environments (PPO, SAC, evolutionary strategy, and direct trajectory optimization are implemented).

Recommendation systems are among most widely preffered marketing strategies. Their popularity comes from close prediction scores obtained from relationships of users and items. In this project, two recommendation systems are used for two different datasets: Association Recommendation Learning and Collaborative Filtering. Please read the description for more info.

FINN.no Recommender Systems Slate Dataset This repository accompany the paper "Dynamic Slate Recommendation with Gated Recurrent Units and Thompson Sa