Python Systems-biology-simulation Resources

Home Install Documentation Slack Invite Cray Labs SmartSim SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and Ten

Megaverse Megaverse is a new 3D simulation platform for reinforcement learning and embodied AI research. The efficient design of the engine enables ph

SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and TensorFlow, in High Performance Computing (HPC) simulations and workloads.

Smoking Simulation is an app to simulate the spreading of smokers and non-smokers, their interactions and population during certain

The MDAkit for membrane curvature analysis is part of the Google Summer of Code program and it is linked to a Code of Conduct.

What is being transferred in transfer learning? This repo contains the code for the following paper: Behnam Neyshabur*, Hanie Sedghi*, Chiyuan Zhang*.

LSO - Linux Swap Operator Türkçe - LSO Nedir? LSO, diğer adıyla Linux Swap Operator Linux işletim sistemleri için Swap alanını yönetebileceğiniz hem G

Intruder-Detection Intruder detection systems are common place now, and readily available in industry, but how do they work? They must detect people a

Fusion-DHL: WiFi, IMU, and Floorplan Fusion for Dense History of Locations in Indoor Environments Paper: arXiv (ICRA 2021) Video : https://youtu.be/CC

Action-Based Conversations Dataset (ABCD) This respository contains the code and data for ABCD (Chen et al., 2021) Introduction Whereas existing goal-

Notspot robot simulation - Python version This repository contains all the files and code needed to simulate the notspot quadrupedal robot using Gazeb

pyRigidBody3d A simple 3D rigid body simulation written in python

When2com: Multi-Agent Perception via Communication Graph Grouping This is the PyTorch implementation of our paper: When2com: Multi-Agent Perception vi

SpiderBot_DeepRL Title: Implementation of Single and Multi-Agent Deep Reinforcement Learning Algorithms for a Walking Spider Robot Authors(s): Arijit

Collaborative Variational Bandwidth Auto-encoder The codes are associated with the following paper: Collaborative Variational Bandwidth Auto-encoder f

Asymmetric Tri-training for Debiasing Missing-Not-At-Random Explicit Feedback About This repository accompanies the real-world experiments conducted i

Stream Framework Activity Streams & Newsfeeds Stream Framework is a Python library which allows you to build activity streams & newsfeeds using Cassan

paper list in the area of reinforcenment learning for recommendation systems

Assessing Dialogue Systems with Distribution Distances [arXiv][code] We propose to measure the performance of a dialogue system by computing the distr

Civsim Introduction Civsim is a basic civilisation simulation and modelling system built in Python 3.8. It requires the following packages: perlin_noi

NVIDIA Merlin is an open source library providing end-to-end GPU-accelerated recommender systems, from feature engineering and preprocessing to training deep learning models and running inference in production.

The PyTorch-Kaldi Speech Recognition Toolkit PyTorch-Kaldi is an open-source repository for developing state-of-the-art DNN/HMM speech recognition sys

Texar-PyTorch is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar

Physics-Aware Training (PAT) is a method to train real physical systems with backpropagation. It was introduced in Wright, Logan G. & Onodera, Tatsuhiro et al. (2021)1 to train Physical Neural Networks (PNNs) - neural networks whose building blocks are physical systems.

This is a python implementation of the ASFLIP advection method . We would like to hear from you if you appreciate this work.

RecSim NG, a probabilistic platform for multi-agent recommender systems simulation. RecSimNG is a scalable, modular, differentiable simulator implemented in Edward2 and TensorFlow. It offers: a powerful, general probabilistic programming language for agent-behavior specification;

PyDy, short for Python Dynamics, is a tool kit written in the Python programming language that utilizes an array of scientific programs to enable the study of multibody dynamics. The goal is to have a modular framework and eventually a physics abstraction layer which utilizes a variety of backends that can provide the user with their desired workflow

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

Structural basis for solubility in protein expression systems Large-scale protein production for biotechnology and biopharmaceutical applications rely

collie_recs Collie is a library for preparing, training, and evaluating implicit deep learning hybrid recommender systems, named after the Border Coll

This repository contains code to train and test GNN models for recommendation, mainly using the Deep Graph Library (DGL).

PwnLnX An advanced multi-threaded, multi-client python reverse shell for hacking linux systems. There's still more work to do so feel free to help out

LiuAlgoTrader is a scalable, multi-process ML-ready framework for effective algorithmic trading. The framework simplify development, testing, deployment, analysis and training algo trading strategies. The framework automatically analyzes trading sessions, and the analysis may be used to train predictive models.

Gaphor is a UML and SysML modeling application written in Python. It is designed to be easy to use, while still being powerful. Gaphor implements a fully-compliant UML 2 data model, so it is much more than a picture drawing tool. You can use Gaphor to quickly visualize different aspects of a system as well as create complete, highly complex models.

The SLIDE package contains the source code for reproducing the main experiments in this paper. Dataset The Datasets can be downloaded in Amazon-

pyproj Python interface to PROJ (cartographic projections and coordinate transformations library). Documentation Stable: http://pyproj4.github.io/pypr

gradsim gradSim: Differentiable simulation for system identification and visuomotor control gradSim is a unified differentiable rendering and multiphy

PyTorch Implementation of Differentiable SDE Solvers This library provides stochastic differential equation (SDE) solvers with GPU support and efficie

Hivemind: decentralized deep learning in PyTorch Hivemind is a PyTorch library to train large neural networks across the Internet. Its intended usage

Backtesting.py Backtest trading strategies with Python. Project website Documentation the project if you use it. Installation $ pip install backtestin

pyproj Python interface to PROJ (cartographic projections and coordinate transformations library). Documentation Stable: http://pyproj4.github.io/pypr

SPLASH: Semantic Parsing with Language Assistance from Humans SPLASH is dataset for the task of semantic parse correction with natural language feedba

capbot-siic Repository to hold code for the cap-bot varient that is being presented at the SIIC Defence Hackathon 2021. Problem Inspiration A plethora

Passive TCP/IP Fingerprinting This is a passive TCP/IP fingerprinting tool. Run this on your server and find out what operating systems your clients a

[ICLR 2021] "UMEC: Unified Model and Embedding Compression for Efficient Recommendation Systems" by Jiayi Shen, Haotao Wang*, Shupeng Gui*, Jianchao Tan, Zhangyang Wang, and Ji Liu

Gaphor Gaphor is a UML and SysML modeling application written in Python. It is designed to be easy to use, while still being powerful. Gaphor implemen

Oncall See admin docs for information on how to run and manage Oncall. Development setup Prerequisites Debian/Ubuntu - sudo apt-get install libsasl2-d

Glances - An eye on your system Summary Glances is a cross-platform monitoring tool which aims to present a large amount of monitoring information thr

Crafter Open world survival environment for reinforcement learning. Highlights Crafter is a procedurally generated 2D world, where the agent finds foo

c is for Camera A 35mm camera, based on the Canonet G-III QL17 rangefinder, simulated in Python. The purpose of this project is to explore and underst

Applied Reinforcement Learning @ Facebook Overview ReAgent is an open source end-to-end platform for applied reinforcement learning (RL) developed and

eXtreme Gradient Boosting Community | Documentation | Resources | Contributors | Release Notes XGBoost is an optimized distributed gradient boosting l

Navier-Stokes-numerical-solution-using-Python- Python script for Linear, Non-Linear Convection, Burger’s & Poisson Equation in 1D & 2D, 1D D

Table of contents What is PEM? Overview Installation Usage Executable Library Telegram Bot Try OPEM in Your Browser! MATLAB Issues & Bug Reports Contr

ANUGA Contents ANUGA What is ANUGA? Installation Documentation and Help Mailing Lists Web sites Latest source code Bug reports Developer information L

Unknown-Horizons based on Fifengine is no longer in development. We are porting it to Godot Engine. Please dont report any new bugs. Only bugfixes wil

MazeRL is an application oriented Deep Reinforcement Learning (RL) framework, addressing real-world decision problems. Our vision is to cover the complete development life cycle of RL applications ranging from simulation engineering up to agent development, training and deployment.

Gaphor Gaphor is a UML and SysML modeling application written in Python. It is designed to be easy to use, while still being powerful. Gaphor implemen

Py4J Py4J enables Python programs running in a Python interpreter to dynamically access Java objects in a Java Virtual Machine. Methods are called as

Differentiable molecular simulation of proteins with a coarse-grained potential This repository contains the learned potential, simulation scripts and

KStrike Stand-alone parser for User Access Logging from Server 2012 and newer systems BriMor Labs KStrike This script will parse data from the User Ac

qecsim qecsim is a Python 3 package for simulating quantum error correction using stabilizer codes.

This repository contains a simulation-based inference benchmark framework, sbibm, which we describe in the associated manuscript "Benchmarking Simulation-based Inference".

CSE-Autoloss Designing proper loss functions for vision tasks has been a long-standing research direction to advance the capability of existing models

Texar is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar provides

DeepPavlov is an open-source conversational AI library built on TensorFlow, Keras and PyTorch. DeepPavlov is designed for development of production re

Persine, the Persona Engine Persine is an automated tool to study and reverse-engineer algorithmic recommendation systems. It has a simple interface a

Texar is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar provides

DeepPavlov is an open-source conversational AI library built on TensorFlow, Keras and PyTorch. DeepPavlov is designed for development of production re

eXtreme Gradient Boosting Community | Documentation | Resources | Contributors | Release Notes XGBoost is an optimized distributed gradient boosting l

Glances - An eye on your system Summary Glances is a cross-platform monitoring tool which aims to present a large amount of monitoring information thr

GoAccess What is it? GoAccess is an open source real-time web log analyzer and interactive viewer that runs in a terminal on *nix systems or through y

OpenVINO Inference API This is a repository for an object detection inference API using the OpenVINO. It's supported on both Windows and Linux Operati

Overview I'm building my network simulation environments with Vagrant using libvirt plugin on a Ubuntu 20.04 system... and I always hated how boring i

Overview Surprise is a Python scikit for building and analyzing recommender systems that deal with explicit rating data. Surprise was designed with th

DeepPavlov is an open-source conversational AI library built on TensorFlow, Keras and PyTorch. DeepPavlov is designed for development of production re

Cornac Cornac is a comparative framework for multimodal recommender systems. It focuses on making it convenient to work with models leveraging auxilia

Recommenders What's New (February 4, 2021) We have a new relase Recommenders 2021.2! It comes with lots of bug fixes, optimizations and 3 new algorith

eXtreme Gradient Boosting Community | Documentation | Resources | Contributors | Release Notes XGBoost is an optimized distributed gradient boosting l

The MicroPython project This is the MicroPython project, which aims to put an implementation of Python 3.x on microcontrollers and small embedded syst

Python Stream Processing Version: 1.10.4 Web: http://faust.readthedocs.io/ Download: http://pypi.org/project/faust Source: http://github.com/robinhood

Ansible Ansible is a radically simple IT automation system. It handles configuration management, application deployment, cloud provisioning, ad-hoc ta