Python Workflow-specification Resources

GeoParquet About This repository defines how to store geospatial vector data (point, lines, polygons) in Apache Parquet, a popular columnar storage fo

ZenBytes Join our Slack Community and become part of the ZenML family Give the main ZenML repo a GitHub star to show your love ZenBytes is a series of

A Human-in-the-Loop? workflow for creating HD images from text DALL·E Flow is an interactive workflow for generating high-definition images from text

Nanopore-Workflow Snakemake workflow to process and filter long read data from Oxford Nanopore Technologies. It is designed to compare whole human gen

Chatbot This project is about a chatbot on Telegram to study the cloud computing. You can refer to the project of chatbot-deploy which is conveinent f

Fast and customizable reconnaissance workflow tool based on simple YAML based DSL, with support of notifications and distributed workload of that work

NB Workflows Description If SQL is a lingua franca for querying data, Jupyter sh

pyrelational is a python active learning library developed by Relation Therapeutics for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.

Trio Assembly Snakemake Workflow Input HiFi reads for child in bam format Either

Soorgeon Join our community | Newsletter | Contact us | Blog | Website | YouTube Convert monolithic Jupyter notebooks into Ploomber pipelines. soorgeo

Using DVC with PyCaret & FastAPI (Demo) This repo contains all the resources for my demo explaining how to use DVC along with other interesting tools

Alfred-Restore-Iterm-Arrangement This alfred workflow will list avaliable iTerm2

Coin Ticker for Alfred Workflow An Alfred Workflow that provides current price and status about cryptocurrency from cryptocompare.com. Supports Alfred

Exercises and project documentation for the 3. Developing your First ML Workflow of the AWS Machine Learning Engineer Nanodegree Program

AWS Serverless Application Model (AWS SAM) The AWS Serverless Application Model (SAM) is an open-source framework for building serverless applications

tisane Tisane: Authoring Statistical Models via Formal Reasoning from Conceptual and Data Relationships TL;DR: Analysts can use Tisane to author gener

Plant extraction workflow Source code for the plant extraction workflow introduced in the paper "Agricultural Plant Cataloging and Establishment of a

Alfred 4 Workflow to search through your maintained/watched/starred GitHub repositories. Setup This workflow requires a number of Python modules. Thes

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your machine! Motivation Would

prefect-saturn prefect-saturn is a Python package that makes it easy to run Prefect Cloud flows on a Dask cluster with Saturn Cloud. For a detailed tu

Welcome to spline - the pipeline tool Important note: Since change in my job I didn't had the chance to continue on this project. My main new project

title emoji colorFrom colorTo sdk app_file pinned decontextualizer 📤 green gray streamlit main.py false Decontextualizer As a second step in improvin

Jug: A Task-Based Parallelization Framework Jug allows you to write code that is broken up into tasks and run different tasks on different processors.

Collection of useful command line utilities and snippets to help you organise your workspace and improve workflow.

VSCode-LaTeX-Inkscape A way to integrate LaTeX, VSCode, and Inkscape in macOS Abstract I use LaTeX heavily in past two years for both academic work an

YAWPS Yet Another Workflow Parser for SecurityHub "Screaming pepper" by Rum Bucolic Ape is licensed with CC BY-ND 2.0. To view a copy of this license,

signac-flow - manage workflows with signac The signac framework helps users manage and scale file-based workflows, facilitating data reuse, sharing, a

Snakemake workflow: name A Snakemake workflow for description Usage The usage of this workflow is described in the Snakemake Workflow Catalog. If

The OpenAPI Specification The OpenAPI Specification is a community-driven open specification within the OpenAPI Initiative, a Linux Foundation Collabo

Flasgger Easy Swagger UI for your Flask API Flasgger is a Flask extension to extract OpenAPI-Specification from all Flask views registered in your API

apispec A pluggable API specification generator. Currently supports the OpenAPI Specification (f.k.a. the Swagger specification). Features Supports th

Generate interactive API documentation from OpenAPI definitions This is the README for the 2.x version of Redoc (React-based). The README for the 1.x

OpenAPI Spec validator About OpenAPI Spec Validator is a Python library that validates OpenAPI Specs against the OpenAPI 2.0 (aka Swagger) and OpenAPI

Master (2.4.25-SNAPSHOT): 3.0.31-SNAPSHOT: Maven Central ⭐ ⭐ ⭐ If you would like to contribute, please refer to guidelines and a list of open tasks. ⭐

OpenAPI-to-GraphQL Translate APIs described by OpenAPI Specifications (OAS) or Swagger into GraphQL. Getting started OpenAPI-to-GraphQL can be used in

Cylc: a workflow engine for cycling systems. Repository master branch: core meta-scheduler component of cylc-8 (in development); Repository 7.8.x branch: full cylc-7 system.

AutoRest The AutoRest tool generates client libraries for accessing RESTful web services. Input to AutoRest is a spec that describes the REST API usin

Openapi-core is a Python library that adds client-side and server-side support for the OpenAPI Specification v3.

A framework for the elicitation, specification, formalization and understanding of requirements.

Flasgger Easy Swagger UI for your Flask API Flasgger is a Flask extension to extract OpenAPI-Specification from all Flask views registered in your API

Apache Airflow Apache Airflow (or simply Airflow) is a platform to programmatically author, schedule, and monitor workflows. When workflows are define

The Open-Source MLOps Orchestration Framework MLRun is an open-source MLOps framework that offers an integrative approach to managing your machine-lea

Flyte Flyte is a workflow automation platform for complex, mission-critical data, and ML processes at scale Home Page · Quick Start · Documentation ·

blender-bake-tool This is a fork of the BakeTool with some improvements that I did to have better workflow. 99.99% of work was done by BakeTool team.

pCopy This simple python script pcopy reads a list of file names and copies them to a separate folder. Pre-requisites Python 3 (ver. 3.6) How to use

PyPackage Cookiecutter This repository is a cookiecutter to quickly start a Python package. It contains a ton of very useful features 🐳 : Package man

TEMPLATES AND COMPONENTS IN ANY LANG! This is an Open Repository For Students to Contribute code in Hackoctoberfest in different Languages and Tech me

ff3 - Format Preserving Encryption in Python An implementation of the NIST approved FF3 and FF3-1 Format Preserving Encryption (FPE) algorithms in Pyt

Automatic regional-scale earthquake catalog building workflow: EQTransformer + Siamese EQTransforme

ClearML - Auto-Magical Suite of tools to streamline your ML workflow Experiment Manager, MLOps and Data-Management ClearML Formerly known as Allegro T

DALLE tools DALLE-tools is a github repository with useful tools to categorize, annotate or check the sanity of your datasets. Installation Just clone

"Dataflow variables are spectacularly expressive in concurrent programming" Henri E. Bal , Jennifer G. Steiner , Andrew S. Tanenbaum Quick overview Ne

PyDS CLI Helping you manage your data science projects sanely. Requirements Anaconda/Miniconda/Miniforge/Mambaforge (Mambaforge recommended!) git on y

HiFi DeepVariant + WhatsHap workflow Workflow steps align HiFi reads to reference with pbmm2 call small variants with DeepVariant, using two-pass meth

ClearML - Auto-Magical Suite of tools to streamline your ML workflow Experiment Manager, MLOps and Data-Management ClearML Formerly known as Allegro T

Hera is an Argo Workflows Python SDK. Hera aims to make workflow construction and submission easy and accessible to everyone! Hera abstracts away workflow setup details while still maintaining a consistent vocabulary with Argo Workflows.

Dagster An orchestration platform for the development, production, and observation of data assets. Dagster lets you define jobs in terms of the data f

AnimAssist Provides a quick and easy way to mod animations in FFXIV. You will need: Before anything, the VC++2012 32-bit Redist from here. Havok will

histogram specification using openCV in python . Have to input miu and sigma to draw gausssian distribution which will be used to map the input image . Example input can be miu = 128 sigma = 30

Obsei is a low code AI powered automation tool. It can be used in various business flows like social listening, AI based alerting, brand image analysis, comparative study and more .

py-wacz The py-wacz repository contains a Python module and command line utility for working with web archive data using the WACZ format specification

Payu Payu is a climate model workflow management tool for supercomputing environments. Payu is currently only configured for use on computing clusters

SaltConf21: Adding Workflow Approval to Salt Running To run the example, install Docker and docker-compose and run the following commands: docker-comp

redun yet another redundant workflow engine redun aims to be a more expressive and efficient workflow framework, built on top of the popular Python pr

single_snake_sequencing - sc/snRNAseq Snakemake Workflow A Snakemake workflow for standardised sc/snRNAseq analysis. Every single cell analysis is sli

Presentation Remote A remote made for making presentations easier by enabling all the members to have access to change the slide and control the flow

Deep-Education This repository is now available for public use for teaching end to end workflow of deep learning. This implies that learners/researche

Introduction Swagger UI allows anyone — be it your development team or your end consumers — to visualize and interact with the API’s resources without

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

This is a simple and flexible ML workflow engine. It helps to orchestrate events across a set of microservices and create executable flow to handle requests. Engine is designed to be configurable with any microservices. Enjoy!

Pulsemeeter A frontend to ease the use of pulseaudio's routing capabilities, mimicking voicemeeter's workflow Features Create virtual inputs and outpu

MLOps template with examples for Data pipelines, ML workflow management, API development and Monitoring.

Write maintainable, production-ready pipelines using Jupyter or your favorite text editor. Develop locally, deploy to the cloud. ☁️

Germline Mutation Calling This Snakemake workflow follows the GATK best-practice recommandations to call small germline variants. The pipeline require

A modern Python package manager with PEP 582 support.

drf-spectacular Sane and flexible OpenAPI 3.0 schema generation for Django REST framework. This project has 3 goals: Extract as much schema informatio

drf-yasg - Yet another Swagger generator Generate real Swagger/OpenAPI 2.0 specifications from a Django Rest Framework API. Compatible with Django Res

Python library for calling Cytoscape Automation via CyREST

LOC-FLOW is an “hands-free” earthquake location workflow to process continuous seismic records: from raw waveforms to well located earthquakes with magnitude calculations. The package assembles several popular routines for sequential earthquake location refinements, suitable for catalog building ranging from local to regional scales.

This package currently provides the opentypespec.tags module, which exports FEATURE_TAGS, SCRIPT_TAGS, LANGUAGE_TAGS and BASELINE_TAGS dictionaries, representing data from the Layout Tag Registry

A terminal UI dashboard to monitor requests for code review across Github and Gitlab repositories.

Home Install Documentation Slack Invite Cray Labs SmartSim SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and Ten

SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and TensorFlow, in High Performance Computing (HPC) simulations and workloads.

Lumen project provides a framework for visual analytics, which allows users to build data-driven dashboards from a simple yaml specification

DevOps-The-Hard-Way-AWS This tutorial contains a full, real-world solution for setting up an environment that is using DevOps technologies and practic

A lightweight (serverless) native python parallel processing framework based on simple decorators and call graphs, supporting both control flow and dataflow execution paradigms as well as de-centralized CPU & GPU scheduling.

drf-yasg - Yet another Swagger generator Generate real Swagger/OpenAPI 2.0 specifications from a Django Rest Framework API. Compatible with Django Res

Emily's Symbol Dictionary Design This dictionary was created with the following goals in mind: Have a consistent method to type (pretty much) every sy

savior是一个能够进行快速集成算法模块并支持高性能部署的轻量开发框架。能够帮助将团队进行快速想法验证（PoC），避免重复的去github上找模型然后复现模型；能够帮助团队将功能进行流程拆解，很方便的提高分布式执行效率；能够有效减少代码冗余，减少不必要负担。

Viewflow Viewflow is a framework built on the top of Airflow that enables data scientists to create materialized views. It allows data scientists to f

A lightweight, GPU accelerated, SQL engine built on the RAPIDS.ai ecosystem. Get Started on app.blazingsql.com Getting Started | Documentation | Examp

Continuous Reforestation Make tree planting a part of your daily workflow. 🌳 A GitHub Action for planting trees within your development workflow usin

PICCL: Philosophical Integrator of Computational and Corpus Libraries PICCL offers a workflow for corpus building and builds on a variety of tools. Th

CRAFT: Character-Region Awareness For Text detection Packaged, Pytorch-based, easy to use, cross-platform version of the CRAFT text detector | Paper |

StackStorm is a platform for integration and automation across services and tools, taking actions in response to events. Learn more at www.stackstorm.

Apache Airflow Apache Airflow (or simply Airflow) is a platform to programmatically author, schedule, and monitor workflows. When workflows are define

Pipenv: Python Development Workflow for Humans [ ~ Dependency Scanning by PyUp.io ~ ] Pipenv is a tool that aims to bring the best of all packaging wo

git plan A better workflow for git. Git plan inverts the git workflow so that you can write your commit message first, before you start writing code.

BatchFlow BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflo

Reproduce, Automate, Scale your data science. Welcome to Polyaxon, a platform for building, training, and monitoring large scale deep learning applica