Python Biomedical-applications Resources

Rendering of live Jupyter notebooks with interactive widgets. Introduction Voilà turns Jupyter notebooks into standalone web applications. Unlike the

Cookiecutter SAM template for Lambda functions in Rust This is a Cookiecutter template to create a serverless application based on the Serverless Appl

Introduction The field of connectomics aims to reconstruct the wiring diagram of the brain by mapping the neural connections at the level of individua

DBMS project- Hotel Franchise Data and application project By TEAM Kurukunda Bhargavi Pamulapati Pallavi Greeshma Amaraneni What is this project about

Automated Machine Learning Pipeline for tabular data. Designed for predictive maintenance applications, failure identification, failure prediction, condition monitoring, etc.

Improving Video Generation for Multi-functional Applications GitHub repository for "Improving Video Generation for Multi-functional Applications" Pape

gans-awesome-applications Curated list of awesome GAN applications and demonstrations. Note: General GAN papers targeting simple image generation such

A distributed, plug-n-play algorithm for multi-robot applications with a priori non-computable objective functions Kapoutsis, A.C., Chatzichristofis,

RobustBioNLP Improving the robustness and performance of biomedical NLP models through adversarial training In this repository you can find suppliment

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

Music Classification: Beyond Supervised Learning, Towards Real-world Applications

Flexible-CLmser: Regularized Feedback Connections for Biomedical Image Segmentation The skip connections in U-Net pass features from the levels of enc

Multi-objective constrained optimization for energy applications via tree ensembles

SimplePasswordManager A simple way to store your passwords without requiring third party applications Simple To Use. Store Your Passwords For Each Web

A high-level framework for building GitHub applications in Python. Core Features Async Proper ratelimit handling Handles interactions for you (

English | 简体中文 PaddleGAN PaddleGAN provides developers with high-performance implementation of classic and SOTA Generative Adversarial Networks, and s

Python Refactoring Refactoring Python Applications for Simplicity. You can open and read project files or use this summary 👇 Concatenate String my_st

Data Intelligence Applications - Online Product Advertising and Pricing with Context Generation Overview Consider the scenario in which advertisement

Documentation redrawing Python package provinding tools for artistic interactive applications using AI Created by ReDrawing Campinas team for the Open

waltlabtools A collection of tools for biomedical research assay analysis in Python. Key Features Analysis for assays such as digital ELISA, including

AutoTabular AutoTabular automates machine learning tasks enabling you to easily achieve strong predictive performance in your applications. With just

🚀 Welcome to AWS Copilot Workshop In this workshop, you'll learn how to build, release and operate your containerised applications to Amazon ECS and

Clint: Python Command-line Interface Tools Clint is a module filled with a set of awesome tools for developing commandline applications. C ommand L in

Python Prompt Toolkit prompt_toolkit is a library for building powerful interactive command line applications in Python. Read the documentation on rea

Quo is a Python based toolkit for writing Command-Line Interface(CLI) applications. Quo is making headway towards composing speedy and orderly CLI applications while forestalling any disappointments brought about by the failure to execute a CLI API. Simple to code, easy to learn, and does not come with needless baggage.

BMVC 2021 BI-GConv: Boundary-Aware Input-Dependent Graph Convolution for Biomedical Image Segmentation Necassary Dependencies: PyTorch 1.2.0 Python 3.

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

Install and Run Python Applications in Isolated Environments

SSKT(Accepted WACV2022) Concept map Dataset Image dataset CIFAR10 (torchvision) CIFAR100 (torchvision) STL10 (torchvision) Pascal VOC (torchvision) Im

GBW This repo implements several applications of the proposed generalized Bures-Wasserstein (GBW) geometry on symmetric positive definite matrices. Ap

Vector AI is a framework designed to make the process of building production grade vector based applications as quickly and easily as possible. Create

简体中文 | English News [2021-10-12] PaddleNLP 2.1版本已发布！新增开箱即用的NLP任务能力、Prompt Tuning应用示例与生成任务的高性能推理！ 🎉 更多详细升级信息请查看Release Note。 [2021-08-22]《千言：面向事实一致性的生

Kimimaro: Skeletonize Densely Labeled Images # Produce SWC files from volumetric images. kimimaro forge labels.npy --progress # writes to ./kimimaro_o

Ape Framework Ape is a framework for Web3 Python applications and smart contracts, with advanced functionality for testing, deployment, and on-chain i

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

SmartSim Example Zoo This repository contains CrayLabs and user contibuted examples of using SmartSim for various simulation and machine learning appl

A repository of links with advice related to grad school applications, research, phd etc

Passhunt is a simple tool for searching of default credentials for network devices, web applications and more. Search through 523 vendors and their 2084 default passwords.

guapow is an on-demand and auto performance optimizer for Linux applications. This project's name is an abbreviation for Guarana powder (Guaraná is a fruit from the Amazon rainforest with a highly caffeinated seed).

Zappa makes it super easy to build and deploy server-less, event-driven Python applications (including, but not limited to, WSGI web apps) on AWS Lambda + API Gateway. Think of it as "serverless" web hosting for your Python apps. That means infinite scaling, zero downtime, zero maintenance - and at a fraction of the cost of your current deployments!

MEDS: Enhancing Memory Error Detection for Large-Scale Applications Prerequisites cmake and clang Build MEDS supporting compiler $ make Build Using Do

A library to create multi-page Streamlit applications with ease.

AutoTabular automates machine learning tasks enabling you to easily achieve strong predictive performance in your applications. With just a few lines of code, you can train and deploy high-accuracy machine learning and deep learning models tabular data.

ml-in-cosmology This github attempts to maintain a comprehensive list of published machine learning applications to cosmology, organized by subject ma

Machine learning that just works, for effortless production applications

Chemistry in python Resources Used The following items are not made by me! Click the words to go to the original source Periodic Tab Json - Used in -

Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications

BriVL for Building Applications This repo is used for illustrating how to build applications by using BriVL model. This repo is re-implemented from fo

BioLAMA BioLAMA is biomedical factual knowledge triples for probing biomedical LMs. The triples are collected and pre-processed from three sources: CT

A ready-to-use curated list of Spectral Indices for Remote Sensing applications. GitHub: https://github.com/davemlz/awesome-ee-spectral-indices Docume

Django Hackathon Starter A boilerplate application for Django web applications. If you've attented hackathons, you already know how much time can be w

Welcome to django-allauth! Integrated set of Django applications addressing authentication, registration, account management as well as 3rd party (soc

Recommended AWS CDK project structure for Python applications The project implements a user management backend component that uses Amazon API Gateway,

Hydralit The Hydralit package is a wrapping and template project to combine multiple independant (or somewhat dependant) Streamlit applications into a

MVGCN MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks. Developer: Fu Hait

Turtle 🐢 The only purpose of a byte-sized application is to help you create .desktop entry files for downloaded applications. As of usual with elemen

txtai executes machine-learning workflows to transform data and build AI-powered semantic search applications.

BASNet Boundary-Aware Segmentation Network for Mobile and Web Applications This repository contain implementation of BASNet in tensorflow/keras. comme

Deploy WordPress to DigitalOcean with Sail Sail is a free CLI tool to deploy, manage and scale WordPress applications in the DigitalOcean cloud. Conte

pytest-django allows you to test your Django project/applications with the pytest testing tool.

FreezeUI is a python package use to create cx_Freeze setup files and run them to create applications and msi from python scripts (converts .py to .exe or .msi .

praudio provides objects and a script for performing complex preprocessing operations on entire audio datasets with one command.

Docker-Vulnerability-Check Docker is an open platform for developing, shipping, and running applications OS-level virtualization to deliver software i

apkizer apkizer collects all available versions of an Android application from apkpure.com Purpose Sometimes mobile applications can be useful to dig

Nasdaq Cloud Data Service (NCDS) Nasdaq Cloud Data Service (NCDS) provides a modern and efficient method of delivery for realtime exchange data and ot

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data arXiv This is the code base for weakly supervised NER. We provide a

A simple yet powerful TUI framework for your Python (3.7+) applications

News The code of MCTrans has been released. if you are interested in contributing to the standardization of the medical image analysis community, plea

-Nyokong. Drug design and development team HackBio internship is a virtual bioinformatics program that introduces students and professional to advance

OpenCDA OpenCDA is a SIMULATION tool integrated with a prototype cooperative driving automation (CDA; see SAE J3216) pipeline as well as regular autom

Easily turn single threaded command line applications into a fast, multi-threaded application with CIDR and glob support.

DeLORA: Self-supervised Deep LiDAR Odometry for Robotic Applications Overview Paper: link Video: link ICRA Presentation: link This is the correspondin

Adaptive Segmentation Mask Attack This repository contains the implementation of the Adaptive Segmentation Mask Attack (ASMA), a targeted adversarial

HyperPose is a library for building high-performance custom pose estimation applications.

U Net Lowered with Keras Complete U-net Implementation with keras Original Paper Link : https://arxiv.org/abs/1505.04597 Special Implementations : The

Among AIs is a PC Game we developed as part of the Smart Applications course @ Department of Computer Science of University of Pisa, under t

Check Your Head A quick and easy way to check a web applications response headers!

This is a multi-app executor that it used when we have some different task in a our applications and want to run them at the same time. It uses SQLAlchemy for ORM and Alembic for database migrations.

A lightweight Python framework for building and Integrating Web Applications. Sierra is a Python3 library for building and integrating web applications with HTML and CSS using simple enough syntax. You can develop your web applications with Python, taking advantage of its functionalities and integrating them to the fullest.

Role Based Access Control for Slack-Bolt Apps Role Based Access Control (RBAC) is a term applied to limiting the authorization for a specific operatio

LMs for biomedical KG completion This repository contains code to run the experiments described in: Scientific Language Models for Biomedical Knowledg

A JupyterLab extension that allows opening files and directories with external desktop applications.

English | 中文说明 CBLUE AI (Artificial Intelligence) is playing an indispensabe role in the biomedical field, helping improve medical technology. For fur

Automatic Weapon Detection Deployment of a hybrid model for automatic weapon detection/ anomaly detection for surveillance applications. Loved the pro

Orthogonalizing Convolutional Layers with the Cayley Transform This repository contains implementations and source code to reproduce experiments for t

SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization This is the code for our paper ``SumGNN: Multi-typed Drug

ModernGL is a python wrapper over OpenGL 3.3+ core that simplifies the creation of simple graphics applications like scientific simulations, games or user interface

Foreman Manage Procfile-based applications Installation $ gem install foreman Ruby users should take care not to install foreman in their project's G

An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.

Flask-SocketIO Socket.IO integration for Flask applications. Installation You can install this package as usual with pip: pip install flask-socketio

FastAPI-Wrapper CLI & APIness Streamlit App Arvindra Sehmi, Oxford Economics Ltd. | Website | LinkedIn (Updated: 21 April, 2021) fastapi-wrapper is mo

MultiResUNet Rethinking the U-Net architecture for multimodal biomedical image segmentation This repository contains the original implementation of "M

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

Cornell Biomedical Knowledge Hub (CBKH) CBKG integrates data from 18 publicly available biomedical databases. The current version of CBKG contains a t

Jupyter Docker Stacks are a set of ready-to-run Docker images containing Jupyter applications and interactive computing tools.

NVIDIA DALI The NVIDIA Data Loading Library (DALI) is a library for data loading and pre-processing to accelerate deep learning applications. It provi

MPI for Python Overview Welcome to MPI for Python. This package provides Python bindings for the Message Passing Interface (MPI) standard. It is imple

Ray provides a simple, universal API for building distributed applications. Ray is packaged with the following libraries for accelerating machine lear

OCR4all As suggested by the name one of the main goals of OCR4all is to allow basically any given user to independently perform OCR on a wide variety