Python Brain-atlas Resources

An open software package to develop BCI based brain and cognitive computing technology for recognizing user's intention using deep learning

Brain-Tumor-Detection Building a detection model using a convolutional neural network in Tensorflow & Keras. Used brain MRI images. InceptionResNetV2

The easiest way to the neuroscience world with the shield for RaspberryPi - PIEEG (website). Open-source. Crowdsupply This project is the result of se

Multi-atlas segmentation (MAS) is a promising framework for medical image segmentation. Generally, MAS methods register multiple atlases, i.e., medical images with corresponding labels, to a target image;

PyZebrascope - an open-source Python platform for brain-wide neural activity imaging in behaving zebrafish

Recovering-Brain-Structure-Network-Using-Functional-Connectivity Framework: Papers: This repository provides a PyTorch implementation of the models ad

Detect and Classify Brain Tumor using CNN. A system performing detection and classification by using Deep Learning Algorithms using Convolution-Neural Network (CNN).

Brain Weight in Humans Variations of head sizes and brain weights in humans Kaggle dataset obtained from this link by Anubhab Swain. Image obtained fr

Organic Alkalinity Sausage Machine A Python toolbox to churn out organic alkalinity calculations with minimal brain engagement. Getting started To mak

This repository contains the code for TABS, a 3D CNN-Transformer hybrid automated brain tissue segmentation algorithm using T1w structural MRI scans. TABS relies on a Res-Unet backbone, with a Vision Transformer embedded between the encoder and decoder layers.

Movies_api A CRUD and REST api with mongodb atlas. Setup First import all the python dependencies in your virtual environment or globally by the follo

Deep Learning on SDF for Classifying Brain Biomarkers To reproduce the results f

Brain-Tumor-Detection A convolutional neural network model built with Tensorflow & Keras to detect brain tumor and its different variants. Data of the

Brain-Tumor-Classification-with-MRI VGG16 model-based classification project about brain tumor detection. First, you can check what people are doing o

BRATS 2021 Solution For Segmentation Task This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmenta

maweight A Python package for multi-atlas based weight estimation for CT images, including segmentation by registration, feature extraction and model

Google Brain - Ventilator Pressure Prediction https://www.kaggle.com/c/ventilator-pressure-prediction The ventilator data used in this competition was

BCI-ToolBox 1. Introduction BCI-ToolBox is deep learning pipeline for motor-imagery classification. This repo contains five models: ShallowConvNet, De

Brain-Inspired Replay A PyTorch implementation of the continual learning experiments with deep neural networks described in the following paper: Brain

BraTS(Brain Tumour Segmentation) using V-Net This project is an approach to dete

tedana: TE Dependent ANAlysis TE-dependent analysis (tedana) is a Python library for denoising multi-echo functional magnetic resonance imaging (fMRI)

Instagram Bot 🤖 July 14, 2021 Overview 👍 A multifunctionality automated instagram bot that can mass text users, receive and read a message and store

Allen Institute Visual Behavior Analysis package This repository contains code for analyzing behavioral data from the Allen Brain Observatory: Visual

foundations-auth-proxy Setup By default the server runs on http://0.0.0.0:5558. This can be changed via the arguments. Arguments: '-H' or '--host': ho

Winning submission to the 2021 Brain Tumor Segmentation Challenge This repo contains the codes and pretrained weights for the winning submission to th

Winning submission to the 2021 Brain Tumor Segmentation Challenge This repo contains the codes and pretrained weights for the winning submission to th

Graph WaveNet for brain network analysis This is the implementation of the Graph WaveNet model used in our manuscript: S. Wein , A. Schüller, A. M. To

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

WaveGrad Implementation (PyTorch) of Google Brain's high-fidelity WaveGrad vocoder (paper). First implementation on GitHub with high-quality generatio

Multi-template MRI mouse brain atlas (both in vivo and ex vivo) Mouse Brain MRI atlas (both in-vivo and ex-vivo) (repository relocated from the origin

Can fMRI reveal the representation of syntactic structure in the brain? The code base for our paper on understanding syntactic representations in the

Deep Neural Mouse Brain Modeling This is the repository for the ongoing deep neural mouse modeling project, an attempt to characterize the representat

Python asymptotic Partial Directed Coherence and Directed Coherence estimation package for brain connectivity analysis. Free software: MIT license Doc

pyRiemann pyRiemann is a python package for covariance matrices manipulation and classification through Riemannian geometry. The primary target is cla

py_neuromodulation Click this button to run the "Tutorial ML with py_neuro" notebooks: The py_neuromodulation toolbox allows for real time capable pro

CaloGAN Simulating 3D High Energy Particle Showers in Multi-Layer Electromagnetic Calorimeters with Generative Adversarial Networks. This repository c

JBHI-Pytorch This repository contains a reference implementation of the algorithms described in our paper "Self-supervised Multi-modal Hybrid Fusion N

Brain-Image-Segmentation Segmentation of brain tissues in MRI image has a number of applications in diagnosis, surgical planning, and treatment of bra

A Python library for working with the RIPE Atlas anchoring mesh. fetchmesh is a tool to simplify working with Atlas anchoring mesh measurements. It ca

VoxHRNet This is the official implementation of the following paper: Whole Brain Segmentation with Full Volume Neural Network Yeshu Li, Jonathan Cui,

Evaluating deep transfer learning for whole-brain cognitive decoding This README file contains the following sections: Project description Repository

Structural Constraints on Information Content in Human Brain States Code accompanying the paper "The information content of brain states is explained

Reconstruct handwritten characters from brains using GANs Example code for the paper "Generative adversarial networks for reconstructing natural image

Blue Brain Search Source Code DOI Data & Models DOI Documentation Latest Release Python Versions License Build Status Static Typing Code Style Securit

starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics

DBSegment This tool generates 30 deep brain structures segmentation, as well as a brain mask from T1-Weighted MRI. The whole procedure should take ~1

ToFFi Toolbox This repository contains "before peer review" version of the software related to the preprint of the publication ToFFi - Toolbox for Fre

A Brain Tumor Detection and Classification Model built using RESNET50 architecture. The model is also deployed as a web application using Flask framework.

Unofficial PyTorch implementation of SimCLR by Google Brain

Code for Simulations in the Publication Can the brain use waves to solve planning problems? Installing Required Python Packages Please use Python vers

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

Brain Tokyo Workshop 🧠 🗼 This repo contains research materials released by members of the Google Brain team in Tokyo. Past Projects Weight Agnostic

Efficient Neural Architecture Search (ENAS) in PyTorch PyTorch implementation of Efficient Neural Architecture Search via Parameters Sharing. ENAS red

U-Net for brain segmentation U-Net implementation in PyTorch for FLAIR abnormality segmentation in brain MRI based on a deep learning segmentation alg

Brain Augmented Reality (AR) A neuroanatomy-based augmented reality experience powered by computer vision that features 3D visuals of the Atlas Brain

WaveGrad2 - PyTorch Implementation PyTorch Implementation of Google Brain's WaveGrad 2: Iterative Refinement for Text-to-Speech Synthesis. Status (202

kaggle-hpa-2021-7th-place-solution Code for 7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle. A description of the met

High-Performance Brain-to-Text Communication via Handwriting Overview This repo is associated with this manuscript, preprint and dataset. The code can

Code from the paper "High-Performance Brain-to-Text Communication via Handwriting"

TransBTS: Multimodal Brain Tumor Segmentation Using Transformer This repo is the official implementation for TransBTS: Multimodal Brain Tumor Segmenta

nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc