Python Functional-mri Resources

Fixing Malfunctional Objects With Learned Physical Simulation and Functional Prediction Figure 1. Teaser. Introduction This paper studies the problem

Growing 3D Artefacts and Functional Machines with Neural Cellular Automata Video of more results: https://www.youtube.com/watch?v=-EzztzKoPeo Requirem

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Functional-Calculator A simple but fully functional calculator that will take multiple operations. Usage Run the following command through terminal: p

Element selection for functional materials discovery by integrated machine learning of atomic contributions to properties 8.11.2021 Andrij Vasylenko I

At the moment, this repo is in an early state and serves as a learning tool for me. So it contains a a lot of quirks and code which can be done much better by cocotb-professionals.

Recovering-Brain-Structure-Network-Using-Functional-Connectivity Framework: Papers: This repository provides a PyTorch implementation of the models ad

funchacks 👋 Introduction Funchacks is a fun module that provides a small packag

O365_email A functional demo of the O365 Module to send an email on an authenticated, tokenized account. Prep Create an app in Azure Developer's porta

This repository contains the code for TABS, a 3D CNN-Transformer hybrid automated brain tissue segmentation algorithm using T1w structural MRI scans. TABS relies on a Res-Unet backbone, with a Vision Transformer embedded between the encoder and decoder layers.

Pyramid Transformer Net (PTNet) Project | Paper Pytorch implementation of PTNet for high-resolution and longitudinal infant MRI synthesis. PTNet: A Hi

Official TensorFlow implementation of the unsupervised reconstruction model using zero-Shot Learned Adversarial TransformERs (SLATER). (https://arxiv.

T2Net Task Transformer Network for Joint MRI Reconstruction and Super-Resolution (MICCAI 2021) [Paper][Code] Dependencies numpy==1.18.5 scikit_image==

Synthetic data need to preserve the statistical properties of real data in terms of their individual behavior and (inter-)dependences. Copula and functional Principle Component Analysis (fPCA) are statistical models that allow these properties to be simulated (Joe 2014). As such, copula generated data have shown potential to improve the generalization of machine learning (ML) emulators (Meyer et al. 2021) or anonymize real-data datasets (Patki et al. 2016).

py-maxwell-fdfd Solving Maxwell's equations via A python implementation of the 3D curl-curl E-field equations. This code contains additional work to e

Density Function Theory Program - kspy-tddft(tda) This is an implementation of Time-Dependent Density Functional Theory(TDDFT) using the Tamm-Dancoff

DPFM Code for "DPFM: Deep Partial Functional Maps" - 3DV 2021 (Oral) Installation This implementation runs on python = 3.7, use pip to install depend

Brain-Tumor-Classification-with-MRI VGG16 model-based classification project about brain tumor detection. First, you can check what people are doing o

SwinMR This is the official implementation of our proposed SwinMR: Swin Transformer for Fast MRI Please cite: @article{huang2022swin, title={Swi

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

Transfer Learning for MRI Images Classification This repository introduces a short project made during my stay at Neuromatch Summer School 2021. This

dffm The goal of dffm is to provide functionality to apply the methods developed in the paper “Dynamic Factor Model for Functional Time Series: Identi

BlackJack Welcome to BlackJack! This game is fully functional, with a casino sound package integrated using Pygame, dynamic game logic developed using

Ergonomica WARNING: master on this repository is not the same as a stable release! Currently, this software is purely experimental, as I am cleaning i

Futured provides a consistent interface for concurrent functional programming in Python. It wraps any callable to return a concurrent.futures.Future,

tedana: TE Dependent ANAlysis TE-dependent analysis (tedana) is a Python library for denoising multi-echo functional magnetic resonance imaging (fMRI)

This is a Python 3.10 port of mock, a library for manipulating human-readable message strings.

Package Continuous Integration Documentation About AbiPy is a python library to analyze the results produced by Abinit, an open-source program for the

A Python library for design by contract (DbC) and checking values, exceptions, and side-effects. In a nutshell, deal empowers you to write bug-free co

mrsd: a toolkit to generate MR sequence diagrams mrsd is a Python toolkit to generate MR sequence diagrams, as shown below for the basic FLASH sequenc

Python Testing Crawler 🐍 🩺 🕷️ A crawler for automated functional testing of a web application Crawling a server-side-rendered web application is a

Python-based-AI-Assistant I have used python functional programming to make this Ai assistant. Inspiration of project : we have seen in our daily life

pyfuncol pyfuncol Installation Usage API Documentation Compatibility Contributing License A Python functional collections library. It extends collecti

PyFunctional Features PyFunctional makes creating data pipelines easy by using chained functional operators. Here are a few examples of what it can do

Pipeline abstractions for deep learning. Full documentation here: https://lf1-io.github.io/padl/ PADL: is a pipeline builder for PyTorch. may be used

timemachines Autonomous, univariate, k-step ahead time-series forecasting functions assigned Elo ratings You can: Use some of the functionality of a s

Pyrsistent Pyrsistent is a number of persistent collections (by some referred to as functional data structures). Persistent in the sense that they are

Welcome to fastcore Python goodies to make your coding faster, easier, and more maintainable Python is a powerful, dynamic language. Rather than bake

A deep learning model for data-driven discovery of functional connectivity https://doi.org/10.3390/a14030075 Usman Mahmood, Zengin Fu, Vince D. Calhou

Disimpy Disimpy is a Python package for generating simulated diffusion-weighted MR signals that can be useful in the development and validation of dat

DAGAN This is the official implementation code for DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruct

Repositorio,com pequenos aplicativos uteis e funcionais A ideia e ir deselvolvendo pequenos aplicativos funcionais e adicionar a este repositorio List

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

Multi-template MRI mouse brain atlas (both in vivo and ex vivo) Mouse Brain MRI atlas (both in-vivo and ex-vivo) (repository relocated from the origin

KernelFunctionalOptimisation Code base for NeurIPS 2021 publication titled Kernel Functional Optimisation (KFO) We have conducted all our experiments

Reinforcement Learning with Learned Fourier Features State-space Soft Actor-Critic Experiments Move to the state-SAC-LFF repository. cd state-SAC-LFF

Removing Inter-Experimental Variability from Functional Data in Systems Neuroscience This repository is the official implementation of [https://www.bi

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

Fpylib This is a library to do functional programming in Python. Index Fpylib Index Features Intelligents Ranges with irange Lazyness to functions Com

Improving Video Generation for Multi-functional Applications GitHub repository for "Improving Video Generation for Multi-functional Applications" Pape

deepMRI: Deep learning methods for MRI Authors: Yang Gao, Hongfu Sun This repo is devloped based on Pytorch (1.8 or later) and matlab (R2019a or later

Lambda Exploring basic lambda calculus in Python. In this repo I have used the lambda function built into python to get a more intiutive feel of lambd

Pipetools Complete documentation pipetools enables function composition similar to using Unix pipes. It allows forward-composition and piping of arbit

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

Functional Programming Language A compiler for my small functional language. Written in python with SLY lexer/parser generator library. Requirements p

PipeChain Motivation PipeChain is a utility library for creating functional pipelines. Let's start with a motivating example. We have a list of Austra

WithPartial Introduction WithPartial is a simple utility for functional piping in Python. The package exposes a context manager (used with with) calle

Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder structure with deep supervision (—𝘜𝘕𝘦𝘵++). Built in TensorFlow 2.5. Configured for voxel-level clinically significant prostate cancer detection in multi-channel 3D bpMRI scans.

A utility for functional piping in Python that allows you to access any function in any scope as a partial.

DQC: Differentiable Quantum Chemistry Differentiable quantum chemistry package. Currently only support differentiable density functional theory (DFT)

functional-zoo Model definitions and pretrained weights for PyTorch and Tensorflow PyTorch, unlike lua torch, has autograd in it's core, so using modu

chitra What is chitra? chitra (चित्र) is a multi-functional library for full-stack Deep Learning. It simplifies Model Building, API development, and M

Statusbar-TenorGIF App for Linux A quick and dirty QT Statusbar implementation for grabbing GIFs from Tenor, since there is no offical one and I didnt

DBSegment This tool generates 30 deep brain structures segmentation, as well as a brain mask from T1-Weighted MRI. The whole procedure should take ~1

QSIprep: Preprocessing and analysis of q-space images Full documentation at https://qsiprep.readthedocs.io About qsiprep configures pipelines for proc

Documentation The documentation is available on populse_mia's website here Installation From PyPI, for users By cloning the package, for developers Fr

ecommerce_website Fully functional ecommerce website with user and guest checkout capabilities and Paypal payment integration. pip install django pyth

kakuro.py Very basic but functional Kakuro solver written in Python. It uses a reduction to exact set cover and Ali Assaf's elegant implementation of

BayesFGM Paper: Jiajing Niu, Andrew Brown. Bayesian regularization for functional graphical models. Requirements R version 3.6.3 and up Python 3.6 and

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing for applications and libraries. An example o

bartpy Python bindings for BART. Overview This repo contains code to generate an updated Python wrapper for the Berkeley Advance Reconstruction Toolbo

Functional Data Analysis Python package

In this repo, you can find the data from our ACL 2021 paper "HateCheck: Functional Tests for Hate Speech Detection Models". "test_suite_cases.csv" con

U-Net for brain segmentation U-Net implementation in PyTorch for FLAIR abnormality segmentation in brain MRI based on a deep learning segmentation alg

DeepFRI Deep functional residue identification Citing @article {Gligorijevic2019, author = {Gligorijevic, Vladimir and Renfrew, P. Douglas and Koscio

🏷️FUUID stands for Functional Universally Unique IDentifier. FUUIDs are compatible with regular UUIDs but are naturally ordered by generation time, collision-free and support succinct representations such as raw binary and base58-encoded strings.

fastMRI is a collaborative research project from Facebook AI Research (FAIR) and NYU Langone Health to investigate the use of AI to make MRI scans faster. NYU Langone Health has released fully anonymized knee and brain MRI datasets that can be downloaded from the fastMRI dataset page. Publications associated with the fastMRI project can be found at the end of this README.

LocalStack - A fully functional local AWS cloud stack LocalStack provides an easy-to-use test/mocking framework for developing Cloud applications. Cur

Pampy: Pattern Matching for Python Pampy is pretty small (150 lines), reasonably fast, and often makes your code more readable and hence easier to rea

Make your functions return something meaningful, typed, and safe! Features Brings functional programming to Python land Provides a bunch of primitives

Funcy A collection of fancy functional tools focused on practicality. Inspired by clojure, underscore and my own abstractions. Keep reading to get an

Toolz A set of utility functions for iterators, functions, and dictionaries. See the PyToolz documentation at https://toolz.readthedocs.io LICENSE New

Funsor Funsor is a tensor-like library for functions and distributions. See Functional tensors for probabilistic programming for a system description.

kingdom-python-server 🐍 Modular, transparent, batteries (half) included, lightning fast web server. Features a functional, isolated business layer wi

tf-fsvd TensorFlow Implementation of Functional Singular Value Decomposition for paper Fast Graph Learning with Unique Optimal Solutions Cite If you f

meza: A Python toolkit for processing tabular data Index Introduction | Requirements | Motivation | Hello World | Usage | Interoperability | Installat

pandas-ply: functional data manipulation for pandas pandas-ply is a thin layer which makes it easier to manipulate data with pandas. In particular, it

Pampy: Pattern Matching for Python Pampy is pretty small (150 lines), reasonably fast, and often makes your code more readable and hence easier to rea

Make your functions return something meaningful, typed, and safe! Features Brings functional programming to Python land Provides a bunch of primitives

Funcy A collection of fancy functional tools focused on practicality. Inspired by clojure, underscore and my own abstractions. Keep reading to get an

Toolz A set of utility functions for iterators, functions, and dictionaries. See the PyToolz documentation at https://toolz.readthedocs.io LICENSE New

Awesome Pattern Matching (apm) for Python pip install awesome-pattern-matching Simple Powerful Extensible Composable Functional Python 3.7+, PyPy3.7+

fklearn: Functional Machine Learning fklearn uses functional programming principles to make it easier to solve real problems with Machine Learning. Th

Thinc: A refreshing functional take on deep learning, compatible with your favorite libraries From the makers of spaCy, Prodigy and FastAPI Thinc is a

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing for applications and libraries. An example o

PyPika - Python Query Builder Abstract What is PyPika? PyPika is a Python API for building SQL queries. The motivation behind PyPika is to provide a s

Build fast, reliable, end-to-end tests. SeleniumBase is a Python framework for web automation, end-to-end testing, and more. Tests are run with "pytes

funct.Array Array is a functional mutable sequence inheriting from Python's built-in list. Array provides 100+ higher-order methods and more functiona

Documentation: https://raamana.github.io/neuropredict/ News As of v0.6, neuropredict now supports regression applications i.e. predicting continuous t