Python Diffusion-mri Resources

Bilateral Denoising Diffusion Models (BDDMs) This is the official PyTorch implementation of the following paper: BDDM: BILATERAL DENOISING DIFFUSION M

Planning with Diffusion Training and visualizing of diffusion models from Planning with Diffusion for Flexible Behavior Synthesis. Guided sampling cod

GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation [OpenReview] [arXiv] [Code] The official implementation of GeoDiff: A Geome

#360Diffusion automatically upscales your CLIP Guided Diffusion outputs using Real-ESRGAN. Latest Update: Alpha 1.61 [Main Branch] - 01/11/22 Layout a

Retrieval-Augmented Denoising Diffusion Probabilistic Models (wip) Implementation of Retrieval-Augmented Denoising Diffusion Probabilistic Models in P

Patch-Diffusion This is an official PyTorch implementation of "Patch Diffusion: A General Module for Face Manipulation Detection" in AAAI2022. Require

DiffGAN-TTS - PyTorch Implementation PyTorch implementation of DiffGAN-TTS: High

Pseudo Numerical Methods for Diffusion Models on Manifolds (PNDM) This repo is the official PyTorch implementation for the paper Pseudo Numerical Meth

MarkovGNN This is the official PyTorch-Geometric implementation of MarkovGNN paper under the title "MarkovGNN: Graph Neural Networks on Markov Diffusi

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

NTIRE 2022 - Image Inpainting Challenge Important dates 2022.02.01: Release of train data (input and output images) and validation data (only input) 2

Variational DiffWave Training DiffWave using variational method from Variational Diffusion Models. Quick Start python train_distributed.py discrete_10

This repository contains the code for TABS, a 3D CNN-Transformer hybrid automated brain tissue segmentation algorithm using T1w structural MRI scans. TABS relies on a Res-Unet backbone, with a Vision Transformer embedded between the encoder and decoder layers.

GNDC For submission to IEEE TKDE. Overview Here we provide the implementation of GND-Nets (Graph Neural Diffusion Networks) in TensorFlow. The reposit

Pyramid Transformer Net (PTNet) Project | Paper Pytorch implementation of PTNet for high-resolution and longitudinal infant MRI synthesis. PTNet: A Hi

Official TensorFlow implementation of the unsupervised reconstruction model using zero-Shot Learned Adversarial TransformERs (SLATER). (https://arxiv.

T2Net Task Transformer Network for Joint MRI Reconstruction and Super-Resolution (MICCAI 2021) [Paper][Code] Dependencies numpy==1.18.5 scikit_image==

PyTorch Implementation of "Progressive Distillation for Fast Sampling of Diffusion Models(v-diffusion)" Unofficial PyTorch Implementation of Progressi

Brain-Tumor-Classification-with-MRI VGG16 model-based classification project about brain tumor detection. First, you can check what people are doing o

SwinMR This is the official implementation of our proposed SwinMR: Swin Transformer for Fast MRI Please cite: @article{huang2022swin, title={Swi

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

UNet-SIDE The undersampled DWI image using Slice-Interleaved Diffusion Encoding (SIDE) method can be reconstructed by the UNet network. For Super Reso

Asynchronous-Anisotropic-Diffusion-Algorithm This is a demo for AAD algorithm. The subroutine of the anisotropic diffusion algorithm is modified from

Transfer Learning for MRI Images Classification This repository introduces a short project made during my stay at Neuromatch Summer School 2021. This

Vector Quantized Diffusion Model for Text-to-Image Synthesis Due to company policy, I have to set microsoft/VQ-Diffusion to private for now, so I prov

Shape Generation and Completion Through Point-Voxel Diffusion Project | Paper Implementation of Shape Generation and Completion Through Point-Voxel Di

A minimal yet resourceful implementation of diffusion models (along with pretrained models + synthetic images for nine datasets)

CSDI This is the github repository for the NeurIPS 2021 paper "CSDI: Conditional Score-based Diffusion Models for Probabilistic Time Series Imputation

PyTorch implementation of 'Denoising Diffusion Probabilistic Models' This reposi

A Tour in the Wonderland of Math with Python A collection of python scripts for drawing beautiful figures and animating interesting algorithms in math

Minimal code and simple experiments to play with Denoising Diffusion Probabilist

Class-Attentive Diffusion Network for Semi-Supervised Classification Official Implementation of AAAI 2021 paper Class-Attentive Diffusion Network for

CCGL: Contrastive Cascade Graph Learning This repo provides a reference implementation of Contrastive Cascade Graph Learning (CCGL) framework as descr

jumpdiff jumpdiff is a python library with non-parametric Nadaraya─Watson estimators to extract the parameters of jump-diffusion processes. With jumpd

mrsd: a toolkit to generate MR sequence diagrams mrsd is a Python toolkit to generate MR sequence diagrams, as shown below for the basic FLASH sequenc

Text-Glided-Diffusion Installation First clone this repository: git clone https://github.com/afiaka87/text-glided-diffusion.git cd text-glided-diffusi

Latent Diffusion Models arXiv | BibTeX High-Resolution Image Synthesis with Latent Diffusion Models Robin Rombach*, Andreas Blattmann*, Dominik Lorenz

ReaDDy (Reaction Diffusion Dynamics) is an open source particle based reaction-diffusion simulator that can be configured and run via Python. Currentl

GLIDE This is the official codebase for running the small, filtered-data GLIDE model from GLIDE: Towards Photorealistic Image Generation and Editing w

Latent Diffusion Models Requirements A suitable conda environment named ldm can be created and activated with: conda env create -f environment.yaml co

DiffSinger: Singing Voice Synthesis via Shallow Diffusion Mechanism This repository is the official PyTorch implementation of our AAAI-2022 paper, in

v-diffusion-pytorch v objective diffusion inference code for PyTorch, by Katherine Crowson (@RiversHaveWings) and Chainbreakers AI (@jd_pressman). The

DiffSinger: Singing Voice Synthesis via Shallow Diffusion Mechanism This repository is the official PyTorch implementation of our AAAI-2022 paper, in

DeepDiffusion Introduction This repository provides the code of the DeepDiffusion algorithm for unsupervised learning of retrieval-adapted representat

Maximum Likelihood Training of Score-Based Diffusion Models This repo contains the official implementation for the paper Maximum Likelihood Training o

A Conditional Point Diffusion-Refinement Paradigm for 3D Point Cloud Completion This repo intends to release code for our work: Zhaoyang Lyu*, Zhifeng

ImageBART NeurIPS 2021 Patrick Esser*, Robin Rombach*, Andreas Blattmann*, Björn Ommer * equal contribution arXiv | BibTeX | Poster Requirements A sui

Disimpy Disimpy is a Python package for generating simulated diffusion-weighted MR signals that can be useful in the development and validation of dat

DAGAN This is the official implementation code for DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruct

Label-Efficient Semantic Segmentation with Diffusion Models Official implementation of the paper Label-Efficient Semantic Segmentation with Diffusion

Code for the Paper "Diffusion Models for Handwriting Generation"

WaveGrad Implementation (PyTorch) of Google Brain's high-fidelity WaveGrad vocoder (paper). First implementation on GitHub with high-quality generatio

Symbolic Music Generation with Diffusion Models Supplementary code release for our work Symbolic Music Generation with Diffusion Models. Installation

Diffusion Probabilistic Models This repository provides a reference implementation of the method described in the paper: Deep Unsupervised Learning us

Improved Techniques for Training Score-Based Generative Models This repo contains the official implementation for the paper Improved Techniques for Tr

PyTorch pretrained Diffusion Models A PyTorch reimplementation of Denoising Diffusion Probabilistic Models with checkpoints converted from the author'

Denoising Diffusion Probabilistic Models Jonathan Ho, Ajay Jain, Pieter Abbeel Paper: https://arxiv.org/abs/2006.11239 Website: https://hojonathanho.g

Denoising Diffusion Implicit Models (DDIM) Jiaming Song, Chenlin Meng and Stefano Ermon, Stanford Implements sampling from an implicit model that is t

Diffusion Probabilistic Models for 3D Point Cloud Generation [Paper] [Code] The official code repository for our CVPR 2021 paper "Diffusion Probabilis

jax-variational-diffwave Jax/Flax implementation of Variational-DiffWave. (Zhifeng Kong et al., 2020, Diederik P. Kingma et al., 2021.) DiffWave with

This repository contains a collection of resources and papers on Diffusion Models and Score-based Models. If there are any missing valuable resources

Stationary Diffusion State Neural Estimation Although many graph-based clustering methods attempt to model the stationary diffusion state in their obj

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

Multi-template MRI mouse brain atlas (both in vivo and ex vivo) Mouse Brain MRI atlas (both in-vivo and ex-vivo) (repository relocated from the origin

PyMPDATA PyMPDATA is a high-performance Numba-accelerated Pythonic implementation of the MPDATA algorithm of Smolarkiewicz et al. used in geophysical

Official implementation of VQ-Diffusion: Vector Quantized Diffusion Model for Text-to-Image Synthesis

Vector Quantized Diffusion Model for Text-to-Image Synthesis Overview This is the official repo for the paper: [Vector Quantized Diffusion Model for T

Blended Diffusion for Text-driven Editing of Natural Images Blended Diffusion for Text-driven Editing of Natural Images Omri Avrahami, Dani Lischinski

Unleashing Transformers: Parallel Token Prediction with Discrete Absorbing Diffusion for Fast High-Resolution Image Generation from Vector-Quantized C

Score-Based Generative Modeling through Stochastic Differential Equations This repo contains a PyTorch implementation for the paper Score-Based Genera

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

deepMRI: Deep learning methods for MRI Authors: Yang Gao, Hongfu Sun This repo is devloped based on Pytorch (1.8 or later) and matlab (R2019a or later

diffusion-channels Source code for paper "Deep Diffusion Models for Robust Channel Estimation". Generic flow: Use 'matlab/main.mat' to generate traini

Climate Modeling with Neural Diffusion Equation Introduction This is the repository of our accepted ICDM 2021 paper "Climate Modeling with Neural Diff

v-diffusion-jax v objective diffusion inference code for JAX, by Katherine Crowson (@RiversHaveWings) and Chainbreakers AI (@jd_pressman). The models

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

DiffuseAnimals: Reaction-Diffusion Models for the Generation of Biological Patterns Introduction Reaction-diffusion equations can be utilized in order

Realistic galaxy simulation via score-based generative models Official code for 'Realistic galaxy simulation via score-based generative models'. We us

sdeflow-light This is a minimalist codebase for training score-based diffusion models (supporting MNIST and CIFAR-10) used in the following paper "A V

Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder structure with deep supervision (—𝘜𝘕𝘦𝘵++). Built in TensorFlow 2.5. Configured for voxel-level clinically significant prostate cancer detection in multi-channel 3D bpMRI scans.

DeepXDE Voting on whether we should have a Slack channel for discussion. DeepXDE is a library for scientific machine learning. Use DeepXDE if you need

Diffusion Normalizing Flow (DiffFlow) Reproduce setup environment The repo heavily depends on jam, a personal toolbox developed by Qsh.zh. The API may

DBSegment This tool generates 30 deep brain structures segmentation, as well as a brain mask from T1-Weighted MRI. The whole procedure should take ~1

QSIprep: Preprocessing and analysis of q-space images Full documentation at https://qsiprep.readthedocs.io About qsiprep configures pipelines for proc

Documentation The documentation is available on populse_mia's website here Installation From PyPI, for users By cloning the package, for developers Fr

Code for Multinomial Diffusion Abstract Generative flows and diffusion models have been predominantly trained on ordinal data, for example natural ima

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

CLIP-Guided-Diffusion Just playing with getting CLIP Guided Diffusion running locally, rather than having to use colab. Original colab notebooks by Ka

ILVR + ADM This is the implementation of ILVR: Conditioning Method for Denoising Diffusion Probabilistic Models (ICCV 2021 Oral). This repository is h

bartpy Python bindings for BART. Overview This repo contains code to generate an updated Python wrapper for the Berkeley Advance Reconstruction Toolbo

Codebase for Diffusion Models Beat GANS on Image Synthesis.

Image Super-Resolution via Iterative Refinement Paper | Project Brief This is a unoffical implementation about Image Super-Resolution via Iterative Re

CLIP Guided Diffusion From RiversHaveWings. Generate vibrant and detailed images using only text. See captions and more generations in the Gallery See

GradTTS Unofficial Pytorch implementation of "Grad-TTS: A Diffusion Probabilistic Model for Text-to-Speech" (arxiv) About this repo This is an unoffic

U-Net for brain segmentation U-Net implementation in PyTorch for FLAIR abnormality segmentation in brain MRI based on a deep learning segmentation alg

NU-Wave — Official PyTorch Implementation NU-Wave: A Diffusion Probabilistic Model for Neural Audio Upsampling Junhyeok Lee, Seungu Han @ MINDsLab Inc

Denoising Diffusion Probabilistic Models This repo contains code for DDPM training. Based on Denoising Diffusion Probabilistic Models, Improved Denois

wechat-wow-analysis Understanding WeChat User Preferences and “Wow” Diffusion. Fanjin Zhang, Jie Tang, Xueyi Liu, Zhenyu Hou, Yuxiao Dong, Jing Zhang,

We present Graph Neural Diffusion (GRAND) that approaches deep learning on graphs as a continuous diffusion process and treats Graph Neural Networks (GNNs) as discretisations of an underlying PDE.

Denoising Diffusion Probabilistic Model for Proteins Implementation of Denoising Diffusion Probabilistic Model in Pytorch. It is a new approach to gen