Python Graph-analysis Resources

About The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficien

A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.

crypto-candlesticks 📈 The goal behind this project is to facilitate downloading cryptocurrency candlestick data fast & simple. Currently only the Bit

Synchrosqueezing is a powerful reassignment method that focuses time-frequency representations, and allows extraction of instantaneous amplitudes and frequencies

Dust-model-dichotomous-performance-analysis Using a collated dataset of 90,000 dust point source observations from 9 drylands studies from around the

Edge-augmented Graph Transformer Introduction This is the official implementation of the Edge-augmented Graph Transformer (EGT) as described in https:

CGPN This is the repository for the NeurIPS-21 paper [Contrastive Graph Poisson Networks: Semi-Supervised Learning with Extremely Limited Labels]. Req

Gihan Jayatilaka*, Jameel Hassan*, Suren Sritharan*, Janith Senananayaka, Harshana Weligampola, et. al., 2021. Holistic Interpretation of Public Scenes Using Computer Vision and Temporal Graphs to Identify Social Distancing Violations. arXiv preprint.

Decentralised graph database management system To get started clone the repo, and run the command below. python3 database.py Now, create a new termina

Stock-Market-AI-Analysis I dont mind anyone using this code but please give me credit A program that uses an API and a AI model to get info of stocks

Docker Network Graph Visualize the relationship between Docker networks and containers as a neat graphviz graph. Example Usage usage: docker-net-graph

Hist Hist is an analyst-friendly front-end for boost-histogram, designed for Python 3.7+ (3.6 users get version 2.4). See what's new. Installation You

Sentiment Analysis Sentiment analysis in computational linguistics is a general term for techniques that quantify sentiment or mood in a text. Can you

Charset Detection, for Everyone 👋 The Real First Universal Charset Detector A library that helps you read text from an unknown charset encoding. Moti

Hierarchical Clustering: O(1)-Approximation for Well-Clustered Graphs This repository contains code to accompany the paper "Hierarchical Clustering: O

WASP2 (Currently in pre-development): Allele-specific pipeline for unbiased read mapping(WIP), QTL discovery(WIP), and allelic-imbalance analysis Requ

Dual Correlation Reduction Network An official source code for paper Deep Graph Clustering via Dual Correlation Reduction, accepted by AAAI 2022. Any

Aspect-Category-Opinion-Sentiment (ACOS) Quadruple Extraction This repo contains the data sets and source code of our paper: Aspect-Category-Opinion-S

Sparse Structure Learning via Graph Neural Networks for inductive document classification Make graph dataset create co-occurrence graph for datasets.

How to apply? Create your config.ini file following the example provided in config.ini Choose one of the options below to run: Run with Python3 pip in

pandas is a Python package that provides fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive.

phantom-types Phantom types for Python will help you make illegal states unrepresentable and avoid shotgun parsing by enabling you to practice "Parse,

pytest-mypy-testing — Plugin to test mypy output with pytest pytest-mypy-testing provides a pytest plugin to test that mypy produces a given output. A

SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration

Clustergram Visualization and diagnostics for cluster analysis Clustergram is a diagram proposed by Matthias Schonlau in his paper The clustergram: A

SHGNN: Structure-Aware Heterogeneous Graph Neural Network The source code and dataset of the paper: SHGNN: Structure-Aware Heterogeneous Graph Neural

The yt Project yt is an open-source, permissively-licensed Python library for analyzing and visualizing volumetric data. yt supports structured, varia

Clustering Clustering Application in Python Using scikit-learn This repository contains the prediction of baseball metric clusters using MLB Statcast

Lambekseq "Everyone who failed Greek or Latin hates it." This package is for proving theorems in Categorial grammars (CG) and constructing semantic gr

gACSON gACSON software is to visualize, segment, and analyze the morphology of neurons in three-dimensional electron microscopy images. If you use any

RDFLib RDFLib is a pure Python package for working with RDF. RDFLib contains most things you need to work with RDF, including: parsers and serializers

PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data.

Titanic-data-analysis This Repo is an analysis on Titanic_mod.csv This csv file contains some assumed data of the Titanic ship after sinking This full

frida-ceserver frida-based ceserver. iOS analysis is possible with Cheat Engine. Original by Dark Byte. Usage Install python library. pip install pack

AITom Introduction AITom is an open-source platform for AI driven cellular electron cryo-tomography analysis. AITom is originated from the tomominer l

# 1. Installing Maven & Pandas First, please install Java (JDK11) and Python 3 if they are not already. Next, make sure that Maven (for importing J

LUNAR Official Implementation of "LUNAR: Unifying Local Outlier Detection Methods via Graph Neural Networks" Adam Goodge, Bryan Hooi, Ng See Kiong and

Privacy-Aware Inverse RL (PRIL) Analysis Framework Code, environments, and scripts for the paper: "How Private Is Your RL Policy? An Inverse RL Based

Contents AnonyGAN Installation Dataset Preparation Generating Images Using Pretrained Model Train and Test New Models Evaluation Acknowledgments Citat

PyPowSyBl The PyPowSyBl project gives access PowSyBl Java framework to Python developers. This Python integration relies on GraalVM to compile Java co

Monte Carlo python simulation Install linux dependencies sudo apt update sudo apt install build-essential \ software-properties-commo

WEATHER FORECASTING ACROSS THE WORLD Overview Python scripts were created to visualize the weather for over 500 cities across the world at varying di

Hippolyzer Hippolyzer is a revival of Linden Lab's PyOGP library targeting modern Python 3, with a focus on debugging issues in Second Life-compatible

Data-Analysis-Report Deployed App 1. What is this app? Upload an excel/csv file and produce a summary report of the data. 2. Where to upload? How to p

KIDA: Knowledge Inheritance in Data Aggregation This project releases our 1st place solution on NeurIPS2021 ML4CO Dual Task. Slide and model weights a

pandas-datareader Up to date remote data access for pandas, works for multiple versions of pandas. Installation Install using pip pip install pandas-d

Singer is an open source standard for moving data between databases, web APIs, files, queues, and just about anything else you can think of. Th

Sound Field Analysis toolbox for Python The sound_field_analysis toolbox (short: sfa) is a Python port of the Sound Field Analysis Toolbox (SOFiA) too

CogniPy for Pandas - In-memory Graph Database and Knowledge Graph with Natural Language Interface Whats in the box Reasoning, exploration of RDF/OWL,

MDAnalysis Repository README [*] MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale,

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

Vim plugin for executing Python's optional static type checker MyPy

WSDM 2022 Large-scale Temporal Graph Link Prediction - Baseline and Initial Test Set WSDM Cup Website link Link to this challenge This branch offers A

HetGAN Implementation of Heterogeneous Graph Attention Network This is the code repository of paper "Prediction of Metro Ridership During the COVID-19

Knowledge Graph Embeddings and Chemical Effect Prediction, 2020. Scripts and outputs related to the paper Prediction of Adverse Biological Effects of

Enhancing Column Generation by a Machine-Learning-BasedPricing Heuristic for Graph Coloring (to appear at AAAI 2022) We propose a machine-learning-bas

AKGNN The source code for Adaptive Kernel Graph Neural Network at AAAI2022. Please cite our paper if you think our work is helpful to you: @inproceedi

Wikidated Wikidated 1.0 is a dataset of Wikidata’s full revision history, which encodes changes between Wikidata revisions as sets of deletions and ad

Automated Side Channel Analysis of Media Software with Manifold Learning Official implementation of USENIX Security 2022 paper: Automated Side Channel

Timesketch Table of Contents About Timesketch Getting started Community Contributing About Timesketch Timesketch is an open-source tool for collaborat

Vega-Lite Vega-Lite provides a higher-level grammar for visual analysis that generates complete Vega specifications. You can find more details, docume

DiffMG This repository contains the code for our KDD 2021 Research Track paper: DiffMG: Differentiable Meta Graph Search for Heterogeneous Graph Neura

Flyte Flyte is a workflow automation platform for complex, mission-critical data, and ML processes at scale Home Page · Quick Start · Documentation ·

Pachyderm: The Data Foundation for Machine Learning Pachyderm provides the data layer that allows machine learning teams to productionize and scale th

BigGAN Audio Visualizer Description This visualizer explores BigGAN (Brock et al., 2018) latent space by using pitch/tempo of an audio file to generat

PyCRE Conflict-aware Inference of Python Compatible Runtime Environments with Domain Knowledge Graph, ICSE 2022 Dependencies This project is developed

Data Analysis for First Year Laboratory at Imperial College, London. For personal reference only, and to reference in lab reports and lab books.

KoSentimentAnalysis Bert implementation for the Korean multi-class sentiment analysis 왜 한국어 감정 다중분류 모델은 거의 없는 것일까?에서 시작된 프로젝트 Environment: Pytorch, Da

LUNAR Official Implementation of "LUNAR: Unifying Local Outlier Detection Methods via Graph Neural Networks" Adam Goodge, Bryan Hooi, Ng See Kiong and

CRGNN Paper ： Improving the Training of Graph Neural Networks with Consistency Regularization Environments Implementing environment: GeForce RTX™ 3090

Junction Tree Variational Autoencoder for Molecular Graph Generation Official implementation of our Junction Tree Variational Autoencoder https://arxi

Hashtag segmentation is the task of automatically inserting the missing spaces between the words in a hashtag. Hashformers applies Transformer models

MINERVA Meandering In Networks of Entities to Reach Verisimilar Answers Code and models for the paper Go for a Walk and Arrive at the Answer - Reasoni

EmTract: Extracting Emotions from Social Media Text Tailored for Financial Contexts EmTract is a tool that extracts emotions from social media text. I

CCasGNN A new framework, collaborative cascade prediction based on graph neural networks (CCasGNN) to jointly utilize the structural characteristics,

Graph Neural Controlled Differential Equations for Traffic Forecasting Setup Python environment for STG-NCDE Install python environment $ conda env cr

Graph WaveNet for brain network analysis This is the implementation of the Graph WaveNet model used in our manuscript: S. Wein , A. Schüller, A. M. To

CRGNN Paper ： Improving the Training of Graph Neural Networks with Consistency Regularization Environments Implementing environment: GeForce RTX™ 3090

README Needs to be improved Prerequisites Need to have graphiz installed on the machine. Refer to https://graphviz.readthedocs.io/en/stable/manual.htm

Re-Scripts IA32-VMX-Helper (IDA-Script) IA32-MSR-Decoder (IDA-Script) IA32 VMX Helper It's an IDA script (Updated IA32 MSR Decoder) which helps you to

Federated learning on graph, especially on graph neural networks (GNNs), knowledge graph, and private GNN.

Papers about explainability of GNNs

subgraph-extractor Extracts data from the database for a graph-node and stores it in parquet files Installation For developing, it's recommended to us

deepface Deepface is a lightweight face recognition and facial attribute analysis (age, gender, emotion and race) framework for python. It is a hybrid

PymUSAS Python Multilingual Ucrel Semantic Analysis System, it currently is a rule based token level semantic tagger which can be added to any spaCy p

PyCellID (building...) Functions to analyze Cell-ID single-cell cytometry data using python language. Dependecies for this project. attrs(=21.1.0) fo

Neuroanalysis Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology. Functions for runnin

Hierarchical Attention Networks for Document Classification This is an implementation of the paper Hierarchical Attention Networks for Document Classi

Intro Real-time object detection and classification. Paper: version 1, version 2. Read more about YOLO (in darknet) and download weight files here. In

ASCII Graph Plotter Plots the graph of a function with ASCII characters. See the change log here. Developed by InformaticFreak (c) 2021 How to use py

Image-Exif A Python script for extracting exif metadata from images. How to use? Using this script you can extract exif data from image and save in .c

Graph Posterior Network This is the official code repository to the paper Graph Posterior Network: Bayesian Predictive Uncertainty for Node Classifica

Convert ONNX model graph to Keras model format.

CTO (Call Tree Overviewer) CTO (Call Tree Overviewer) is an IDA plugin for creating a simple and efficiant function call tree graph. It can also summa

DeepIntegralCompton Deep Learning applied to Integral data analysis Module installation Move to the root directory of the project and execute : pip in

My Analysis of the VC4 Assembly Code from the RPI4

Scripts for BGC analysis in large MAGs and results of their application to soil metagenomes within Chernevaya Taiga RSF-funded project

CAPGNN Source code and dataset of the paper "Contrastive Adaptive Propagation Graph Neural Networks forEfficient Graph Learning" Paper URL: https://ar

HTSeq DEVS: https://github.com/htseq/htseq DOCS: https://htseq.readthedocs.io A Python library to facilitate programmatic analysis of data from high-t

TC-GNN (Running Sparse GNN on Dense Tensor Core on Ampere GPU) Cite this project and paper. @inproceedings{TC-GNN, title={TC-GNN: Accelerating Spars