Python Graph-analysis Resources

Graph Convolutional Gated Recurrent Neural Network (GCGRNN) Improved from Graph Convolutional Neural Networks with Data-driven Graph Filter (GCNN-DDGF

zEpid zEpid is an epidemiology analysis package, providing easy to use tools for epidemiologists coding in Python 3.5+. The purpose of this library is

Python-for-Epidemiologists This repository is an introduction to epidemiology analyses in Python. Additionally, the tutorials for my library zEpid are

Explorative Data Analysis Get data into a usable format! Find out if the following predictive modeling phase will be successful! Combine everything in

Kaggler is a Python package for lightweight online machine learning algorithms and utility functions for ETL and data analysis. It is distributed under the MIT License.

MCML is a toolkit for semi-supervised dimensionality reduction and quantitative analysis of Multi-Class, Multi-Label data. We demonstrate its use

pl_prompt_sst An example project using OpenPrompt under the framework of pytorch-lightning for a training prompt-based text classification model on SS

Prince is a library for doing factor analysis. This includes a variety of methods including principal component analysis (PCA) and correspondence anal

giotto-tda is a high-performance topological machine learning toolbox in Python built on top of scikit-learn and is distributed under the G

Scanpy – Single-Cell Analysis in Python Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It inc

Falcon: Interactive Visual Analysis for Big Data Crossfilter millions of records without latencies. This project is work in progress and not documente

Welcome to Streamlit 👋 The fastest way to build and share data apps. Streamlit lets you turn data scripts into sharable web apps in minutes, not week

Introduction to Geospatial Analysis in Python This repository is in support of a talk on geospatial data. Data To recreate all of the examples, the da

Infomap Infomap is a network clustering algorithm based on the Map equation. For detailed documentation, see mapequation.org/infomap. For a list of re

Tensor Component Analysis for Interpreting the Latent Space of GANs [ paper | project page ] Code to reproduce the results in the paper "Tensor Compon

Stock and Index Beta Calculator Python script that calculates the beta (β) of a stock against the chosen index. The script retrieves the data and resa

KXY: A Seemless API to 10x The Productivity of Machine Learning Engineers Documentation https://www.kxy.ai/reference/ Installation From PyPi: pip inst

Detectron2 trained on PubLayNet dataset This repo contains the training configurations, code and trained models trained on PubLayNet dataset using Det

Python Blood Vessel Topology Analysis This repository is not being updated anymore. The new version of PyVesTo is called PyVaNe and is available at ht

Emotion Recognition in Conversations Updates 🔥 🔥 🔥 Date Announcements 03/08/2021 🎆 🎆 We have released a new dataset M2H2: A Multimodal Multiparty

Overview of OpenPNM OpenPNM is a comprehensive framework for performing pore network simulations of porous materials. More Information For more detail

This is a tool to help you quickly solve classification problems including: data analysis, training, report results and model explanation.

Pigment The problem of partitioning up a skincare regime into parts such that each part does not interfere with itself is equivalent to the minimal cl

Scripts for "Current best-practices in single-cell RNA-seq: a tutorial" This repository is complementary to the publication: M.D. Luecken, F.J. Theis,

Youtube video details analyser Steps to run this project Please set the AuthKey which you can fetch from google developer console and paste it in the

zeus is a Python implementation of the Ensemble Slice Sampling method. Fast & Robust Bayesian Inference, Efficient Markov Chain Monte Carlo (MCMC), Bl

Face Recognition: Too Bias, or Not Too Bias? Robinson, Joseph P., Gennady Livitz, Yann Henon, Can Qin, Yun Fu, and Samson Timoner. "Face recognition:

Predicting Yelp Review Quality Table of Contents Introduction Motivation Goal and Central Questions The Data Data Storage and ETL EDA Data Pipeline Da

Code has been run on Google Colab, thanks Google for providing computational resources Contents Natural Language Processing（自然语言处理） Text Classificati

ORCCA Optimal Randomized Canonical Correlation Analysis This project is for the python version of ORCCA algorithm. It depends on Numpy for matrix calc

By Investors, For Investors. Want to read this in Chinese? Click here Empyrial is a Python-based open-source quantitative investment library dedicated

Sentiment Analysis on Yelp's Dataset Author: Roberto Sanchez, Talent Path: D1 Group Docker Deployment: Deployment of this application can be found her

Trading Tesla with Machine Learning and Sentiment Analysis An interactive program to train a Random Forest Classifier to predict Tesla daily prices us

py_neuromodulation Click this button to run the "Tutorial ML with py_neuro" notebooks: The py_neuromodulation toolbox allows for real time capable pro

Twitter COVID-19 Sentiment Analysis Members: Christopher Bach | Khalid Hamid Fallous | Jay Hirpara | Jing Tang | Graham Thomas | David Wetherhold Pro

Conversational text Analysis using various NLP techniques

japanese-ebook-analysis This aim of this project is to make analysing the contents of a japanese ebook easy and streamline the process for non-technic

dumpulator Note: This is a work-in-progress prototype, please treat it as such. An easy-to-use library for emulating code in minidump files. Example T

Ohm-s-Law-Visualizer It's an application to calculate I from v and r using Ohm's Law. It can also plot a graph between V vs I. Story I'm doing my Unde

Implementing Graph Convolutional Networks and Information Retrieval Mechanisms using pure Python and NumPy

GN-Transformer AST This is the official repository for the paper "GN-Transformer: Fusing AST and Source Code information in Graph Networks". Data Prep

English | 简体中文 Latest News 2021.10.25 Paper "Docking-based Virtual Screening with Multi-Task Learning" is accepted by BIBM 2021. 2021.07.29 PaddleHeli

A multi-platform GUI for bit-based analysis, processing, and visualization

Render tokei's output to interactive sunburst chart.

GemNet: Universal Directional Graph Neural Networks for Molecules Reference implementation in PyTorch of the geometric message passing neural network

Long Short-Term Transformer for Online Action Detection Introduction This is a PyTorch implementation for our NeurIPS 2021 Spotlight paper "Long Short

TensorFlow GNN This is an early (alpha) release to get community feedback. It's under active development and we may break API compatibility in the fut

Location-Aware Generative Adversarial Networks (LAGAN) for Physics Synthesis This repository contains all the code used in L. de Oliveira (@lukedeo),

Sentiment Analysis Project This project contains two sentiment analysis programs for Hotel Reviews using a Hotel Reviews dataset from Datafiniti. The

Some tentative models that incorporate label propagation to graph neural networks for graph representation learning in nodes, links or graphs.

Housegan-data-reader House-GAN++ (data-reader) Code and instructions for converting rplan dataset (raster images) to housegan++ data format. House-GAN

Graph Nets library Graph Nets is DeepMind's library for building graph networks in Tensorflow and Sonnet. Contact [email protected] for comments a

HDBSCAN HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates

FCPS Fundamental Clustering Problems Suite The package provides over sixty state-of-the-art clustering algorithms for unsupervised machine learning pu

tree-SNE t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in s

Description Kats is a toolkit to analyze time series data, a lightweight, easy-to-use, and generalizable framework to perform time series analysis. Ti

pmdarima Pmdarima (originally pyramid-arima, for the anagram of 'py' + 'arima') is a statistical library designed to fill the void in Python's time se

pmdarima Pmdarima (originally pyramid-arima, for the anagram of 'py' + 'arima') is a statistical library designed to fill the void in Python's time se

GENDIS GENetic DIscovery of Shapelets In the time series classification domain, shapelets are small subseries that are discriminative for a certain cl

CG3 This is the repository for the AAAI 21 paper [Contrastive and Generative Graph Convolutional Networks for Graph-based Semi-Supervised Learning]. R

An experimental Python-to-C transpiler and domain specific language for embedded high-performance computing

Time2box Implementation of [Time in a Box: Advancing Knowledge Graph Completion with Temporal Scopes].

Welcome to Official repository of deepflash2 - a deep-learning pipeline for segmentation of ambiguous microscopic images. Quick Start in 30 seconds se

CID3 This is a full-featured Decision Trees and Random Forests learner. It can save trees or forests to disk for later use. It is possible to query tr

Memotion Analysis Through The Lens Of Joint Embedding This repository contains the experiments conducted as described in the paper 'Memotion Analysis

kwd-extraction-study This repository is maintained for the scientific paper tittled " Study of keyword extraction techniques for Electric Double Layer

Stochastic Model Building (SMB) This repository includes a new fast and robust stochastic optimization algorithm for training deep learning models. Th

HaloGraphNet Predict halo masses from simulations via Graph Neural Networks. Given a dark matter halo and its galaxies, creates a graph with informati

Stochastic Extragradient: General Analysis and Improved Rates This repository is the official implementation of the paper "Stochastic Extragradient: G

Interpreting Language Models Through Knowledge Graph Extraction Idea: How do we interpret what a language model learns at various stages of training?

Interactive Web App with Streamlit and Scikit-learn that applies different Classification algorithms to popular datasets Datasets Used: Iris dataset,

Introduction MASS allows you to search a time series for a subquery resulting in an array of distances. These array of distances enable you to identif

QuantStats: Portfolio analytics for quants QuantStats Python library that performs portfolio profiling, allowing quants and portfolio managers to unde

scikit-survival scikit-survival is a Python module for survival analysis built on top of scikit-learn. It allows doing survival analysis while utilizi

survivalstan: Survival Models in Stan author: Jacki Novik Overview Library of Stan Models for Survival Analysis Features: Variety of standard survival

PySurvival What is Pysurvival ? PySurvival is an open source python package for Survival Analysis modeling - the modeling concept used to analyze or p

Package: dsm Python package dsm provides an API to train the Deep Survival Machines and associated models for problems in survival analysis. The under

Banpei Banpei is a Python package of the anomaly detection. Anomaly detection is a technique used to identify unusual patterns that do not conform to

Causal Inference 360 A Python package for inferring causal effects from observational data. Description Causal inference analysis enables estimating t

moDel Agnostic Language for Exploration and eXplanation Overview Unverified black box model is the path to the failure. Opaqueness leads to distrust.

EZ-Graph EZ Graph is a GUI that allows users to make and train neural networks without writing a single line of code. Requirements python 3 pandas num

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

A combination of autoregressors and autoencoders using XLNet for sentiment analysis Abstract In this paper sentiment analysis has been performed in or

GATER This repository contains the code for our EMNLP 2021 paper “Heterogeneous Graph Neural Networks for Keyphrase Generation”. Our implementation is

GraphWar: Arms Race in Graph Adversarial Learning NOTE: GraphWar is still in the early stages and the API will likely continue to change. 🚀 Installat

Sentiment analysis on streaming twitter data using Spark Structured Streaming & Python This project is a good starting point for those who have little

GOAT A paper using optimal transport to solve the graph matching problem. https://arxiv.org/abs/2111.05366 Repo structure .github: Files specifying ho

isvd Official implementation of NeurIPS'21: Implicit SVD for Graph Representation Learning If you find this code useful, you may cite us as: @inprocee

Climate Modeling with Neural Diffusion Equation Introduction This is the repository of our accepted ICDM 2021 paper "Climate Modeling with Neural Diff

quick_eda Receiving dataframe statistics with one command Project description A python package for Data Scientists, Students, ML Engineers and anyone

Data Scientist in Simple Stock Analysis of PT Bukalapak.com Tbk for Long Term Investment Brief explanation of PT Bukalapak.com Tbk Bukalapak was found

Numerics Numerical Analysis toolkit centred around PDEs, for demonstration and understanding purposes not production Use procedure: Initialise a new i

Deep Neural Network Prediction Step 1. Genernate random parameters and Run them sequentially : $ python3 collect_data.py -gp -ep -pp -pl pooling -num

strava-offline Overview strava-offline is a tool to keep a local mirror of Strava activities for further analysis/processing: synchronizes metadata ab

nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order

SGTL - Spectral Graph Theory Library SGTL is a python library of spectral graph theory methods. The library is still very new and so there are many fe

ICS-Visualizer is an interactive Industrial Control Systems (ICS) network graph that contains up-to-date ICS metadata (Name, company, port, user manua

qg-edgeofchaos Analysis scripts for QG equations FIle/Folder Structure eigensolvers.py - Spectral and finite-difference solvers for Rossby wave eigenf

Log processor for nginx or apache that extracts user and user sessions and calculates other types of useful data for bot detection or traffic analysis

A Python adaption of Augur to prioritize cell types in perturbation analysis.