Python Graph-libraries Resources

PGExplainer This is a Tensorflow implementation of the paper: Parameterized Explainer for Graph Neural Network https://arxiv.org/abs/2011.04573 NeurIP

A collection of research papers and software related to explainability in graph machine learning.

PyKEEN PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-m

Binance Report Bot The intent of this bot is to take a snapshot of your binance wallet, e.g. the current balances and store it for further plotting. I

CLIPPER: A Graph-Theoretic Framework for Robust Data Association Data association is a fundamental problem in robotics and autonomy. CLIPPER provides

Self-supervised Graph-level Representation Learning with Local and Global Structure Introduction This project is an implementation of ``Self-supervise

Heterogeneous INteract and aggreGatE (GraphHINGE) This is a pytorch implementation of GraphHINGE model. This is the experiment code in the following w

Box is a text-based visual programming language inspired by Unreal Engine blueprint function graphs. $ cat factorial.box ┌─ƒ(Factorial)───┐

GCResNet PyTorch implementation of Graph Convolutional Networks in Feature Space for Image Deblurring and Super-resolution, IJCNN 2021. The code will

This is my reading list for my PhD in AI, NLP, Deep Learning and more.

GPRGNN This is the source code for our ICLR2021 paper: Adaptive Universal Generalized PageRank Graph Neural Network. Hidden state feature extraction i

Physics-aware Difference Graph Networks for Sparsely-Observed Dynamics This repository is the official PyTorch implementation of "Physics-aware Differ

Learning Canonical Representations for Scene Graph to Image Generation (ECCV 2020) Roei Herzig*, Amir Bar*, Huijuan Xu, Gal Chechik, Trevor Darrell, A

Graph-to-Graph Transformers Self-attention models, such as Transformer, have been hugely successful in a wide range of natural language processing (NL

Graph4NLP Graph4NLP is an easy-to-use library for R&D at the intersection of Deep Learning on Graphs and Natural Language Processing (i.e., DLG4NLP).

Graph Transformer - Pytorch Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2. This was recently used by bot

DeepCDR Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network This work has been accepted to ECCB2020 and was also published in the

FinGAT: A Financial Graph Attention Networkto Recommend Top-K Profitable Stocks This is our implementation for the paper: FinGAT: A Financial Graph At

Random Walk Graph Neural Networks This repository is the official implementation of Random Walk Graph Neural Networks. Requirements Code is written in

SmartSim makes it easier to use common Machine Learning (ML) libraries like PyTorch and TensorFlow, in High Performance Computing (HPC) simulations and workloads.

JittorVis - Visual understanding of deep learning model.

AWS_ORG_MAPPER This tool uses sso-oidc to authenticate to the AWS organization. Once authenticated the tool will attempt to enumerate all users and ro

Python Repeated Timer Python-Repeated-Timer is an open-source & highly performing timer using only standard-libraries.

We present Graph Neural Diffusion (GRAND) that approaches deep learning on graphs as a continuous diffusion process and treats Graph Neural Networks (GNNs) as discretisations of an underlying PDE.

The final code for OGB Installation Requirements: ogb=1.3.1 torch=1.7.0 torch-geometric=1.7.0 torch-scatter=2.0.6 torch-sparse=0.6.9 Baseline models T

PyAV PyAV is a Pythonic binding for the FFmpeg libraries. We aim to provide all of the power and control of the underlying library, but manage the gri

LMs for biomedical KG completion This repository contains code to run the experiments described in: Scientific Language Models for Biomedical Knowledg

Graph Contrastive Learning Automated PyTorch implementation for Graph Contrastive Learning Automated [talk] [poster] [appendix] Yuning You, Tianlong C

This is the repo for the paper: Leveraging Two Types of Global Graph for Sequential Fashion Recommendation Requirements OS: Ubuntu 16.04 or higher ver

Deep Reinforcement Learning Library built on top of Neural Network Libraries NNablaRL is a deep reinforcement learning library built on top of Neural

Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl

PyGAS: Auto-Scaling GNNs in PyG PyGAS is the practical realization of our G NN A uto S cale (GAS) framework, which scales arbitrary message-passing GN

Graph-to-Tree Learning for Solving Math Word Problems PyTorch implementation of Graph based Math Word Problem solver described in our ACL 2020 paper G

Chippure A Chip-8 emulator written using Python's default libraries. Instructions: Simply launch the .py file and type the name of the Chip8 ROM you w

[TensorFlow] Protein Interface Prediction using Graph Convolutional Networks Unofficial TensorFlow implementation of Protein Interface Prediction usin

GSDN-F and GSDN-EF This repository provides a reference implementation of GSDN-F and GSDN-EF as described in the paper "Understanding Graph Neural Net

Degree-Quant This repo provides a clean re-implementation of the code associated with the paper Degree-Quant: Quantization-Aware Training for Graph Ne

This is a set of libraries for automating Cisco devices (and to a lesser extent, bash prompts) over ssh/telnet in SecureCRT.

ProcrustEs-KGE Paddle implementation for Highly Efficient Knowledge Graph Embedding Learning with Orthogonal Procrustes Analysis 🙈 A more detailed re

How Attentive are Graph Attention Networks? This repository is the official implementation of How Attentive are Graph Attention Networks?. The PyTorch

SparseML is a toolkit that includes APIs, CLIs, scripts and libraries that apply state-of-the-art sparsification algorithms such as pruning and quantization to any neural network. General, recipe-driven approaches built around these algorithms enable the simplification of creating faster and smaller models for the ML performance community at large.

SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization This is the code for our paper ``SumGNN: Multi-typed Drug

GCN-LPA This repository is the implementation of GCN-LPA (arXiv): Unifying Graph Convolutional Neural Networks and Label Propagation Hongwei Wang, Jur

Simple Spectral Graph Convolutional Overview This repo contains an example implementation of the Simple Spectral Graph Convolutional (S^2GC) model. Th

Grapy-ML: Graph Pyramid Mutual Learning for Cross-dataset Human Parsing This repository contains pytorch source code for AAAI2020 oral paper: Grapy-ML

Factor graphs + nonlinear optimization in JAX

OEIS explorer This is a tool for exploring two different kinds of relationships between sequences in the OEIS: mentions (links) of other sequences on

DeepFRI Deep functional residue identification Citing @article {Gligorijevic2019, author = {Gligorijevic, Vladimir and Renfrew, P. Douglas and Koscio

Microsoft contributing libraries, tools, recipes, sample codes and workshop contents for machine learning & deep learning.

If the compilation is successful, the evaluator of cpp implementation will be called automatically. Otherwise, the evaluator of python implementation will be called.

DDAMS This is the pytorch code for our IJCAI 2021 paper Dialogue Discourse-Aware Graph Model and Data Augmentation for Meeting Summarization [Arxiv Pr

An Unsupervised Graph-based Toolbox for Fraud Detection Introduction: UGFraud is an unsupervised graph-based fraud detection toolbox that integrates s

When2com: Multi-Agent Perception via Communication Graph Grouping This is the PyTorch implementation of our paper: When2com: Multi-Agent Perception vi

Expressive Power of Invariant and Equivaraint Graph Neural Networks In this repository, we show how to use powerful GNN (2-FGNN) to solve a graph alig

GCA Source code for Graph Contrastive Learning with Adaptive Augmentation (WWW 2021) For example, to run GCA-Degree under WikiCS, execute: python trai

CVZone This is a Computer vision package that makes its easy to run Image processing and AI functions. At the core it uses OpenCV and Mediapipe librar

Esparto is a simple HTML and PDF document generator for Python. Its primary use is for generating shareable single page reports with content from popular analytics and data science libraries.

python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu

PairRE Code for paper PairRE: Knowledge Graph Embeddings via Paired Relation Vectors. This implementation of PairRE for Open Graph Benchmak datasets (

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks Molecular interaction networks are powerful resources for the discovery. While dee

Graph-Based Protein Design This repo contains code for Generative Models for Graph-Based Protein Design by John Ingraham, Vikas Garg, Regina Barzilay

Desmos Bezier Renderer A simple image/video to Desmos graph converter run locally Sample Result Setup Install dependencies apt update apt install git

FedGraphNN: A Federated Learning System and Benchmark for Graph Neural Networks A Research-oriented Federated Learning Library and Benchmark Platform

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs Jiong Zhu, Yujun Yan, Lingxiao Zhao, Mark Heimann, Leman Akoglu,

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

Introduction This is the PyTorch implementation for Adaptive Graph Representation Learning for Video Person Re-identification. Get started git clone h

Learning Knowledge Bases with Parameters for Task-Oriented Dialogue Systems This is the implementation of the paper: Learning Knowledge Bases with Par

End-to-End Optimization of Scene Layout Code release for: End-to-End Optimization of Scene Layout CVPR 2020 (Oral) Project site, Bibtex For help conta

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

This repository contains code to train and test GNN models for recommendation, mainly using the Deep Graph Library (DGL).

SpikeX is a collection of pipes ready to be plugged in a spaCy pipeline. It aims to help in building knowledge extraction tools with almost-zero effort.

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

Few-shot Graph Learning for Molecular Property Prediction Introduction This is the source code and dataset for the following paper: Few-shot Graph Lea

Knowledge Graph,Question Answering System，基于知识图谱和向量检索的医疗诊断问答系统

GraphMask This repository contains an implementation of GraphMask, the interpretability technique for graph neural networks presented in our ICLR 2021

libmaths libmaths was created not only as a learning experience for me, but as a way to make mathematical models in seconds for Python users using mat

Legate The Legate project endeavors to democratize computing by making it possible for all programmers to leverage the power of large clusters of CPUs

Neighbor Averaging over Relation Subgraphs (NARS) NARS is an algorithm for node classification on heterogeneous graphs, based on scalable neighbor ave

My Body is a Cage: the Role of Morphology in Graph-Based Incompatible Control

QA-GNN: Question Answering using Language Models and Knowledge Graphs This repo provides the source code & data of our paper: QA-GNN: Reasoning with L

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

Comprehensive and Rigorous Framework for Reproducible Recommender Systems Evaluation

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

OSMnet Tools for the extraction of OpenStreetMap (OSM) street network data. Intended to be used in tandem with Pandana and UrbanAccess libraries to ex

PyTorch code for the paper "Curriculum Graph Co-Teaching for Multi-target Domain Adaptation" (CVPR2021) This repo presents PyTorch implementation of M

STAR-FC This code is the implementation for the CVPR 2021 paper "Structure-Aware Face Clustering on a Large-Scale Graph with 10^7 Nodes" 🌟 🌟 . 🎓 Re

FAU Implementation of the paper: Facial Action Unit Intensity Estimation via Semantic Correspondence Learning with Dynamic Graph Convolution. Yingruo

NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

Rethinking Graph Neural Architecture Search from Message-passing Intro The GNAS can automatically learn better architecture with the optimal depth of

SiamGAT 1. Environment setup This code has been tested on Ubuntu 16.04, Python 3.5, Pytorch 1.2.0, CUDA 9.0. Please install related libraries before r

A Critical Assessment of State-of-the-Art in Entity Alignment This repository contains the source code for the paper A Critical Assessment of State-of

Spectral Temporal Graph Neural Network for Multivariate Time-series Forecasting This repository is the official implementation of Spectral Temporal Gr

Framework for abstracting Amiga debuggers. This project provides abstration to control an Amiga remotely using a debugger. The APIs are not yet stable

skggm : Gaussian graphical models using the scikit-learn API In the last decade, learning networks that encode conditional independence relationships

Scikit-TDA is a home for Topological Data Analysis Python libraries intended for non-topologists. This project aims to provide a curated library of TD

Mlxtend (machine learning extensions) is a Python library of useful tools for the day-to-day data science tasks. Sebastian Raschka 2014-2021 Links Doc

cuGraph - GPU Graph Analytics The RAPIDS cuGraph library is a collection of GPU accelerated graph algorithms that process data found in GPU DataFrames

Package Description scikit-cuda provides Python interfaces to many of the functions in the CUDA device/runtime, CUBLAS, CUFFT, and CUSOLVER libraries

CoMatch: Semi-supervised Learning with Contrastive Graph Regularization (Salesforce Research) This is a PyTorch implementation of the CoMatch paper [B