Python Medical-imaging-datasets Resources

Towards Good Practices for Efficiently Annotating Large-Scale Image Classification Datasets This is the official implementation of "Towards Good Pract

SeqIO: Task-based datasets, preprocessing, and evaluation for sequence models. SeqIO is a library for processing sequential data to be fed into downst

Combining Events and Frames using Recurrent Asynchronous Multimodal Networks for Monocular Depth Prediction This is the code for the paper Combining E

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

🤗 The largest hub of ready-to-use NLP datasets for ML models with fast, easy-to-use and efficient data manipulation tools

Debiasing Item-to-Item Recommendations With Small Annotated Datasets This is the code for our RecSys '20 paper. Other materials can be found here: Ful

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

DoDNet This repo holds the pytorch implementation of DoDNet: DoDNet: Learning to segment multi-organ and tumors from multiple partially labeled datase

Datasets from Instructions (DINO 🦕 ) This repository contains the code for Generating Datasets with Pretrained Language Models. The paper introduces

drawdata This small python app allows you to draw a dataset in a jupyter notebook. This should be very useful when teaching machine learning algorithm

Trove Trove is a research framework for building weakly supervised (bio)medical named entity recognition (NER) and other entity attribute classifiers

Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo

This tutorial's purpose is to introduce Pythonistas to methods for scaling their data science and machine learning work to larger datasets and larger models, using the tools and APIs they know and love from the PyData stack (such as numpy, pandas, and scikit-learn).

rio-tiler User friendly Rasterio plugin to read raster datasets. Documentation: https://cogeotiff.github.io/rio-tiler/ Source Code: https://github.com

USGS API USGS is a python module for interfacing with the US Geological Survey's API. It provides submodules to interact with various endpoints, and c

rasterstats rasterstats is a Python module for summarizing geospatial raster datasets based on vector geometries. It includes functions for zonal stat

wav2vec-toolkit A collection of scripts to preprocess ASR datasets and finetune language-specific Wav2Vec2 XLSR models This repository accompanies the

CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee

UA-GEC: Grammatical Error Correction and Fluency Corpus for the Ukrainian Language This repository contains UA-GEC data and an accompanying Python lib

A collection of loss functions for medical image segmentation

P-tuning A novel method to tune language models. Codes and datasets for paper ``GPT understands, too''. How to use our code We have released the code

SASSnet Code for paper: Shape-aware Semi-supervised 3D Semantic Segmentation for Medical Images(MICCAI 2020) Our code is origin from UA-MT You can fin

Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me

imbalanced-learn imbalanced-learn is a python package offering a number of re-sampling techniques commonly used in datasets showing strong between-cla

Petastorm Contents Petastorm Installation Generating a dataset Plain Python API Tensorflow API Pytorch API Spark Dataset Converter API Analyzing petas

matrixprofile-ts matrixprofile-ts is a Python 2 and 3 library for evaluating time series data using the Matrix Profile algorithms developed by the Keo

Technical Analysis Library in Python It is a Technical Analysis library useful to do feature engineering from financial time series datasets (Open, Cl

Rasterio Rasterio reads and writes geospatial raster data. Geographic information systems use GeoTIFF and other formats to organize and store gridded,

Maths from examples - Learning advanced mathematical computations from examples This is the source code and data sets relevant to the paper Learning a

FedDG: Federated Domain Generalization on Medical Image Segmentation via Episodic Learning in Continuous Frequency Space by Quande Liu, Cheng Chen, Ji

OCR Resources This repository contains a collection of resources (including the papers and datasets) of OCR (Optical Character Recognition). Contents

Dataset Cartography Code for the paper Dataset Cartography: Mapping and Diagnosing Datasets with Training Dynamics at EMNLP 2020. This repository cont

TrajNet++ : The Trajectory Forecasting Framework PyTorch implementation of Human Trajectory Forecasting in Crowds: A Deep Learning Perspective TrajNet

Datasette An open source multi-tool for exploring and publishing data Datasette is a tool for exploring and publishing data. It helps people take data

CoTr: Efficient 3D Medical Image Segmentation by bridging CNN and Transformer This is the official pytorch implementation of the CoTr: Paper: CoTr: Ef

BatchFlow BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflo

torchvision The torchvision package consists of popular datasets, model architectures, and common image transformations for computer vision. Installat

imbalanced-learn imbalanced-learn is a python package offering a number of re-sampling techniques commonly used in datasets showing strong between-cla

Simple multi-dataset detection An object detector trained on multiple large-scale datasets with a unified label space; Winning solution of E

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

Xpublish Publish Xarray Datasets via a REST API. Serverside: Publish a Xarray Dataset through a rest API ds.rest.serve(host="0.0.0.0", port=9000) Clie

Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo

Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou

TransUNet This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation Usage

xarray is an open source project and Python package that makes working with labelled multi-dimensional arrays simple, efficient, and fun!

NeuralQA: A Usable Library for (Extractive) Question Answering on Large Datasets with BERT Still in alpha, lots of changes anticipated. View demo on n

ParlAI (pronounced “par-lay”) is a python framework for sharing, training and testing dialogue models, from open-domain chitchat, to task-oriented dia

ivis Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets. Ivis

The open-source tool for building high-quality datasets and computer vision models. Website • Docs • Try it Now • Tutorials • Examples • Blog • Commun

In-depth EDA (target analysis, comparison, feature analysis, correlation) in two lines of code! Sweetviz is an open-source Python library that generat

Introduction The facets project contains two visualizations for understanding and analyzing machine learning datasets: Facets Overview and Facets Dive

AUDIOMATE Audiomate is a library for easy access to audio datasets. It provides the datastructures for accessing/loading different datasets in a gener

UA-GEC: Grammatical Error Correction and Fluency Corpus for the Ukrainian Language This repository contains UA-GEC data and an accompanying Python lib

NeuralQA: A Usable Library for (Extractive) Question Answering on Large Datasets with BERT Still in alpha, lots of changes anticipated. View demo on n

ParlAI (pronounced “par-lay”) is a python framework for sharing, training and testing dialogue models, from open-domain chitchat, to task-oriented dia

ivis Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets. Ivis

The open-source tool for building high-quality datasets and computer vision models. Website • Docs • Try it Now • Tutorials • Examples • Blog • Commun

In-depth EDA (target analysis, comparison, feature analysis, correlation) in two lines of code! Sweetviz is an open-source Python library that generat

Introduction The facets project contains two visualizations for understanding and analyzing machine learning datasets: Facets Overview and Facets Dive

lazynlp A straightforward library that allows you to crawl, clean up, and deduplicate webpages to create massive monolingual datasets. Using this libr

Pytorch Medical Segmentation Read Chinese Introduction：Here！ Recent Updates 2021.1.8 The train and test codes are released. 2021.2.6 A bug in dice was

OpenViDial This repo contains downloading instructions for the OpenViDial dataset in 《OpenViDial: A Large-Scale, Open-Domain Dialogue Dataset with Vis

Context Matters: Graph-based Self-supervised Representation Learning for Medical Images Official PyTorch implementation for paper Context Matters: Gra

Stock Analysis Engine Build and tune investment algorithms for use with artificial intelligence (deep neural networks) with a distributed stack for ru

Tablib: format-agnostic tabular dataset library _____ ______ ___________ ______ __ /_______ ____ /_ ___ /___(_)___ /_ _ __/_ __ `/__ _

Implicit Fast Python Collaborative Filtering for Implicit Datasets. This project provides fast Python implementations of several different popular rec

Pretrained SOTA Deep Learning models, callbacks and more for research and production with PyTorch Lightning and PyTorch Website • Installation • Main

Documentation: https://raamana.github.io/neuropredict/ News As of v0.6, neuropredict now supports regression applications i.e. predicting continuous t

nilearn Nilearn enables approachable and versatile analyses of brain volumes. It provides statistical and machine-learning tools, with instructive doc

Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund

Overview AkShare requires Python(64 bit) 3.7 or greater, aims to make fetch financial data as convenient as possible. Write less, get more! Documentat