Python Medical-imaging-datasets Resources

A minimal yet resourceful implementation of diffusion models (along with pretrained models + synthetic images for nine datasets)

Python pandas Q&A video series Read about the series, and view all of the videos on one page: Easier data analysis in Python with pandas. Jupyter Note

CrowdCurio Time Series Annotator Library The CrowdCurio Time Series Annotation Library implements classification tasks for time series. Features Suppo

Medical Appointments No-shows Why do 20% of patients miss their scheduled appointments? A person makes a doctor appointment, receives all the instruct

ALLINONE-Det ALLINONE-Det is a general and strong 3D object detection codebase built on OpenPCDet, which supports more methods, datasets and tools (de

The CodeSearchNet challenge has been concluded We would like to thank all participants for their submissions and we hope that this challenge provided

Customer Service Requests Analysis Project 1 DESCRIPTION Background of Problem Statement : NYC 311's mission is to provide the public with quick and e

Chinese Medical Entity Recognition Based on BERT+Bi-LSTM+CRF Step 1 I share the dataset on my google drive, please download the whole 'CCKS_2019_Task1

ehtim (eht-imaging) Python modules for simulating and manipulating VLBI data and producing images with regularized maximum likelihood methods. This ve

Real-time face detection and emotion/gender classification using fer2013/imdb datasets with a keras CNN model and openCV.

What is this This tool given a COCO annotations file and COCO predictions file will let you explore your dataset, visualize results and calculate impo

Auto Vaidya An open source solution for creating end-end web app for employing the power of deep learning in various clinical scenarios like implant d

Benchmarking-Chinese-Text-Recognition This repository contains datasets and baselines for benchmarking Chinese text recognition. Please see the corres

BlosSOM 🌼 BlosSOM is a graphical environment for running semi-supervised dimensionality reduction with EmbedSOM. You can use it to explore multidimen

Code-and-Dataset-for-CapSal This project provides the code and datasets for 'CapSal: Leveraging Captioning to Boost Semantics for Salient Object Detec

Vision Transformer for Small-Size Datasets Seung Hoon Lee and Seunghyun Lee and Byung Cheol Song | Paper Inha University Abstract Recently, the Vision

Medical-Insurance-Cost-Prediction-using-Machine-learning - Here in this project, I will use regression analysis to predict medical insurance cost for people in different regions, and based on several aspects like : Smoking, Number of children, BMI...etc.

styleGAN2-ADA-training-jupyter Training custom datasets in styleGAN2-ADA on Jupyter Official StyleGAN2-ADA by NIVIDIA Paper Training Generative Advers

High resolution disentanglement datasets This repository contains the Falcor3D and Isaac3D datasets, which present a state-of-the-art challenge for co

pysero pysero enables serological measurements with multiplexed and standard ELISA assays. The project automates estimation of antibody titers from da

Finding data is one thing. Getting it ready for analysis is another. Acquiring, cleaning, standardizing and importing publicly available data is time

Python script that analyses the given datasets and comes up with the best polynomial regression representation with the smallest polynomial degree possible, to be the most reliable with the least complexity possible

Notebooks A NASA MEaSUREs project to provide automated, low latency, global glacier flow and elevation change datasets This repository provides tools

Synthetic dataset rendering Framework for producing the synthetic datasets used in: How Useful is Self-Supervised Pretraining for Visual Tasks? Alejan

Contrastive learning of global and local features for medical image segmentation with limited annotations The code is for the article "Contrastive lea

Official repository of the paper Learning to Regress 3D Face Shape and Expression from an Image without 3D Supervision

tedana: TE Dependent ANAlysis TE-dependent analysis (tedana) is a Python library for denoising multi-echo functional magnetic resonance imaging (fMRI)

Medical-Image-Triage-and-Classification-System-Based-on-COVID-19-CT-and-X-ray-Sc

Hub is a dataset format with a simple API for creating, storing, and collaborating on AI datasets of any size. The hub data layout enables rapid transformations and streaming of data while training models at scale. Hub is used by Google, Waymo, Red Cross, Oxford University, and Omdena.

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

softcatala-web-dataset This repository contains Sofcatalà web site content (articles and programs descriptions). Dataset are available in the dataset

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

xmldataset: simple xml parsing 🗃️ XML Dataset: simple xml parsing Documentation: https://xmldataset.readthedocs.io A Python library that simplifies t

FFA-IR The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark." The framework is inheri

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

ckanext-sitesearch Index different CKAN entities in Solr, not just datasets Requirements This extension requires CKAN 2.9 or higher and Python 3 Featu

546 Final Project: Masked Autoencoder Haoran Tang, Qirui Wu 1. Training To train the network, please run mae_pretraining.py. Please modify folder path

Keyhole Imaging Code & Dataset Code associated with the paper "Keyhole Imaging: Non-Line-of-Sight Imaging and Tracking of Moving Objects Along a Singl

doccano doccano is an open source text annotation tool for humans. It provides annotation features for text classification, sequence labeling and sequ

AKShare is an elegant and simple financial data interface library for Python, built for human beings

Named-Entity-Recognition-NER-Papers by Pengfei Liu, Jinlan Fu and other contributors. An elaborate and exhaustive paper list for Named Entity Recognit

MISSFormer Code for paper "MISSFormer: An Effective Medical Image Segmentation Transformer". Please read our preprint at the following link: paper_add

speech-nlp-datasets Contains links to publicly available datasets for modeling various health outcomes using speech and language. Speech-based Corpora

CPPE - 5 CPPE - 5 (Medical Personal Protective Equipment) is a new challenging dataset with the goal to allow the study of subordinate categorization

🏆 Most Common Words Multilingual 5000 most frequent words in 109 languages. Uses wordfrequency.info as a source. 🔗 License source code license data

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet). [New] Note that all the emails about the download permission o

demir.ai Dataset Operations With this application, you can have the empty values (nan/null) deleted or filled before giving your dataset to machine le

NHDRRNet-PyTorch This is the PyTorch implementation of Deep HDR Imaging via A Non-Local Network (TIP 2020). 0. Differences between Original Paper and

MT-UNet Update 2021/11/19 Thank you for your interest in our work. We have uploaded the code of our MTUNet to help peers conduct further research on i

Splinter This repository contains the code, models and datasets discussed in our paper "Few-Shot Question Answering by Pretraining Span Selection", to

Tensor2Tensor Tensor2Tensor, or T2T for short, is a library of deep learning models and datasets designed to make deep learning more accessible and ac

TransLink Spatial Data What: TransLink is the statutory public transit authority for the Metro Vancouver region. This GitHub repository is a collectio

Aspect-Category-Opinion-Sentiment (ACOS) Quadruple Extraction This repo contains the data sets and source code of our paper: Aspect-Category-Opinion-S

KGQA Datasets Brief Introduction This repository is a collection of existing KGQA datasets in the form of the huggingface datasets library, aiming to

Hypernet-Ensemble Learning of Segmentation Probability for Medical Image Segmentation with Ambiguous Labels The implementation of Hypernet-Ensemble Le

Read and write TIFF files Tifffile is a Python library to store numpy arrays in TIFF (Tagged Image File Format) files, and read image and metadata fro

AHDRNet-PyTorch This is the PyTorch implementation of Attention-guided Network for Ghost-free High Dynamic Range Imaging (CVPR 2019). The official cod

cleanX CleanX is an open source python library for exploring, cleaning and augmenting large datasets of X-rays, or certain other types of radiological

HEART DISEASE AI DATATHON 2021 [Eng] / [Kor] #English This is an AI diagnosis modeling contest that uses the heart disease echocardiography and electr

Easy Language Model Pretraining leveraging Huggingface's Transformers and Datasets What is LASSL • How to Use What is LASSL LASSL은 LAnguage Semi-Super

An Open Source Project from the Data to AI Lab, at MIT Website: https://sdv.dev Documentation: https://sdv.dev/SDV User Guides Developer Guides Github

Larch: Data Analysis Tools for X-ray Spectroscopy and More Documentation: http://xraypy.github.io/xraylarch Code: http://github.com/xraypy/xraylarch L

Template for Data Science Project This repo aims to give a robust starting point to any Data Science related project. It contains readymade tools setu

Deep Learning Dataset Maker Deep Learning Datasets Maker is a QGIS plugin to make datasets creation easier for raster and vector data. How to use Down

Robust Place Recognition using an Imaging Lidar A place recognition package using high-resolution imaging lidar. For best performance, a lidar equippe

Learning Imbalanced Datasets with Label-Distribution-Aware Margin Loss Kaidi Cao, Colin Wei, Adrien Gaidon, Nikos Arechiga, Tengyu Ma This is the offi

Scene Text Recognition Recommendations Everythin about Scene Text Recognition SOTA • Papers • Datasets • Code Contents 1. Papers 2. Datasets 2.1 Synth

Sequential Recommendation Datasets This repository collects some commonly used sequential recommendation datasets in recent research papers and provid

This repository contains data and code for our EMNLP 2021 paper Models and Datasets for Cross-Lingual Summarisation. Please contact me at [email protected]

Simulation of moving particles under microscopic imaging Install scipy numpy scikit-image tiffile Run python simulation.py Read result https://imagej

Scripts for QA and trigger preprocessing of NIMH HV Protocol Install pip install git+https://github.com/nih-megcore/hv_proc Usage hv_process.py will

Simple pipeline for experimenting with radiomics features Installation git clone https://github.com/piotrekwoznicki/ClassyRadiomics.git cd classrad pi

U-Net Brain Tumor Segmentation 🚀 ：Feb 2019 the data processing implementation in this repo is not the fastest way (code need update, contribution is

Implementation of the ivis algorithm as described in the paper Structure-preserving visualisation of high dimensional single-cell datasets.

Simple PyTorch Implementation of "Grokking" Implementation of Grokking: Generalization Beyond Overfitting on Small Algorithmic Datasets Usage Running

Grouped SSD (GSSD) for liver lesion detection from multi-phase CT Note: the MICCAI 2018 paper only covers the multi-phase lesion detection part of thi

AI Fairness 360 (AIF360) The AI Fairness 360 toolkit is an extensible open-source library containg techniques developed by the research community to h

Joint t-sne This is the implementation for paper Joint t-SNE for Comparable Projections of Multiple High-Dimensional Datasets. abstract: We present Jo

Imaging Transcriptomics Imaging transcriptomics is a methodology that allows to identify patterns of correlation between gene expression and some prop

Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation This repository contains the Pytorch implementation of the proposed

farabio is a minimal PyTorch toolkit for out-of-the-box deep learning support in biomedical imaging. For further information, see Wikis and Docs.

Mars tiler Mars Tiler is a prototype web application that serves tiles from cloud-optimized GeoTIFFs, with an emphasis on supporting planetary dataset

K-BERT Sorce code and datasets for "K-BERT: Enabling Language Representation with Knowledge Graph", which is implemented based on the UER framework. R

PLUR (Programming-Language Understanding and Repair) is a collection of source code datasets suitable for graph-based machine learning. We provide scripts for downloading, processing, and loading the datasets. This is done by offering a unified API and data structures for all datasets.

Re-implementation of the paper 'Grokking: Generalization beyond overfitting on small algorithmic datasets' Paper Original paper can be found here Data

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

doccano doccano is an open source text annotation tool for humans. It provides annotation features for text classification, sequence labeling and sequ

DT-Fixup Optimizing Deeper Transformers on Small Datasets Paper published in ACL 2021: arXiv Detailed instructions to replicate our results in the pap

Website • Docs • Twitter • Join Slack Community What is Label Studio? Label Studio is an open source data labeling tool. It lets you label data types

ContIG: Self-supervised Multimodal Contrastive Learning for Medical Imaging with Genetics This is the code implementation of the paper "ContIG: Self-s

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Data Consistency for Magnetic Resonance Imaging Data Consistency (DC) is crucial for generalization in multi-modal MRI data and robustness in detectin

DALLE tools DALLE-tools is a github repository with useful tools to categorize, annotate or check the sanity of your datasets. Installation Just clone

vision Datasets, Transforms and Models specific to Computer Vision Installation First install the nightly version of OneFlow python3 -m pip install on

VT-UNet This repo contains the supported pytorch code and configuration files to reproduce 3D medical image segmentaion results of VT-UNet. Environmen

ClimART - A Benchmark Dataset for Emulating Atmospheric Radiative Transfer in Weather and Climate Models Official PyTorch Implementation Using deep le

Few-shot Deep HDR Deghosting This repository contains code and pretrained models for our paper: Self-Gated Memory Recurrent Network for Efficient Scal

CodedCam Coded Illumination for Improved Lensless Imaging Paper | Supplementary results | Data and Code are available. Coded illumination for improved

Traditional Chinese Text Recognition Dataset: Synthetic Dataset and Labeled Data Authors: Yi-Chang Chen, Yu-Chuan Chang, Yen-Cheng Chang and Yi-Ren Ye