Python Medical-imaging-datasets Resources

Experimenting with computer vision techniques to generate annotated image datasets from gameplay recordings automatically. The collected data will then be used to train a deep neural network that can detect enemy player models in real time, during gameplay. Finally, a virtual input device will adjust the player's crosshair based on live detections for greater accuracy.

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The repository contains the implementations for Hyperspectral Image Classification -- Traditional to Deep Models: A Survey for Future Prospects. Model

Mask_Detection_System A system used to detect whether a person is wearing a medical mask or not. To open the program, please follow these steps: Make

An Open Source Project from the Data to AI Lab, at MIT Metrics for Synthetic Data Generation Projects Website: https://sdv.dev Documentation: https://

NVTabular is a feature engineering and preprocessing library for tabular data designed to quickly and easily manipulate terabyte scale datasets used to train deep learning based recommender systems.

VGGVox models for speaker identification and verification This directory contains code to import and evaluate the speaker identification and verificat

R interface to fastai The fastai package provides R wrappers to fastai. The fastai library simplifies training fast and accurate neural nets using mod

FAIMED 3D use fastai to quickly train fully three-dimensional models on radiological data Classification from faimed3d.all import * Load data in vari

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

Impyute is a library of missing data imputation algorithms. This library was designed to be super lightweight, here's a sneak peak at what impyute can do.

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

largeVis This is an implementation of the largeVis algorithm described in (https://arxiv.org/abs/1602.00370). It also incorporates: A very fast algori

DiLBERT Repo for the paper "DiLBERT: Cheap Embeddings for Disease Related Medical NLP" Pretrained Model The pretrained model presented in the paper is

slue-toolkit We introduce Spoken Language Understanding Evaluation (SLUE) benchmark. This toolkit provides codes to download and pre-process the SLUE

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

Deep Learning with PyTorch made easy 🚀 ! Carefree? carefree-learn aims to provide CAREFREE usages for both users and developers. It also provides a c

GGB Color Space This package is implementation of GGB color space from Development of a Robust Algorithm for Detection of Nuclei and Classification of

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation This repository contains the implementat

AP-10K: A Benchmark for Animal Pose Estimation in the Wild Introduction | Updates | Overview | Download | Training Code | Key Questions | License Intr

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me

Created two information products for GameStop. Using Python, wrangled and unpivoted datasets, and created Tableau dashboards.

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

ShallowSeismicImaging Tools to imaging the shallow seismic structure, above 10 km, based on the ZH ratio measured from the ambient seismic noise, and

Neurons Dataset API - The official dataloader and visualization tools for Neurons Datasets. Introduction We propose our dataloader API for loading and

UTNet (Accepted at MICCAI 2021) Official implementation of UTNet: A Hybrid Transformer Architecture for Medical Image Segmentation Introduction Transf

[arXiv] The main motivation of the SHIFT15M project is to provide a dataset that contains natural dataset shifts collected from a web service IQON, wh

Exposure: A White-Box Photo Post-Processing Framework ACM Transactions on Graphics (presented at SIGGRAPH 2018) Yuanming Hu1,2, Hao He1,2, Chenxi Xu1,

AOS: Airborne Optical Sectioning Airborne Optical Sectioning (AOS) is a wide synthetic-aperture imaging technique that employs manned or unmanned airc

NoCodeSeg: Deep segmentation made easy! This is the official repository for the manuscript "Code-free development and deployment of deep segmentation

Interactive Web App with Streamlit and Scikit-learn that applies different Classification algorithms to popular datasets Datasets Used: Iris dataset,

Spiking neural network (SNN), compared with depth neural network (DNN), has faster processing speed, lower energy consumption and more biological interpretability, which is expected to approach Strong AI.

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

Implementation for paper LadderNet: Multi-path networks based on U-Net for medical image segmentation This implementation is based on orobix implement

Attention Gated Networks (Image Classification & Segmentation) Pytorch implementation of attention gates used in U-Net and VGG-16 models. The framewor

Semantic Segmentation in PyTorch Semantic Segmentation in PyTorch Requirements Main Features Models Datasets Losses Learning rate schedulers Data augm

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

Sparse deconvolution Python v0.3.0 Official Python implementation of the 'Sparse deconvolution', and the CPU (NumPy) and GPU (CuPy) calculation backen

Python dataset creator to construct datasets composed of OpenFace extracted features and Shimmer3 GSR+ Sensor datas

SkeletonNet This repository constains the codes and ShapeNetV1-Surface-Skeleton,ShapNetV1-SkeletalVolume and 2d image datasets ShapeNetRendering. Plea

ACAV100M: Automatic Curation of Large-Scale Datasets for Audio-Visual Video Representation Learning This repository contains the code for our ICCV 202

ObjTables: Tools for creating and reusing high-quality spreadsheets ObjTables is a toolkit which makes it easy to use spreadsheets (e.g., XLSX workboo

NLOS-OT Official implementation of NLOS-OT: Passive Non-Line-of-Sight Imaging Using Optimal Transport (IEEE TIP, accepted) Description In this reposit

Replication Package for "An Empirical Study of the Effectiveness of an Ensemble of Stand-alone Sentiment Detection Tools for Software Engineering Data

AutomaticUSnavigation Investigating automatic navigation towards standard US views integrating MARL with the virtual US environment developed in CT2US

Variance-Aware-MT-Test-Sets Variance-Aware Machine Translation Test Sets License See LICENSE. We follow the data licensing plan as the same as the WMT

Understanding the Effects of Datasets Characteristics on Offline Reinforcement Learning Kajetan Schweighofer1, Markus Hofmarcher1, Marius-Constantin D

JaMIE: a Japanese Medical Information Extraction toolkit Joint Japanese Medical Problem, Modality and Relation Recognition The Train/Test phrases requ

CS4044D Machine Learning Assignment 1 By Dev Sony, B180297CS The question, report and source code can be found here. Github Repo Solution 1 Based on t

This is a paired face to comics dataset, which can be used to train pix2pix or similar networks.

Fast Symbolic Regression Symbolic Regression is a non-linear, non-parametric Machine Learning method capable of modeling complex data sets. fastsr aim

Equivariant Imaging: Learning Beyond the Range Space Equivariant Imaging: Learning Beyond the Range Space Dongdong Chen, Julián Tachella, Mike E. Davi

Introduction Datasets and source code for our paper Webly Supervised Fine-Grained Recognition: Benchmark Datasets and An Approach Datasets: WebFG-496

Recurrent Mask Refinement for Few-Shot Medical Image Segmentation Steps Install any missing packages using pip or conda Preprocess each dataset using

Semisupervised Multitask Learning This repository is an unofficial and slightly modified implementation of UM-Adapt[1] using PyTorch. This code primar

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

fly2p Tools for analyzing two-photon (2p) imaging data collected with Vidrio Scanimage software and micromanger. Loading scanimage data relies on scan

PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format.

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region. This repository provides the codebase and dataset for our work WORD: Revisiting Or

RLDS RLDS stands for Reinforcement Learning Datasets and it is an ecosystem of tools to store, retrieve and manipulate episodic data in the context of

[NeurIPS 2021] Well-tuned Simple Nets Excel on Tabular Datasets Introduction This repo contains the source code accompanying the paper: Well-tuned Sim

uber-pickups-analysis Data Source: https://www.kaggle.com/fivethirtyeight/uber-pickups-in-new-york-city Information about data set The dataset contain

ActiveLearningDemo How to run step one put the dataset folder and use command below to split the dataset to the required structure run utils.py For ea

stsb_multi_mt_en STS Benchmark comprises a selection of the English datasets used in the STS tasks organized in the context of SemEval between 2012 an

DistMIS Distributing Deep Learning Hyperparameter Tuning for 3D Medical Image Segmentation. DistriMIS Distributing Deep Learning Hyperparameter Tuning

MedAI: Transparency in Medical Image Segmentation What is this repo This repo contains the code and experiments that are implemented to contribute in

bayesmedaug: Bayesian Optimization Library for Medical Image Segmentation. bayesmedaug optimizes your data augmentation hyperparameters for medical im

SparkDataset Provides instant access to many datasets right from Pyspark (in Spark DataFrame structure). Drop a star if you like the project. 😃 Motiv

uber-pickups-analysis Data Source: https://www.kaggle.com/fivethirtyeight/uber-pickups-in-new-york-city Information about data set The dataset contain

Neural Nano-Optics for High-quality Thin Lens Imaging Project Page | Paper | Data Ethan Tseng, Shane Colburn, James Whitehead, Luocheng Huang, Seung-H

Non-Imaging Transient Reconstruction And TEmporal Search (NITRATES) This repo contains the full NITRATES pipeline for maximum likelihood-driven discov

How to Leverage Multimodal EHR Data for Better Medical Predictions? This repository contains the code of the paper: How to Leverage Multimodal EHR Dat

Pytorch Classification A general, feasible and extensible framework for 2D image classification. Features Easy to configure (model, hyperparameters) T

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

Synthetic-Data-Replica-for-Healthcare Description What is this? A tailored hands-on tutorial showing how to use Python to create synthetic data replic

Video Class Agnostic Segmentation [Method Paper] [Benchmark Paper] [Project] [Demo] Official Datasets and Implementation from our Paper "Video Class A

ngEHTexplorer An interactive tool with which to explore the possible imaging performance of candidate ngEHT architectures. Welcome! ngEHTexplorer is a

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

HW 2: Visualizing interesting datasets Check out the project instructions here! Mean Earnings per Hour for Males and Females My first graph uses data

Asterisk is a framework to generate high-quality training datasets at scale

A dataset handling library for computer vision datasets in LOST-fromat

Med Phys Scripts These are scripts that I, the medical physics assistant at Cookeville Regional Medical Center, wrote for use in our radiation therapy

HM02: Visualizing Interesting Datasets This is a homework assignment for CSCI 40 class at Claremont McKenna College. Go to the project page to learn m

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

🎵 A repository for manually annotating files to create labeled acoustic datasets for machine learning.

Official codes for "Efficient Training of Visual Transformers with Small Datasets", NerIPS 2021.

Physion: Evaluating Physical Prediction from Vision in Humans and Machines This repo contains code and data to reproduce the results in our paper, Phy

github_project This is a project for medical image segmentation. This project includes common medical image segmentation models such as U-net, FCN, De

rawbuilder an elegant datasets factory Free software: MIT license Documentation: https://rawbuilder.readthedocs.io. Features Schema oriented datasets

Blockchain-based Medical Records 📄 Abstract Blockchain has the ability to keep an incorruptible, decentralized, and transparent log of all patient da

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

napkinXC napkinXC is an extremely simple and fast library for extreme multi-class and multi-label classification, that focus of implementing various m

KnowPrompt Code and datasets for our paper "KnowPrompt: Knowledge-aware Prompt-tuning with Synergistic Optimization for Relation Extraction" Requireme

Distribution-Balanced Loss [Paper] The implementation of our paper Distribution-Balanced Loss for Multi-Label Classification in Long-Tailed Datasets (

QuakeLabeler Quake Labeler was born from the need for seismologists and developers who are not AI specialists to easily, quickly, and independently bu

starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics