Python Single-cell-analysis Resources

TunBERT is the first release of a pre-trained BERT model for the Tunisian dialect using a Tunisian Common-Crawl-based dataset. TunBERT was applied to three NLP downstream tasks: Sentiment Analysis (SA), Tunisian Dialect Identification (TDI) and Reading Comprehension Question-Answering (RCQA)

🧪📈 🐍. The purpose of the panel-chemistry project is to make it really easy for you to do DATA ANALYSIS and build powerful DATA AND VIZ APPLICATIONS within the domain of Chemistry using using Python and HoloViz Panel.

spafe aims to simplify features extractions from mono audio files. The library can extract of the following features: BFCC, LFCC, LPC, LPCC, MFCC, IMFCC, MSRCC, NGCC, PNCC, PSRCC, PLP, RPLP, Frequency-stats etc. It also provides various filterbank modules (Mel, Bark and Gammatone filterbanks) and other spectral statistics.

🐸 Identify anything. pyWhat easily lets you identify emails, IP addresses, and more. Feed it a .pcap file or some text and it'll tell you what it is! 🧙‍♀️

Kats, a kit to analyze time series data, a lightweight, easy-to-use, generalizable, and extendable framework to perform time series analysis, from understanding the key statistics and characteristics, detecting change points and anomalies, to forecasting future trends.

Segmentation and Identification of Vertebrae in CT Scans using CNN, k-means Clustering and k-NN If you use this code for your research, please cite ou

The MDAkit for membrane curvature analysis is part of the Google Summer of Code program and it is linked to a Code of Conduct.

NBEATSx: Neural basis expansion analysis with exogenous variables We extend the NBEATS model to incorporate exogenous factors. The resulting method, c

MonoRec: Semi-Supervised Dense Reconstruction in Dynamic Environments from a Single Moving Camera

kaggle-hpa-2021-7th-place-solution Code for 7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle. A description of the met

SolvationAnalysis The macroscopic behavior of a liquid is determined by its microscopic structure. For ionic systems, like batteries and many enzymes,

SinIR (Official Implementation) Requirements To install requirements: pip install -r requirements.txt We used Python 3.7.4 and f-strings which are in

TRICE: a task-agnostic transferring framework for multi-source sequence generation This is the source code of our work Transfer Learning for Sequence

TextCortex - HemingwAI Generate product descriptions, blogs, ads and more using GPT architecture with a single request to TextCortex API a.k.a Hemingw

deep_autoviml Build keras pipelines and models in a single line of code! Table of Contents Motivation How it works Technology Install Usage API Image

SingleClassRL Implementation of weak single object segmentation from paper "Regularized Loss for Weakly Supervised Single Class Semantic Segmentation"

Aerial Depth Completion This work is described in the letter "Aerial Single-View Depth Completion with Image-Guided Uncertainty Estimation", by Lucas

MOT Tracked object bounding box association (CenterTrack++) New association method based on CenterTrack. Two new branches (Tracked Size and IOU) are a

Sparsity Probe: Analysis tool for Deep Learning Models This repository is a limited implementation of Sparsity Probe: Analysis tool for Deep Learning

InsightFace: 2D and 3D Face Analysis Project on MXNet and PyTorch

Shortcut-Maker It is a tool that can be set to run any tool with a single command Coded by Dave Smith(Owner of Sl Cyber Warriors) Command list 👇 pkg

ProcrustEs-KGE Paddle implementation for Highly Efficient Knowledge Graph Embedding Learning with Orthogonal Procrustes Analysis 🙈 A more detailed re

wp-automation Info: this is a simple automation software that sends WhatsApp message to single or multiple users. Key feature: -Sends message to multi

Sentance Parser Executing the Program Make sure Python 3.6+ is installed. Install requirements $ pip install requirements.txt Run the program:

SYMPAIS: Symbolic Parallel Adaptive Importance Sampling for Probabilistic Program Analysis Overview | Installation | Documentation | Examples | Notebo

🔬 A curated list of awesome machine learning strategies & tools in financial market.

APKLeaks - Scanning APK file for URIs, endpoints & secrets.

Interpretation of T cell states using reference single-cell atlases ProjecTILs is a computational method to project scRNA-seq data into reference sing

Solve Volterra and Fredholm integral equations This Python package estimates Volterra and Fredholm integral equations using known techniques. Installa

Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

Stox A Module to predict the "close price" for the next day and give "technical analysis". It uses a Neural Network and the LSTM algorithm to predict

Machine Learning Visualization Tools A single Python file with some tools for visualizing machine learning in the terminal. This demo is composed of t

MoveNet Single Pose tracking on DepthAI Running Google MoveNet Single Pose models on DepthAI hardware (OAK-1, OAK-D,...). A convolutional neural netwo

pyprobables is a pure-python library for probabilistic data structures. The goal is to provide the developer with a pure-python implementation of common probabilistic data-structures to use in their work.

A Python package for geospatial analysis and interactive mapping with minimal coding in a Jupyter environment

SiamMOT: Siamese Multi-Object Tracking

MoveNet Single Pose tracking on OpenVINO Running Google MoveNet Single Pose models on OpenVINO. A convolutional neural network model that runs on RGB

Image Crop Analysis This is a repo for the code used for reproducing our Image Crop Analysis paper as shared on our blog post. If you plan to use this

Create single line SVG illustrations from your pictures

Create single line SVG illustrations from your pictures

Learning to Reconstruct 3D Manhattan Wireframes From a Single Image This repository contains the PyTorch implementation of the paper: Yichao Zhou, Hao

RoBERTaABSA This repo contains the code for NAACL 2021 paper titled Does syntax matter? A strong baseline for Aspect-based Sentiment Analysis with RoB

Time series Timeseries Deep Learning Pytorch fastai - State-of-the-art Deep Learning with Time Series and Sequences in Pytorch / fastai

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Crypto_analysis Discription: simple streamlit(screener) app to make MMA and OSC analysis for cyrpto-currenices, and gives resaults for which coins are

This repo includes the Pytorch-Geometric implementation of a series of Graph Neural Network (GNN) based fake news detection models. All GNN models are implemented and evaluated under the User Preference-aware Fake News Detection (UPFD) framework. The fake news detection problem is instantiated as a graph classification task under the UPFD framework.

Self-Supervised Music Analysis Self-Supervised Contrastive Learning of Music Spectrograms Dataset Songs on the Billboard Year End Hot 100 were collect

Esparto is a simple HTML and PDF document generator for Python. Its primary use is for generating shareable single page reports with content from popular analytics and data science libraries.

python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu

30 Days Of Machine Learning Using Pytorch Objective of the repository is to learn and build machine learning models using Pytorch. List of Algorithms

MevonAI - Speech Emotion Recognition

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

SentiLARE: Sentiment-Aware Language Representation Learning with Linguistic Knowledge Introduction SentiLARE is a sentiment-aware pre-trained language

ArviZ (pronounced "AR-vees") is a Python package for exploratory analysis of Bayesian models. Includes functions for posterior analysis, data storage, model checking, comparison and diagnostics

SARS-CoV-2 processing requests Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide. Prerequisites This autom

Single-view robot pose and joint angle estimation via render & compare Yann Labbé, Justin Carpentier, Mathieu Aubry, Josef Sivic CVPR: Conference on C

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

ImageNet-21K Pretraining for the Masses Paper | Pretrained models Official PyTorch Implementation Tal Ridnik, Emanuel Ben-Baruch, Asaf Noy, Lihi Zelni

OCTIS : Optimizing and Comparing Topic Models is Simple! OCTIS (Optimizing and Comparing Topic models Is Simple) aims at training, analyzing and compa

ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis [arxiv|pdf|v

Implicit3DUnderstanding (Im3D) [Project Page] Holistic 3D Scene Understanding from a Single Image with Implicit Representation Cheng Zhang, Zhaopeng C

TTS is a library for advanced Text-to-Speech generation. It's built on the latest research, was designed to achieve the best trade-off among ease-of-training, speed and quality. TTS comes with pretrained models, tools for measuring dataset quality and already used in 20+ languages for products and research projects.

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

Py-FEAT is a suite for facial expressions (FEX) research written in Python. This package includes tools to detect faces, extract emotional facial expressions (e.g., happiness, sadness, anger), facial muscle movements (e.g., action units), and facial landmarks, from videos and images of faces, as well as methods to preprocess, analyze, and visualize FEX data.

This open source Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning.

Automated Penetration Testing Framework

bulbea "Deep Learning based Python Library for Stock Market Prediction and Modelling." Table of Contents Installation Usage Documentation Dependencies

geoplot: geospatial data visualization geoplot is a high-level Python geospatial plotting library. It's an extension to cartopy and matplotlib which m

🌍 xarray-spatial: Raster-Based Spatial Analysis in Python 📍 Fast, Accurate Python library for Raster Operations ⚡ Extensible with Numba ⏩ Scalable w

MovingPandas MovingPandas implements a Trajectory class and corresponding methods based on GeoPandas. Visit movingpandas.org for details! You can run

Welcome to the lidar package lidar is Python package for delineating the nested hierarchy of surface depressions in digital elevation models (DEMs). I

thunder scalable analysis of image and time series analysis in python Thunder is an ecosystem of tools for the analysis of image and time series data

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

Pandana Pandana is a Python library for network analysis that uses contraction hierarchies to calculate super-fast travel accessibility metrics and sh

OSMnx OSMnx is a Python package that lets you download geospatial data from OpenStreetMap and model, project, visualize, and analyze real-world street

Lifelong Machine Learning with Deep Streaming Linear Discriminant Analysis This is a PyTorch implementation of the Deep Streaming Linear Discriminant

Python script that analyses news headline or body sentiment and returns the overall media sentiment of any given coin. It can take multiple coins an

Single-Image-Reflection-Removal-Beyond-Linearity Paper Single Image Reflection Removal Beyond Linearity. Qiang Wen, Yinjie Tan, Jing Qin, Wenxi Liu, G

A Python Library for Document Layout Understanding

Apache Superset is a Data Visualization and Data Exploration Platform

CoReNet CoReNet is a technique for joint multi-object 3D reconstruction from a single RGB image. It produces coherent reconstructions, where all objec

Ratio Image Based Rendering for Deep Single-Image Portrait Relighting [Project Page] This is part of the Deep Portrait Relighting project. If you find

StyleSpace Analysis: Disentangled Controls for StyleGAN Image Generation Demo video: CVPR 2021 Oral: Single Channel Manipulation: Localized or attribu

NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

Neural-Semi-supervised-Learning-for-Text-Classification-Under-Large-Scale-Pretraining Code, models and Datasets for《Neural Semi-supervised Learning fo

FrankMocap pursues an easy-to-use single view 3D motion capture system developed by Facebook AI Research (FAIR). FrankMocap provides state-of-the-art 3D pose estimation outputs for body, hand, and body+hands in a single system. The core objective of FrankMocap is to democratize the 3D human pose estimation technology, enabling anyone (researchers, engineers, developers, artists, and others) can easily obtain 3D motion capture outputs from videos and images.

wsss-analysis The code of: A Comprehensive Analysis of Weakly-Supervised Semantic Segmentation in Different Image Domains, arXiv pre-print 2019 paper.

Flenser Have you ever been handed a dataset you've never seen before? Flenser is a simple, minimal, automated exploratory data analysis tool. It runs

PMTiles PMTiles is a single-file archive format for tiled data. A PMTiles archive can be hosted on a commodity storage platform such as S3, and enable

Socorro Socorro is a Mozilla-centric ingestion pipeline and analysis tools for crash reports using the Breakpad libraries. Support This is a Mozilla-s

Guide: Finetune GPT2-XL (1.5 Billion Parameters) and GPT-NEO (2.7 Billion Parameters) on a single 16 GB VRAM V100 Google Cloud instance with Huggingfa

Sensitivity Analysis Library (SALib) Python implementations of commonly used sensitivity analysis methods. Useful in systems modeling to calculate the

TensorFlow Probability TensorFlow Probability is a library for probabilistic reasoning and statistical analysis in TensorFlow. As part of the TensorFl

dabl The data analysis baseline library. "Mr Sanchez, are you a data scientist?" "I dabl, Mr president." Find more information on the website. State o

Scikit-TDA is a home for Topological Data Analysis Python libraries intended for non-topologists. This project aims to provide a curated library of TD

Mlxtend (machine learning extensions) is a Python library of useful tools for the day-to-day data science tasks. Sebastian Raschka 2014-2021 Links Doc

imbalanced-learn imbalanced-learn is a python package offering a number of re-sampling techniques commonly used in datasets showing strong between-cla