Python Single-cell-analysis Resources

japanese-ebook-analysis This aim of this project is to make analysing the contents of a japanese ebook easy and streamline the process for non-technic

dumpulator Note: This is a work-in-progress prototype, please treat it as such. An easy-to-use library for emulating code in minidump files. Example T

CleanRL (Clean Implementation of RL Algorithms) CleanRL is a Deep Reinforcement Learning library that provides high-quality single-file implementation

TraSw for FairMOT A Single-Target Attack example (Attack ID: 19; Screener ID: 24): Fig.1 Original Fig.2 Attacked By perturbing only two frames in this

Restormer: Efficient Transformer for High-Resolution Image Restoration Syed Waqas Zamir, Aditya Arora, Salman Khan, Munawar Hayat, Fahad Shahbaz Khan,

Minimal Body A very simple baseline to estimate 2D & 3D SMPL-compatible keypoints from a single color image. The model file is only 51.2 MB and runs a

A multi-platform GUI for bit-based analysis, processing, and visualization

Render tokei's output to interactive sunburst chart.

Long Short-Term Transformer for Online Action Detection Introduction This is a PyTorch implementation for our NeurIPS 2021 Spotlight paper "Long Short

3D Object Reconstruction from a Single Depth View with Adversarial Learning Bo Yang, Hongkai Wen, Sen Wang, Ronald Clark, Andrew Markham, Niki Trigoni

3D-R2N2: 3D Recurrent Reconstruction Neural Network This repository contains the source codes for the paper Choy et al., 3D-R2N2: A Unified Approach f

Location-Aware Generative Adversarial Networks (LAGAN) for Physics Synthesis This repository contains all the code used in L. de Oliveira (@lukedeo),

Photo-Realistic-Super-Resoluton Torch Implementation of "Photo-Realistic Single Image Super-Resolution Using a Generative Adversarial Network" [Paper]

Sentiment Analysis Project This project contains two sentiment analysis programs for Hotel Reviews using a Hotel Reviews dataset from Datafiniti. The

HDBSCAN HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates

FCPS Fundamental Clustering Problems Suite The package provides over sixty state-of-the-art clustering algorithms for unsupervised machine learning pu

tree-SNE t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in s

PhenoGraph for Python3 PhenoGraph is a clustering method designed for high-dimensional single-cell data. It works by creating a graph ("network") repr

Description Kats is a toolkit to analyze time series data, a lightweight, easy-to-use, and generalizable framework to perform time series analysis. Ti

pmdarima Pmdarima (originally pyramid-arima, for the anagram of 'py' + 'arima') is a statistical library designed to fill the void in Python's time se

pmdarima Pmdarima (originally pyramid-arima, for the anagram of 'py' + 'arima') is a statistical library designed to fill the void in Python's time se

GENDIS GENetic DIscovery of Shapelets In the time series classification domain, shapelets are small subseries that are discriminative for a certain cl

An experimental Python-to-C transpiler and domain specific language for embedded high-performance computing

CenterPose Overview This repository is the official implementation of the paper "Single-stage Keypoint-based Category-level Object Pose Estimation fro

Welcome to Official repository of deepflash2 - a deep-learning pipeline for segmentation of ambiguous microscopic images. Quick Start in 30 seconds se

CID3 This is a full-featured Decision Trees and Random Forests learner. It can save trees or forests to disk for later use. It is possible to query tr

Memotion Analysis Through The Lens Of Joint Embedding This repository contains the experiments conducted as described in the paper 'Memotion Analysis

kwd-extraction-study This repository is maintained for the scientific paper tittled " Study of keyword extraction techniques for Electric Double Layer

Stochastic Model Building (SMB) This repository includes a new fast and robust stochastic optimization algorithm for training deep learning models. Th

Stochastic Extragradient: General Analysis and Improved Rates This repository is the official implementation of the paper "Stochastic Extragradient: G

StableLLVE This is a Pytorch implementation of "Learning Temporal Consistency for Low Light Video Enhancement from Single Images" in CVPR 2021, by Fan

PythonImage2PDF A simple Python script to convert multiple images into a single PDF-document. Created basically for only my own needs for converting m

Interactive Web App with Streamlit and Scikit-learn that applies different Classification algorithms to popular datasets Datasets Used: Iris dataset,

Introduction MASS allows you to search a time series for a subquery resulting in an array of distances. These array of distances enable you to identif

QuantStats: Portfolio analytics for quants QuantStats Python library that performs portfolio profiling, allowing quants and portfolio managers to unde

scikit-survival scikit-survival is a Python module for survival analysis built on top of scikit-learn. It allows doing survival analysis while utilizi

survivalstan: Survival Models in Stan author: Jacki Novik Overview Library of Stan Models for Survival Analysis Features: Variety of standard survival

PySurvival What is Pysurvival ? PySurvival is an open source python package for Survival Analysis modeling - the modeling concept used to analyze or p

Package: dsm Python package dsm provides an API to train the Deep Survival Machines and associated models for problems in survival analysis. The under

Banpei Banpei is a Python package of the anomaly detection. Anomaly detection is a technique used to identify unusual patterns that do not conform to

Causal Inference 360 A Python package for inferring causal effects from observational data. Description Causal inference analysis enables estimating t

moDel Agnostic Language for Exploration and eXplanation Overview Unverified black box model is the path to the failure. Opaqueness leads to distrust.

EZ-Graph EZ Graph is a GUI that allows users to make and train neural networks without writing a single line of code. Requirements python 3 pandas num

Medical Image Segmentation with Guided Attention This repository contains the code of our paper: "'Multi-scale self-guided attention for medical image

A combination of autoregressors and autoencoders using XLNet for sentiment analysis Abstract In this paper sentiment analysis has been performed in or

AlbUNet-1D-2D-Tensorflow-Keras This repository contains 1D and 2D Signal Segmentation Model Builder for AlbUNet and several of its variants developed

Sentiment analysis on streaming twitter data using Spark Structured Streaming & Python This project is a good starting point for those who have little

quick_eda Receiving dataframe statistics with one command Project description A python package for Data Scientists, Students, ML Engineers and anyone

Data Scientist in Simple Stock Analysis of PT Bukalapak.com Tbk for Long Term Investment Brief explanation of PT Bukalapak.com Tbk Bukalapak was found

Template Script Category Description Category script comparison script train.py, loader.py for single-machine-multiple-cards training train_DP.py, tra

Numerics Numerical Analysis toolkit centred around PDEs, for demonstration and understanding purposes not production Use procedure: Initialise a new i

E-Shelter Excel2QR Reads Data from given Excel File and exports Single PDFs and a complete PDF grouped by Gateway Features Reads Excel 2021 Export Sin

Deep Neural Network Prediction Step 1. Genernate random parameters and Run them sequentially : $ python3 collect_data.py -gp -ep -pp -pl pooling -num

strava-offline Overview strava-offline is a tool to keep a local mirror of Strava activities for further analysis/processing: synchronizes metadata ab

nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order

SkeletonNet This repository constains the codes and ShapeNetV1-Surface-Skeleton,ShapNetV1-SkeletalVolume and 2d image datasets ShapeNetRendering. Plea

qg-edgeofchaos Analysis scripts for QG equations FIle/Folder Structure eigensolvers.py - Spectral and finite-difference solvers for Rossby wave eigenf

Log processor for nginx or apache that extracts user and user sessions and calculates other types of useful data for bot detection or traffic analysis

A Python adaption of Augur to prioritize cell types in perturbation analysis.

freud Overview The freud Python library provides a simple, flexible, powerful set of tools for analyzing trajectories obtained from molecular dynamics

pymwp: MWP analysis in Python pymwp is a tool for automatically performing static analysis on programs written in C, inspired by "A Flow Calculus of m

Office365 (Microsoft365) audit log analysis tool The header describes it all WHY?? The first line of code was written long time before other colleague

This is an example of how to automate Ridit Analysis for a dataset with large amount of questions and many item attributes

Cellpose | A generalist algorithm for cell and nucleus segmentation. Cellpose was written by Carsen Stringer and Marius Pachitariu. To learn about Cel

Analysis of cross-lingual citations in English papers Contents initial_analysis Source code, data, and evaluation details as published at ICADL2020 ci

BeatNet A package for music online and offline rhythmic information analysis including music Beat, downbeat, tempo and meter tracking. This repository

Efficient electromagnetic solver based on rigorous coupled-wave analysis for 3D and 2D multi-layered structures with in-plane periodicity, such as gratings, photonic-crystal slabs, metasurfaces, surface-emitting lasers, nano-antennas, and more.

Obsei is a low code AI powered automation tool. It can be used in various business flows like social listening, AI based alerting, brand image analysis, comparative study and more .

4CAT: Capture and Analysis Toolkit 4CAT is a research tool that can be used to analyse and process data from online social platforms. Its goal is to m

Robocop Introduction Documentation Values Requirements Installation Usage Example Robotidy FAQ Watch our talk from RoboCon 2021 about Robocop and Robo

Photon-Starved Scene Inference using Single Photon Cameras ICCV 2021 Arxiv Project Video Bhavya Goyal, Mohit Gupta University of Wisconsin-Madison Abs

Human Trajectory Prediction via Counterfactual Analysis (CausalHTP) The official PyTorch code implementation of "Human Trajectory Prediction via Count

Single/Multiple Object Tracking and Segmentation Codes and comparison of recent single/multiple object tracking and segmentation. News 💥 AutoMatch is

VFedPCA+VFedAKPCA This is the official source code for the Paper: Vertical Federated Principal Component Analysis and Its Kernel Extension on Feature-

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

Exploring aircraft accidents in Brazil Occurrencies with aircraft in Brazil are investigated by the Center for Investigation and Prevention of Aircraf

About Unsub is a collection analysis tool that assists libraries in analyzing their journal subscriptions. The tool provides rich data and a summary g

cLoops2: full stack analysis tool for chromatin interactions Introduction cLoops2 is an extension of our previous work, cLoops. From loop-calling base

reorder_python_imports Tool for automatically reordering python imports. Similar to isort but uses static analysis more. Installation pip install reor

MARIO Multifunctional Analysis of Regions through Input-Output. (Documents) What is it MARIO is a python package for handling input-output tables and

Package Description The difficulties in acquiring spectroscopic data have been a major challenge for supernova surveys. snlstm is developed to provide

A real data analysis and modeling project - restaurant inspections Jafar Pourbemany 9/27/2021 This project represents data analysis and modeling of re

Principal Component Analysis Principal Component Analysis (PCA) is a dimension-reduction algorithm. The idea is to use the singular value decompositio

Exploratory data analysis An Exploratory data analysis APP TAPIWA CHAMBOKO 🚀 About Me I'm a full stack developer experienced in deploying artificial

edaSQL is a python library to bridge the SQL with Exploratory Data Analysis where you can connect to the Database and insert the queries. The query results can be passed to the EDA tool which can give greater insights to the user.

StDashApp Stock Analysis Dashboard Using Streamlit and Python If you found the content useful and want to support my work, you can buy me a coffee! Th

craiglist-helper synopsis Perform sentiment analysis and keyword extraction on Craigslist listings Background I love Craigslist. I've found most of my

Placeholder Placeholders is a single-unit file storage solution for your Frontend. Why Placeholder? Generally, when a website/service requests for fil

ocropy OCRopus is a collection of document analysis programs, not a turn-key OCR system. In order to apply it to your documents, you may need to do so

logdata-anomaly-miner This tool parses log data and allows to define analysis pipelines for anomaly detection. It was designed to run the analysis wit

Install vintools To download this package from pypi: pip install vintools Install the development package To download and install the developmen

waltlabtools A collection of tools for biomedical research assay analysis in Python. Key Features Analysis for assays such as digital ELISA, including

Summary This is the source code for the paper "A Case Study and Qualitative Analysis of Simple Cross-Lingual Opinion Mining", which was accepted as fu

Caboto Caboto, the Kubernetes semantic analysis toolkit. It contains a lightweight Python library for semantic analysis of plain Kubernetes manifests

uber-pickups-analysis Data Source: https://www.kaggle.com/fivethirtyeight/uber-pickups-in-new-york-city Information about data set The dataset contain

Virtual-Artificial-Intelligence-genesis- I created My own Virtual Artificial Intelligence named genesis, He can assist with my Tasks and also perform

Map single-cell transcriptomes to copy number evolutionary trees. Check out the tutorial for more information. Installation $ pip install scatrex SCA

A lightweight and powerful python module for scientific analysis and visualization of 3d objects.

FinEAS: Financial Embedding Analysis of Sentiment 📈 (SentenceBERT for Financial News Sentiment Regression) This repository contains the code for gene

Jump Reward Inference for 1D Music Rhythmic State Spaces An implementation of the probablistic jump reward inference model for music rhythmic informat