Python Graph-Analysis-From-Scratch Resources

Pretraining on Dynamic Graph Neural Networks Our article is PT-DGNN and the code is modified based on GPT-GNN Requirements python 3.6 Ubuntu 18.04.5 L

DGI Deep Graph Infomax (Veličković et al., ICLR 2019): https://arxiv.org/abs/1809.10341 Overview Here we provide an implementation of Deep Graph Infom

Unsupervised Attributed Multiplex Network Embedding (DMGI) Overview Nodes in a multiplex network are connected by multiple types of relations. However

Heterogeneous-Deep-Graph-Infomax Parameter Setting: HDGI-A: Node-level dimension: 16 Attention head: 4 Semantic-level attention vector: 8 learning rat

Subg-Con Sub-graph Contrast for Scalable Self-Supervised Graph Representation Learning (Jiao et al., ICDM 2020): https://arxiv.org/abs/2009.10273 Over

Graph-InfoClust-GIC [PAKDD 2021] PAKDD'21 version Graph InfoClust: Maximizing Coarse-Grain Mutual Information in Graphs Preprint version Graph InfoClu

Artistools Artistools is collection of plotting, analysis, and file format conversion tools for the ARTIS radiative transfer code. Installation First

Single-Cell Image Analysis Package Scimap is a scalable toolkit for analyzing spatial molecular data. The underlying framework is generalizable to spa

Author: Behrouz Safari License: MIT sdss A python package for retrieving and analysing data from SDSS (Sloan Digital Sky Survey) Installation Install

Flight Review This is a web application for flight log analysis. It allows users to upload ULog flight logs, and analyze them through the browser. It

MC Outpost A Python server and client application that tracks player session times and server status About MC Outpost provides a session graph and ser

PyMeasure scientific package PyMeasure makes scientific measurements easy to set up and run. The package contains a repository of instrument classes a

Spotify-Wrapped This is a project about Spotify Wrapped (which is an extra option for premium accounts, but you don't need to be premium here) This pr

SPECTRUM : Spectral Analysis in Python contributions: Please join https://github.com/cokelaer/spectrum contributors: https://github.com/cokelaer/spect

XYZ Spaces for Python Manage your XYZ Hub or HERE Data Hub spaces and Interactive Map Layer from Python. FEATURED IN: Online Python Machine Learning C

Electrical Network Analyzer A simple electrical network analyzer. Given the oriented graph of the electrical network (circut), BASED ON computer-aided

Towards End-to-End Image Compression and Analysis with Transformers Source code of our AAAI 2022 paper "Towards End-to-End Image Compression and Analy

Block Modeling-Guided Graph Convolutional Neural Networks This repository contains the demo code of the paper: Block Modeling-Guided Graph Convolution

MSHT: Multi-stage Hybrid Transformer for the ROSE Image Analysis This is the official page of the MSHT with its experimental script and records. We de

InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization Authors: Fan-yun Sun, Jordan Hoffm

NeoDTI NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions (Bioinformatics).

SelfTask-GNN A PyTorch implementation of "Self-supervised Learning on Graphs: Deep Insights and New Directions". [paper] In this paper, we first deepe

Graph-Bert Source code of "Graph-Bert: Only Attention is Needed for Learning Graph Representations". Please check the script.py as the entry point. We

Pretrain-Recsys This is our Tensorflow implementation for our WSDM 2021 paper: Bowen Hao, Jing Zhang, Hongzhi Yin, Cuiping Li, Hong Chen. Pre-Training

SLAPS-GNN This repo contains the implementation of the model proposed in SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networks

G-Bert Pre-training of Graph Augmented Transformers for Medication Recommendation Intro G-Bert combined the power of Graph Neural Networks and BERT (B

GPT-GNN: Generative Pre-Training of Graph Neural Networks GPT-GNN is a pre-training framework to initialize GNNs by generative pre-training. It can be

Self-supervised Auxiliary Learning with Meta-paths for Heterogeneous Graphs This repository is the implementation of SELAR. Dasol Hwang* , Jinyoung Pa

deeper_insights_into_GCNs Deeper insights into graph convolutional networks for semi-supervised learning References data and utils.py come from Implem

Reference Code for AAAI-20 paper "Multi-Stage Self-Supervised Learning for Graph Convolutional Networks on Graphs with Few Labels" Please refer to htt

Self-supervised edge features for improved Graph Neural Network training Data availability: Here is a link to the raw data for the organoids dataset.

DrRepair: Learning to Repair Programs from Error Messages This repo provides the source code & data of our paper: Graph-based, Self-Supervised Program

Implementation for the papers: Self-Supervised Hyperboloid Representations from Logical Queries over Knowledge Graphs, Nurendra Choudhary, Nikhil Rao,

[Paper] [Project page] This repository contains code for the paper: Andrew Owens, Alexei A. Efros. Audio-Visual Scene Analysis with Self-Supervised Mu

EN/en Repository created with LinkedIn profile analysis project done. The datase

esc_test This is a Python package used to plot and analyze data collected for the purpose of characterizing a particular propeller, motor, and ESC con

SAG-DTA The code is the implementation for the paper 'SAG-DTA: Prediction of Drug–Target Affinity Using Self-Attention Graph Network'. Requirements py

tedana: TE Dependent ANAlysis TE-dependent analysis (tedana) is a Python library for denoising multi-echo functional magnetic resonance imaging (fMRI)

Time-series-visualizer Time series visualizer is a flexible extension that provides filling world map by country from csv or json file. You can know d

Sleep As Android custom integration This integration will allow you to get events from your SleepAsAndroid application in a form of the sensor states

Profile and test to gain insights into the performance of your beautiful Python code View Demo - Report Bug - Request Feature QuickPotato in a nutshel

An Obfuscation-Neglect Android Malware Scoring System Quark-Engine is also bundled with Kali Linux, BlackArch. A trust-worthy, practical tool that's r

Cross Domain Facial Expression Recognition Benchmark Implementation of papers: Cross-Domain Facial Expression Recognition: A Unified Evaluation Benchm

This repository contains code of face emotion recognition that was developed in the RSF (Russian Science Foundation) project no. 20-71-10010 (Efficien

IMDB Sentiment Analysis This is the final project of Machine Learning Courses in Huazhong University of Science and Technology, School of Artificial I

Chemicology Chemical Analysis Calculator, to solve problems efficiently by displaying whole solution. Go to releases for downloading .exe, .dmg, Linux

emoTag emoTag helps you train emotion detection model for Chinese audios. Environment pip install -r requirement.txt Data We used Emotional Speech Dat

Overview BisQue is a web-based platform specifically designed to provide researchers with organizational and quantitative analysis tools for up to 5D

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

A Python library for design by contract (DbC) and checking values, exceptions, and side-effects. In a nutshell, deal empowers you to write bug-free co

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

MS Graph API authentication example with Fast API What it is & does This is a simple python service/webapp, using FastAPI with server side rendering,

cppdep performs dependency analysis among components/packages/package groups of a large C/C++ project. This is a rewrite of dep_utils(adep/cdep/ldep), which is provided by John Lakos' book "Large-Scale C++ Software Design", Addison Wesley (1996).

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

Auxiliator Auxiliator is telegram bot for basic web-application analysis What for? Sometimes there is no access to your main PC, where you can scan we

Runtime analysis of code with plotting A quick comparison among Python, Cython, and the C languages A Programming Assignment regarding the Programming

pysal/spaghetti SPAtial GrapHs: nETworks, Topology, & Inference Spaghetti is an open-source Python library for the analysis of network-based spatial d

Practical Data Visualization with Python Overview All views expressed on this site are my own and do not represent the opinions of any entity with whi

tfgraphviz tfgraphviz is a module to visualize a TensorFlow's data flow graph like TensorBoard using Graphviz. tfgraphviz enables to provide a visuali

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

PyTea: PyTorch Tensor Shape Error Analyzer paper project page Requirements node.js = 12.x python = 3.8 z3-solver = 4.8 How to install and use # ins

Build an Amazon SageMaker Pipeline to Transform Raw Texts to A Knowledge Graph This repository provides a pipeline to create a knowledge graph from ra

OpenQuake Engine The OpenQuake Engine is an open source application that allows users to compute seismic hazard and seismic risk of earthquakes on a g

transformer-from-scratch Code for my Medium blog post: Transformers from Scratch in PyTorch Note: This Transformer code does not include masked attent

Decision_Tree_Regression I implemented the decision tree regression algorithm on Python. Unlike regular linear regression, this algorithm is used when

qpcr-Analyser A web-based GUI for the qpcr package that allows easy, simple and high-throughput analysis of qPCR data. As is described in more detail

PyNode Next A complete rewrite of PyNode for the modern era. Up to five times faster than the original PyNode. PyNode Next allows you to easily create

This repository contains sample code scripts for creating awesome data visualizations from scratch using different python libraries (such as matplotli

discretisedfield Marijan Beg1,2, Martin Lang2, Samuel Holt3, Ryan A. Pepper4, Hans Fangohr2,5,6 1 Department of Earth Science and Engineering, Imperia

UX Analytics & A/B Testing

Tefas UI A simple terminal UI for viewing fund P/L analysis through TEFAS. Features (that my own bank's UI lack): Daily and weekly P/L FX comparisons

OctaDist Octahedral distortion calculator: A tool for calculating distortion parameters in coordination complexes. https://octadist.github.io/ Registe

Simplemma: a simple multilingual lemmatizer for Python Purpose Lemmatization is the process of grouping together the inflected forms of a word so they

YouCompleteMe: a code-completion engine for Vim Help, Advice, Support Looking for help, advice or support? Having problems getting YCM to work? First

Transcript Analysis - Graph + NLP This program extracts insights from Zoom Meeting Transcripts (.vtt) using TigerGraph and NLTK. In order to run this

BONITA-Python3 BONITA was originally written in Python 2 and tested with Python 2-compatible packages. This version of the packages ports BONITA to Py

Sieve Video Data Collection Example Find samples that are interesting within hours of raw video, for free and completely automatically using Sieve API

DAG_Generator Random Directed Acyclic Graph Generator verison1.0 简介 工作流通常由DAG（有向无环图）来定义，其中每个计算任务$T_i$由一个顶点(node,task,vertex)表示。同时，任务之间的每个数据或控制依赖性由一条加权

AKShare is an elegant and simple financial data interface library for Python, built for human beings

Population Shift Monitoring popmon is a package that allows one to check the stability of a dataset. popmon works with both pandas and spark datasets.

Drugwars The DOS game from the 80s re-written in Python from Scratch! Play in your browser Here Installation Recommended: Using pip pip3 install drugw

PcapXray - A Network Forensics Tool - To visualize a Packet Capture offline as a Network Diagram including device identification, highlight important communication and file extraction

CleverCSV is a Python package for handling messy CSV files. It provides a drop-in replacement for the builtin CSV module with improved dialect detection, and comes with a handy command line application for working with CSV files.

Multimodal Trajectory Prediction Conditioned on Lane-Graph Traversals This repository contains code for "Multimodal trajectory prediction conditioned

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

Neointerface - Neo4j made easy for Python programmers! A Python interface to use the Neo4j graph database, and simplify its use. class NeoInterface: C

HyFactor Graph-based architectures are becoming increasingly popular as a tool for structure generation. Here, we introduce a novel open-source archit

ForceAtlas2 for Python A port of Gephi's Force Atlas 2 layout algorithm to Python 2 and Python 3 (with a wrapper for NetworkX and igraph). This is the

gdsclient NOTE: This is a work in progress and many GDS features are known to be missing or not working properly. This repo hosts the sources for gdsc

gdsclient This repo hosts the sources for gdsclient, a Python wrapper API for operating and working with the Neo4j Graph Data Science (GDS) library. g

Analyse des sentiments à partir des Tweets L'application est développée par Streamlit L'analyse sentimentale est effectuée sur l'ensemble de données d

deepGCFX PyTorch implementation for our AAAI 2022 Paper "Graph-wise Common Latent Factor Extraction for Unsupervised Graph Representation Learning" Pr

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

FOSSLight Scanner Analyze at once for Open Source Compliance. FOSSLight Scanner performs open source analysis after downloading the source by passing

quake2021 Data and analysis relating to the 5.8M Melbourne quake of 2021 Monash University Woodside Living Lab Building The building is located here T

topas-create-graphs A script to automatically plot the results of a topas simulation Works for percentage depth dose (pdd) and dose profiles (dp). Dep

fuse-feasibility-analysis Predict if a fuse is usable on an appliance depending on the fuse rating , Power rating and resistance in the appliance

ReFine: Multi-Grained Explainability for GNNs This is the official code for Towards Multi-Grained Explainability for Graph Neural Networks (NeurIPS 20

S T E R R A 🔭 A SOCMINT tool to get infos from an Instagram acc via its Followers / Following Allows you to analyse someone's followers, following, a