Python Biomedical-image-analysis Resources

Time series analysis today is an important cornerstone of quantitative science in many disciplines, including natural and life sciences as well as eco

tslearn The machine learning toolkit for time series analysis in Python Section Description Installation Installing the dependencies and tslearn Getti

[Due to the time taken @ uni, work + hell breaking loose in my life, since things have calmed down a bit, will continue commiting!!!] [By the way, I'm

Mlxtend (machine learning extensions) is a Python library of useful tools for the day-to-day data science tasks. Sebastian Raschka 2014-2021 Links Doc

dlib C++ library Dlib is a modern C++ toolkit containing machine learning algorithms and tools for creating complex software in C++ to solve real worl

What is xLearn? xLearn is a high performance, easy-to-use, and scalable machine learning package that contains linear model (LR), factorization machin

PENet: Precise and Efficient Depth Completion This repo is the PyTorch implementation of our paper to appear in ICRA2021 on "Towards Precise and Effic

CVE-2021-23132 com_media allowed paths that are not intended for image uploads to RCE. CVE-2020-24597 Directory traversal in com_media to RCE Two CVEs

invisible-watermark invisible-watermark is a python library and command line tool for creating invisible watermark over image.(aka. blink image waterm

Deep Illuminator Deep Illuminator is a data augmentation tool designed for image relighting. It can be used to easily and efficiently genera

GANsformer: Generative Adversarial Transformers Drew A. Hudson* & C. Lawrence Zitnick *I wish to thank Christopher D. Manning for the fruitf

Transformer in Transformer Implementation of Transformer in Transformer, pixel level attention paired with patch level attention for image c

Demo Code for "Talking Head Anime from a Single Image 2: More Expressive" This repository contains demo programs for the Talking Head Anime

HiSD: Image-to-image Translation via Hierarchical Style Disentanglement Official pytorch implementation of paper "Image-to-image Translation

Image Editor - An open source image editor which can manipulate an image in many ways! If you need any more modes in repo or I

Orange Data Mining Orange is a data mining and visualization toolbox for novice and expert alike. To explore data with Orange, one requires no program

Table of contents What is PEM? Overview Installation Usage Executable Library Telegram Bot Try OPEM in Your Browser! MATLAB Issues & Bug Reports Contr

MOSAIC: A modular single-molecule analysis interface MOSAIC is a single molecule analysis toolbox that automatically decodes multi-state nanopore data

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure

StudioGAN is a Pytorch library providing implementations of representative Generative Adversarial Networks (GANs) for conditional/unconditional image generation.

The open-source core of Pinry, a tiling image board system for people who want to save, tag, and share images, videos and webpages in an easy to skim

Friture Friture is an application to visualize and analyze live audio data in real-time. Friture displays audio data in several widgets, such as a sco

CIPS -- Official Pytorch Implementation of the paper Image Generators with Conditionally-Independent Pixel Synthesis Requirements pip install -r requi

Easy to setup customizable honeypots for monitoring network traffic, bots activities and username\password credentials. The current available honeypot

Medical-Transformer Pytorch Code for the paper "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" About this repo: This repo

Quru Image Server - dynamic imaging for web and print QIS is a high performance web server for creating and delivering dynamic images. It is ideal for

Photonix Photo Manager This is a photo management application based on web technologies. Run it on your home server and it will let you find what you

ocropy OCRopus is a collection of document analysis programs, not a turn-key OCR system. In order to apply it to your documents, you may need to do so

Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework. Learn more details abou

a BTC Clipper or a "Bitcoin Clipper" is a type of malware designed to target cryptocurrency transactions.

TransUNet This repo holds code for TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation Usage

Official PyTorch code for ClipBERT, an efficient framework for end-to-end learning on image-text and video-text tasks. It takes raw videos/images + text as inputs, and outputs task predictions. ClipBERT is designed based on 2D CNNs and transformers, and uses a sparse sampling strategy to enable efficient end-to-end video-and-language learning.

Hide secret texts/messages inside an image. You can optionally encrypt your texts with a password using AES-256 before encoding into the image.

BaseSpec is a system that performs a comparative analysis of baseband implementation and the specifications of cellular networks. The key intuition of BaseSpec is that a message decoder in baseband software embeds the protocol specification in a machine-friendly structure to parse incoming messages;

SeaLion is designed to teach today's aspiring ml-engineers the popular machine learning concepts of today in a way that gives both intuition and ways of application. We do this through concise algorithms that do the job in the least jargon possible and examples to guide you through every step of the way.

HyperTag HyperTag helps humans intuitively express how they think about their files using tags and machine learning.

xgbse: XGBoost Survival Embeddings "There are two cultures in the use of statistical modeling to reach conclusions from data

CANalyse is a tool built to analyze the log files to find out unique datasets automatically and able to connect to simple user interfaces suc

一键翻译各类图片内文字 针对群内、各个图站上大量不太可能会有人去翻译的图片设计，让我这种日语小白能够勉强看懂图片 主要支持日语，不过也能识别汉语和小写英文 支持简单的涂白和嵌字

HyperTag helps humans intuitively express how they think about their files using tags and machine learning. Represent how you think using tags. Find what you look for using semantic search for your text documents (yes, even PDF's) and images.

Supported tags and respective Dockerfile links python3.8, latest (Dockerfile) python3.7, (Dockerfile) python3.6 (Dockerfile) python3.8-slim (Dockerfil

The HyperNetX library provides classes and methods for the analysis and visualization of complex network data. HyperNetX uses data structures designed to represent set systems containing nested data and/or multi-way relationships. The library generalizes traditional graph metrics to hypergraphs.

Summarization, translation, Q&A, text generation and more at blazing speed using a T5 version implemented in ONNX. This package is still in alpha stag

WHAT: Supervised text vectorization tool Textvec is a text vectorization tool, with the aim to implement all the "classic" text vectorization NLP meth

VizSeq is a Python toolkit for visual analysis on text generation tasks like machine translation, summarization, image captioning, speech translation

textpipe: clean and extract metadata from text textpipe is a Python package for converting raw text in to clean, readable text and extracting metadata

Scattertext 0.1.0.0 A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding t

This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

Spark NLP: State of the Art Natural Language Processing Spark NLP is a Natural Language Processing library built on top of Apache Spark ML. It provide

VADER-Sentiment-Analysis VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool that is specifica

An easier way to build neural search on the cloud Jina is a deep learning-powered search framework for building cross-/multi-modal search systems (e.g

TextBlob: Simplified Text Processing Homepage: https://textblob.readthedocs.io/ TextBlob is a Python (2 and 3) library for processing textual data. It

pivottablejs: the Python module Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js Installation pip install pivot

plotnine Latest Release License DOI Build Status Coverage Documentation plotnine is an implementation of a grammar of graphics in Python, it is based

In-depth EDA (target analysis, comparison, feature analysis, correlation) in two lines of code! Sweetviz is an open-source Python library that generat

PyVista Deployment Build Status Metrics Citation License Community 3D plotting and mesh analysis through a streamlined interface for the Visualization

missingno Messy datasets? Missing values? missingno provides a small toolset of flexible and easy-to-use missing data visualizations and utilities tha

UMAP Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, bu

Pandas Profiling Documentation | Slack | Stack Overflow Generates profile reports from a pandas DataFrame. The pandas df.describe() function is great

CATCHY Corpus Analysis Tools for Computational Hook discovery Python tools for the corpus analysis of popular music recordings. The tools can be used

A Python library for audio feature extraction, classification, segmentation and applications This doc contains general info. Click here for the comple

Summary Pyroomacoustics is a software package aimed at the rapid development and testing of audio array processing algorithms. The content of the pack

MDCT A fast MDCT implementation using SciPy and FFTs Installation As usual pip install mdct Dependencies NumPy SciPy STFT Usage import mdct spectrum

A neural-based binary analysis tool Introduction This directory contains the demo of a neural-based binary analysis tool. We test the framework using

You Only Need Adversarial Supervision for Semantic Image Synthesis Official PyTorch implementation of the ICLR 2021 paper "You Only Need Adversarial S

Docker Container wallstreetbets-sentiment-analysis A docker container using restful endpoints exposed on port 5000 "/analyze" to gather sentiment anal

Exploring Cross-Image Pixel Contrast for Semantic Segmentation Exploring Cross-Image Pixel Contrast for Semantic Segmentation, Wenguan Wang, Tianfei Z

TickerRain is an open-source web app that stores and analysis Reddit posts in a transparent and semi-interactive manner

SAHI: Slicing Aided Hyper Inference A vision library for performing sliced inference on large images/small objects Overview Object detection and insta

A Theoretical Analysis of the Repetition Problem in Text Generation This repository share the code for the paper "A Theoretical Analysis of the Repeti

PyTorch implementation of Normalizer-Free Networks and SGD - Adaptive Gradient Clipping Paper: https://arxiv.org/abs/2102.06171.pdf Original code: htt

Multi-Stage Progressive Image Restoration Syed Waqas Zamir, Aditya Arora, Salman Khan, Munawar Hayat, Fahad Shahbaz Khan, Ming-Hsuan Yang, and Ling Sh

Summarization, translation, Q&A, text generation and more at blazing speed using a T5 version implemented in ONNX. This package is still in alpha stag

WHAT: Supervised text vectorization tool Textvec is a text vectorization tool, with the aim to implement all the "classic" text vectorization NLP meth

VizSeq is a Python toolkit for visual analysis on text generation tasks like machine translation, summarization, image captioning, speech translation

textpipe: clean and extract metadata from text textpipe is a Python package for converting raw text in to clean, readable text and extracting metadata

Scattertext 0.1.0.0 A tool for finding distinguishing terms in corpora and displaying them in an interactive HTML scatter plot. Points corresponding t

This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

Spark NLP: State of the Art Natural Language Processing Spark NLP is a Natural Language Processing library built on top of Apache Spark ML. It provide

VADER-Sentiment-Analysis VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool that is specifica

An easier way to build neural search on the cloud Jina is a deep learning-powered search framework for building cross-/multi-modal search systems (e.g

TextBlob: Simplified Text Processing Homepage: https://textblob.readthedocs.io/ TextBlob is a Python (2 and 3) library for processing textual data. It

pivottablejs: the Python module Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js Installation pip install pivot

plotnine Latest Release License DOI Build Status Coverage Documentation plotnine is an implementation of a grammar of graphics in Python, it is based

In-depth EDA (target analysis, comparison, feature analysis, correlation) in two lines of code! Sweetviz is an open-source Python library that generat

PyVista Deployment Build Status Metrics Citation License Community 3D plotting and mesh analysis through a streamlined interface for the Visualization

missingno Messy datasets? Missing values? missingno provides a small toolset of flexible and easy-to-use missing data visualizations and utilities tha

UMAP Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, bu

Pandas Profiling Documentation | Slack | Stack Overflow Generates profile reports from a pandas DataFrame. The pandas df.describe() function is great

dlib C++ library Dlib is a modern C++ toolkit containing machine learning algorithms and tools for creating complex software in C++ to solve real worl

fklearn: Functional Machine Learning fklearn uses functional programming principles to make it easier to solve real problems with Machine Learning. Th

What is xLearn? xLearn is a high performance, easy-to-use, and scalable machine learning package that contains linear model (LR), factorization machin

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

scikit-learn is a Python module for machine learning built on top of SciPy and is distributed under the 3-Clause BSD license. The project was started

scalene: a high-performance CPU and memory profiler for Python by Emery Berger 中文版本 (Chinese version) About Scalene % pip install -U scalene Scalen

py-spy: Sampling profiler for Python programs py-spy is a sampling profiler for Python programs. It lets you visualize what your Python program is spe

McCabe complexity checker Ned's script to check McCabe complexity. This module provides a plugin for flake8, the Python code checker. Installation You

Radon Radon is a Python tool that computes various metrics from the source code. Radon can compute: McCabe's complexity, i.e. cyclomatic complexity ra

Dlint Dlint is a tool for encouraging best coding practices and helping ensure Python code is secure. The most important thing I have done as a progra

This project is no longer maintained March 2020 Update: Please go see the amazing Pysa tutorial that should get you up to speed finding security vulne