Python Biomedical-knowledge-graph Resources

PLOME:Pre-training with Misspelled Knowledge for Chinese Spelling Correction (ACL2021) This repository provides the code and data of the work in ACL20

Introduction MutualGuide is a compact object detector specially designed for embedded devices. Comparing to existing detectors, this repo contains two

Neural Lexicon Reader: Reduce Pronunciation Errors in End-to-end TTS by Leveraging External Textual Knowledge This is an implementation of the paper,

HRKD: Hierarchical Relational Knowledge Distillation for Cross-domain Language Model Compression This repository contains the code for the paper in EM

Dataset Knowledge Transfer for Class-Incremental Learning Without Memory [Paper] [Slides] Summary Introduction Installation Reproducing results Citati

MTDM Temporal Knowledge Graph Reasoning Triggered by Memories To alleviate the time dependence, we propose a memory-triggered decision-making (MTDM) n

MIA GNN Project Starter If you meet the version mismatch error for Lasagne library, please use following command to upgrade Lasagne library. pip insta

Edge Rewiring Goes Neural: Boosting Network Resilience via Policy Gradient This repository is the official PyTorch implementation of "Edge Rewiring Go

Graph2SMILES A graph-to-sequence model for one-step retrosynthesis and reaction outcome prediction. 1. Environmental setup System requirements Ubuntu:

Learning to Learn Graph Topologies This is the official code of L2G, Unrolling and Recurrent Unrolling in Learning to Learn Graph Topologies. Requirem

VLG-Net: Video-Language Graph Matching Networks for Video Grounding Introduction Official repository for VLG-Net: Video-Language Graph Matching Networ

FairGo WWW2021 Learning Fair Representations for Recommendation: A Graph-based Perspective As a key application of artificial intelligence, recommende

FairGNN A PyTorch implementation of "Say No to the Discrimination: Learning Fair Graph Neural Networks with Limited Sensitive Attribute Information" (

Dependencies NOTE: This code has been updated, if you were using this repo earlier and experienced issues that was due to an outaded codebase. Please

Reinforcement Knowledge Graph Reasoning for Explainable Recommendation This repository contains the source code of the SIGIR 2019 paper "Reinforcement

Jointly Learning Explainable Rules for Recommendation with Knowledge Graph

Accuracy-Diversity Trade-off in Recommender Systems via Graph Convolutions This repository contains the code of the paper "Accuracy-Diversity Trade-of

DGCN This is the official implementation of our WWW'21 paper: Yu Zheng, Chen Gao, Liang Chen, Depeng Jin, Yong Li, DGCN: Diversified Recommendation wi

DMBGN: Deep Multi-Behaviors Graph Networks for Voucher Redemption Rate Prediction The implementation of the accepted paper "Deep Multi-Behaviors Graph

GHCF This is our implementation of the paper: Chong Chen, Weizhi Ma, Min Zhang, Zhaowei Wang, Xiuqiang He, Chenyang Wang, Yiqun Liu and Shaoping Ma. 2

HeroGRAPH Code for my ORSUM @ RecSys 2020, HeroGRAPH: A Heterogeneous Graph Framework for Multi-Target Cross-Domain Recommendation Paper, workshop pro

Bi-TGCF Tensorflow Implementation of BiTGCF： Cross Domain Recommendation via Bi-directional Transfer Graph Collaborative Filtering Networks. in CIKM20

hierarchical_fashion_graph_network This is our Tensorflow implementation for the paper: Xingchen Li, Xiang Wang, Xiangnan He, Long Chen, Jun Xiao, and

Bundle Graph Convolutional Network This is our Pytorch implementation for the paper: Jianxin Chang, Chen Gao, Xiangnan He, Depeng Jin and Yong Li. Bun

COTREC Codes for CIKM'21 paper 'Self-Supervised Graph Co-Training for Session-based Recommendation'. Requirements: Python 3.7, Pytorch 1.6.0 Best Hype

DGTN: Dual-channel Graph Transition Network for Session-based Recommendation This repository contains PyTorch Implementation of ICDMW 2020 (NeuRec @ I

MKM-SR Incorporating User Micro-behaviors and Item Knowledge into Multi-task Learning for Session-based Recommendation Paper data and code This is the

GCE-GNN Code This is the source code for SIGIR 2020 Paper: Global Context Enhanced Graph Neural Networks for Session-based Recommendation. Requirement

LESSR A PyTorch implementation of LESSR (Lossless Edge-order preserving aggregation and Shortcut graph attention for Session-based Recommendation) fro

MGNN-SPred This is our Tensorflow implementation for the paper: WenWang,Wei Zhang, Shukai Liu, Qi Liu, Bo Zhang, Leyu Lin, and Hongyuan Zha. 2020. Bey

Graph-based Embedding Smoothing (GES) This is our Tensorflow implementation for the paper: Tianyu Zhu, Leilei Sun, and Guoqing Chen. "Graph-based Embe

Introduction This is the repository of our accepted CIKM 2021 paper "Continuous-Time Sequential Recommendation with Temporal Graph Collaborative Trans

RetaGNN: Relational Temporal Attentive Graph Neural Networks for Holistic Sequential Recommendation Pytorch based implemention of Relational Temporal

Group-Buying Recommendation for Social E-Commerce This is the official implementation of the paper Group-Buying Recommendation for Social E-Commerce (

KCGN AAAI-2021 《Knowledge-aware Coupled Graph Neural Network for Social Recommendation》 Environments python 3.8 pytorch-1.6 DGL 0.5.3 (https://github.

Basic Information: This code is released for the papers: Le Wu, Peijie Sun, Yanjie Fu, Richang Hong, Xiting Wang and Meng Wang. A Neural Influence Dif

SR-HGNN ICDM-2020 《Global Context Enhanced Social Recommendation with Hierarchical Graph Neural Networks》 Environments python 3.8 pytorch-1.6 DGL 0.5.

This repo contains a tensorflow implementation of RecoGCN and the experiment dataset Running the RecoGCN model python train.py Example training outp

DANSER-WWW-19 This repository holds the codes for Dual Graph Attention Networks for Deep Latent Representation of Multifaceted Social Effects in Recom

Detecting Beneficial Feature Interactions for Recommender Systems (L0-SIGN) This is our implementation for the paper: Su, Y., Zhang, R., Erfani, S., &

PUP This is the official implementation of our ICDE'20 paper: Yu Zheng, Chen Gao, Xiangnan He, Yong Li, Depeng Jin, Price-aware Recommendation with Gr

SGL This is our Tensorflow implementation for our SIGIR 2021 paper: Jiancan Wu, Xiang Wang, Fuli Feng, Xiangnan He, Liang Chen, Jianxun Lian,and Xing

An index of recommendation algorithms that are based on Graph Neural Networks.

Kimimaro: Skeletonize Densely Labeled Images # Produce SWC files from volumetric images. kimimaro forge labels.npy --progress # writes to ./kimimaro_o

Residual2Vec: Debiasing graph embedding using random graphs This repository contains the code for S. Kojaku, J. Yoon, I. Constantino, and Y.-Y. Ahn, R

MrAP This folder contains the implementation of the multi-relational attribute propagation algorithm. It requires the package pytorch-scatter. Please

Graph Neural Networks with Learnable Structural and Positional Representations Source code for the paper "Graph Neural Networks with Learnable Structu

ACE-HGNN: Adaptive Curvature Exploration Hyperbolic Graph Neural Network This repository is the implementation of ACE-HGNN in PyTorch. Environment pyt

Distant Supervision for Scene Graph Generation Data and code for ICCV 2021 paper Distant Supervision for Scene Graph Generation. Introduction The pape

Weakly-supervised Text Classification Based on Keyword Graph How to run? Download data Our dataset follows previous works. For long texts, we follow C

Research 发布基于飞桨的前沿研究工作，包括CV、NLP、KG、STDM等领域的顶会论文和比赛冠军模型。 目录 计算机视觉(Computer Vision) 自然语言处理(Natrual Language Processing) 知识图谱(Knowledge Graph) 时空数据挖掘(Spa

Asymmetric metric learning This is the official code that enables the reproduction of the results from our paper: Asymmetric metric learning for knowl

Hacking-Github-Graph Hacking github graph with a easy python script Requirements git latest version installed. A text editor (eg: vs code, sublime tex

TSOD Code for the ICME 2021 paper "Exploring Driving-Aware Salient Object Detection via Knowledge Transfer" Usage For training, open train_test, run p

KaGRMN-DSG_ABSA This repository contains the PyTorch source Code for our paper: Understand me, if you refer to Aspect Knowledge: Knowledge-aware Gated

Semi-Supervised Graph Prototypical Networks for Hyperspectral Image Classification, IGARSS, 2021. Bobo Xi, Jiaojiao Li, Yunsong Li and Qian Du. Code f

KUIZ KUIZ is a web application quiz where you can create/take a quiz for learning and sharing knowledge from various subjects, questions and answers.

d3-flame-graph A D3.js plugin that produces flame graphs from hierarchical data. If you don't know what flame graphs are, check Brendan Gregg's post.

Improving Weakly Supervised Visual Grounding by Contrastive Knowledge Distillation This repository is the official implementation of CVPR 2021 paper:

Magnetic Graph Convolutional Networks About The official PyTorch implementation for the paper sMGC: A Complex-Valued Graph Convolutional Network via M

SoGCN: Second-Order Graph Convolutional Networks This is the authors' implementation of paper "SoGCN: Second-Order Graph Convolutional Networks" in Py

Research 发布基于飞桨的前沿研究工作，包括CV、NLP、KG、STDM等领域的顶会论文和比赛冠军模型。 目录 计算机视觉(Computer Vision) 自然语言处理(Natrual Language Processing) 知识图谱(Knowledge Graph) 时空数据挖掘(Spa

GCond A PyTorch implementation of paper "Graph Condensation for Graph Neural Networks" Code will be released soon. Stay tuned :) Abstract We propose a

IGNN Code repo for "Cross-Scale Internal Graph Neural Network for Image Super-Resolution" [paper] [supp] Prepare datasets 1 Download training dataset

Overview The Open Graph Benchmark (OGB) is a collection of benchmark datasets, data loaders, and evaluators for graph machine learning. Datasets cover

Graph Convolutional Networks This is a TensorFlow implementation of Graph Convolutional Networks for the task of (semi-supervised) classification of n

Simplifying Graph Convolutional Networks Updates As pointed out by #23, there was a subtle bug in our preprocessing code for the reddit dataset. After

SPAGAN in PyTorch This is a PyTorch implementation of the paper "SPAGAN: Shortest Path Graph Attention Network" Prerequisites We prefer to create a ne

Intro This repository contains code to generate data and reproduce experiments from our NeurIPS 2019 paper: Boris Knyazev, Graham W. Taylor, Mohamed R

Graph Convolutional Networks for Temporal Action Localization This repo holds the codes and models for the PGCN framework presented on ICCV 2019 Graph

IsoGCN The official implementation of IsoGCN, presented in the ICLR2021 paper Isometric Transformation Invariant and Equivariant Graph Convolutional N

Simple and Deep Graph Convolutional Networks This repository contains a PyTorch implementation of "Simple and Deep Graph Convolutional Networks".(http

Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks This repository contains a TensorFlow implementation of "

When Does Self-Supervision Help Graph Convolutional Networks? PyTorch implementation for When Does Self-Supervision Help Graph Convolutional Networks?

DropEdge: Towards Deep Graph Convolutional Networks on Node Classification This is a Pytorch implementation of paper: DropEdge: Towards Deep Graph Con

Benchmarking Graph Neural Networks Updates Nov 2, 2020 Project based on DGL 0.4.2. See the relevant dependencies defined in the environment yml files

GAT Graph Attention Networks (Veličković et al., ICLR 2018): https://arxiv.org/abs/1710.10903 GAT layer t-SNE + Attention coefficients on Cora Overvie

Residual Gated Graph ConvNets April 24, 2018 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbress

DeepGCNs: Can GCNs Go as Deep as CNNs? In this work, we present new ways to successfully train very deep GCNs. We borrow concepts from CNNs, mainly re

A new codebase for popular Scene Graph Generation methods (2020). Visualization & Scene Graph Extraction on custom images/datasets are provided. It's also a PyTorch implementation of paper “Unbiased Scene Graph Generation from Biased Training CVPR 2020”

Markov Chain Composer Using Markov Chain to represent relationships between words in song lyrics and then generating new lyrics.. ahem interpretive po

GraPE GraPE (Graph Processing and Embedding) is a fast graph processing and embedding library, designed to scale with big graphs and to run on both of

Variational Graph Auto-encoder in Pytorch This repository implements variational graph auto-encoder by Thomas Kipf. For details of the model, refer to

This is a repository for the paper of "Well-classified Examples are Underestimated in Classification with Deep Neural Networks" The implementation and

SSSNET SSSNET: Semi-Supervised Signed Network Clustering For details, please read our paper. Environment Setup Overview The project has been tested on

Motif-based Graph Self-Supervised Learning for Molecular Property Prediction Official Pytorch implementation of NeurIPS'21 paper "Motif-based Graph Se

Corp-Rel is a PoC of Corpartion Relationship Knowledge Graph System. It's built on top of the Open Source Graph Database: Nebula Graph with a dataset

Select, Reduce, Connect This repository contains the code used for the experiments of: "Understanding Pooling in Graph Neural Networks" Setup Install

Multi-modal Interaction Graph Convolutioal Network for Temporal Language Localization in Videos Official implementation for Multi-Modal Interaction Gr

MMSceneGraph Introduction MMSceneneGraph is an open source code hub for scene graph generation as well as supporting downstream tasks based on the sce

3D Infomax improves GNNs for Molecular Property Prediction Video | Paper We pre-train GNNs to understand the geometry of molecules given only their 2D

Select, Reduce, Connect This repository contains the code used for the experiments of: "Understanding Pooling in Graph Neural Networks" Setup Install

AASIST This repository provides the overall framework for training and evaluating audio anti-spoofing systems proposed in 'AASIST: Audio Anti-Spoofing

DSIG Deep Structured Instance Graph for Distilling Object Detectors Authors: Yixin Chen, Pengguang Chen, Shu Liu, Liwei Wang, Jiaya Jia. [pdf] [slide]

A framework for building (and incrementally growing) graph-based data structures used in hierarchical or DAG-structured clustering and nearest neighbor search

Permute Me Softly: Learning Soft Permutations for Graph Representations

Relation Prediction as an Auxiliary Training Objective for Knowledge Base Completion This repo provides the code for the paper Relation Prediction as

A graph neural network (GNN) model to predict protein-protein interactions (PPI) with no sample features

A geometric deep learning pipeline for predicting protein interface contacts.

A framework for evaluating Knowledge Graph Embedding Models in a fine-grained manner.