Python Cancer-imaging-research Resources

Disclaimer This code is provided for research and development use only. This code is not intended for use in clinical decision-making or for any other

93_Python_Data_Analytics_Projects This repository contains all the data analytics projects that I've worked on in python. No. Name 01 001_Cervical_Can

Sionna: An Open-Source Library for Next-Generation Physical Layer Research Sionna™ is an open-source Python library for link-level simulations of digi

xMEV, an apt exploration This is a small exploration on the xMEV opportunities between Polygon and Ethereum. It's a data analysis exercise on a few pa

Project summary This repository contains the implementation of my bachelor degree project. The aim of the project is to apply non-linear feature reduc

Understanding Bayesian Classification This repository hosts the code to reproduce the results presented in the paper On Uncertainty, Tempering, and Da

jie jie is a spatial genome aligner. This package parses true chromatin imaging signal from noise by aligning signals to a reference DNA polymer model

Research on Tabular Deep Learning For paper implementations, see the section "Papers and projects". rtdl is a PyTorch-based package providing a user-f

Contextual Attention Network: Transformer Meets U-Net Contexual attention network for medical image segmentation with state of the art results on skin

IronNet Threat Research 🕵️ Overview This repository contains IronNet's Threat Research. Research & Reporting 📝 Project Description Cobalt Strike Res

YouTube-Internal-Clients A script that discovers hidden internal clients of the YouTube (Innertube) API using bruteforce methods. The script tries cli

Underwater Light Field Retention : Neural Rendering for Underwater Imaging (UWNR) (Accepted by CVPR Workshop2022 NTIRE) Authors: Tian Ye†, Sixiang Che

Project: Text Analysis - This project aims to conduct a text information retrieval and text mining on medical research publication regarding Covid19 -

On-the-Fly Adaptation Official Pytorch Code base for On-the-Fly Test-time Adaptation for Medical Image Segmentation Paper Introduction One major probl

nflmetrics GitHub repo for Johns Hopkins Spring 2022 Sports Analytics research p

TensorFlow2-GAN Collection of tf2.0 implementations of Generative Adversarial Network varieties presented in research papers. Model architectures will

Breast-Cancer-Detection Breast cancer is the most frequent cancer among women, with around one in every 19 women at risk. The number of cases of breas

bayesian_uncertainty This is my research project for the Irving Center for Cancer Dynamics/Azizi Lab, Columbia University. In this project I build a s

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

awesome-MIM Reading list for research topics in Masked Image Modeling(MIM). We list the most popular methods for MIM, if I missed something, please su

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL.

hh_ru_research Проект реализован в учебных целях анализа рынка труда, в особенности по hh.ru Input data В качестве входных данных используются сериали

SCI-AIDE : High-fidelity Few-shot Histopathology Image Synthesis for Rare Cancer Diagnosis Pretrained Models In this work, we created synthetic tissue

PyZebrascope - an open-source Python platform for brain-wide neural activity imaging in behaving zebrafish

SubOmiEmbed: Self-supervised Representation Learning of Multi-omics Data for Cancer Type Classification

Doubly Robust Off-Policy Evaluation for Ranking Policies under the Cascade Behavior Model About This repository contains the code to replicate the syn

Posterior temperature optimized Bayesian models for inverse problems in medical imaging Max-Heinrich Laves*, Malte Tölle*, Alexander Schlaefer, Sandy

Regression Transformer Codebase to experiment with a hybrid Transformer that combines conditional sequence generation with regression . Development se

SweiNet SweiNet is an uncertainty-quantifying shear wave speed (SWS) estimator for ultrasound shear wave elasticity (SWE) imaging. SweiNet takes as in

This repository contains numerical implementation for the paper Intertemporal Pricing under Reference Effects: Integrating Reference Effects and Consumer Heterogeneity.

Welcome to AirSim AirSim is a simulator for drones, cars and more, built on Unreal Engine (we now also have an experimental Unity release). It is open

Anomaly-detection-Feature-Selection Evaluate on three different ML model for feature selection using Breast cancer data. ML models: SVM, KNN and MLP.

Breast cancer is been classified into benign tumour and malignant tumour. Logistic regression is applied in this model.

Breast Cancer Classification Model is applied on a different dataset

ResearchGate Crawler Python script for crawling ResearchGate.net papers About the script This code start crawling process by urls in start.txt and giv

LabGraph is a a Python-first framework used to build sophisticated research systems with real-time streaming, graph API, and parallelism.

Deep High Dynamic Range Imaging Benchmark This repository is the pytorch impleme

Guide for development of research code (using Anaconda Python) TL;DR: One time s

Breast-Cancer-Classification - Using SKLearn breast cancer dataset which contains 569 examples and 32 features classifying has been made with 6 different algorithms

Tutorial Repository with a minimal example for showing how to deploy training across various compute infrastructure.

1st place solution in CCF BDCI 2021 ULSEG challenge This is the source code of the 1st place solution for ultrasound image angioma segmentation task (

Breast-Cancer-Prediction Trying to predict whether the cancer is benign or malignant using REGRESSION MODELS in Python. Team Members NAME ROLL-NUMBER

FedML: A Research Library and Benchmark for Federated Machine Learning 📄 https://arxiv.org/abs/2007.13518 News 2021-02-01 (Award): #NeurIPS 2020# Fed

HealthGen: Conditional EHR Time Series Generation This repository contains the implementation of the HealthGen model, a generative model to synthesize

Pearl The Parallel Evolutionary and Reinforcement Learning Library (Pearl) is a pytorch based package with the goal of being excellent for rapid proto

coldcuts coldcuts is an R package that allows you to draw and plot automatically segmentations from 3D voxel arrays. The name is inspired by one of It

Ensemble Learning Priors Driven Deep Unfolding for Scalable Snapshot Compressive Imaging [PyTorch] Abstract Snapshot compressive imaging (SCI) can rec

Audio Source Separation is the process of separating a mixture into isolated sounds from individual sources (e.g. just the lead vocals).

This is a Kaggle competition in which we have to identify if the given lesion image is malignant or not for Melanoma which is a type of skin cancer.

[Project] Equivariant Imaging: Learning Beyond the Range Space Project about the

This repo supplements our Survey on Transformers in Medical Imaging Fahad Shamshad, Salman Khan, Syed Waqas Zamir, Muhammad Haris Khan, Munawar Hayat,

Accelerated Multi-Modal MR Imaging with Transformers Dependencies numpy==1.18.5 scikit_image==0.16.2 torchvision==0.8.1 torch==1.7.0 runstats==1.8.0 p

MT-UNet Update 2022/01/05 By another round of training based on previous weights, our model also achieved a better performance on ACDC (91.61% DSC). W

Cascaded-FCN This repository contains the pre-trained models for a Cascaded-FCN in caffe and tensorflow that segments the liver and its lesions out of

Shield: This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. Deep Learning to Improve Breast

Using Convolutional Neural Networks (CNN) for Semantic Segmentation of Breast Cancer Lesions (BRCA). Master's thesis documents. Bibliography, experiments and reports.

Google AI Open Images - Object Detection Track: Open Solution This is an open solution to the Google AI Open Images - Object Detection Track 😃 More c

A research on image classification and auto insurance claim prediction, a systematic experiments on modeling techniques and approaches

qsec Quant & Systematic Crypto Research Tools --WORK IN PROGRESS-- This repo is a collection of research tools to help in exploring and building sys

About ResearchTE automates researching by generating document with answers to given questions. Supports getting results from: Google DuckDuckGo (with

Span-ASTE-Pytorch This repository is a pytorch version that implements Ali's ACL 2021 research paper Learning Span-Level Interactions for Aspect Senti

A computational optimization project towards the goal of gerrymandering the results of a hypothetical election in the UK.

MeshGraphormer ✨ ✨ This is our research code of Mesh Graphormer. Mesh Graphormer is a new transformer-based method for human pose and mesh reconsructi

JAX Models Table of Contents About The Project Getting Started Prerequisites Installation Usage Contributing License Contact About The Project The JAX

Road feature embedding selection method Code for research paper experimentation Abstract Traffic forecasting models rely on data that needs to be sens

The dual numbers can do efficient autodiff! The codual numbers are a simple meth

Pneumonia Detection from X-Rays Project Overview In this project, you will apply the skills that you have acquired in this 2D medical imaging course t

Patient Selection for Diabetes Drug Testing Project Overview EHR data is becoming a key source of real-world evidence (RWE) for the pharmaceutical ind

Quantifying Hippocampus Volume for Alzheimer's Progression Background Alzheimer's disease (AD) is a progressive neurodegenerative disorder that result

WEB-EYES V1.0 web-eyes: OSINT tools for website research, 14 research methods ar

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.

Food recognition model using convolutional neural network & computer vision. The goal is to match or beat the DeepFood Research Paper

CellRank's reproducibility repository We believe that reproducibility is key and have made it as simple as possible to reproduce our results. Please e

Machine Learning use case in the field of Healthcare. In this project MONAI and pytorch frameworks are used for 3D Liver segmentation.

utils3D A small library of 3D related utilities used in my research. Installation Install via GitHub pip install git+https://github.com/Steve-Tod/util

A Python Bytecode Disassembler helping reverse engineers in dissecting Python binaries by disassembling and analyzing the compiled python byte-code(.pyc) files across all python versions (including Python 3.10.*)

To Design and Implement Logistic Regression to Classify Between Benign and Malignant Cancer Types, from a Database Taken From Dr. Wolberg reports his Clinic Cases.

Designed a greedy algorithm based on Markov sequential decision-making process in MATLAB/Python to optimize using Gurobi solver, the wheel size, gear shifting sequence by modeling drivetrain constraints to achieve maximum laps in a race with a 2-hour time window.

The Unsplash Dataset The Unsplash Dataset is made up of over 250,000+ contributing global photographers and data sourced from hundreds of millions of

trape (stable) v2.0 People tracker on the Internet: Learn to track the world, to avoid being traced. Trape is an OSINT analysis and research tool, whi

FMA: A Dataset For Music Analysis Michaël Defferrard, Kirell Benzi, Pierre Vandergheynst, Xavier Bresson. International Society for Music Information

Forex Data Prediction via Recurrent Neural Network Deep Sequence Modeling Research Paper Our research paper can be viewed here Installation Clone the

Deep Learning for Time Series Classification This is the companion repository for our paper titled "Deep learning for time series classification: a re

AnnotateChange Welcome to the repository of the "AnnotateChange" application. This application was created to collect annotations of time series data

CrowdCurio Time Series Annotator Library The CrowdCurio Time Series Annotation Library implements classification tasks for time series. Features Suppo

Turing Change Point Detection Benchmark Welcome to the repository for the Turing Change Point Detection Benchmark, a benchmark evaluation of change po

Pytorch EO Deep Learning for Earth Observation applications and research. 🚧 This project is in early development, so bugs and breaking changes are ex

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your machine! Motivation Would

The Top 10 Computer Vision Papers of 2021 The top 10 computer vision papers in 2021 with video demos, articles, code, and paper reference. While the w

MIMIC Code Repository The MIMIC Code Repository is intended to be a central hub for sharing, refining, and reusing code used for analysis of the MIMIC

Taguette A spin on the phrase "tag it!", Taguette is a free and open source qualitative research tool that allows users to: Import PDFs, Word Docs (.d

Documentation | Paper [JMLR] | Tutorials | Benchmarks | Examples DIG: Dive into Graphs is a turnkey library for graph deep learning research. Why DIG?

PySDM PySDM is a package for simulating the dynamics of population of particles. It is intended to serve as a building block for simulation systems mo

Bayesian Neural Networks Pytorch implementations for the following approximate inference methods: Bayes by Backprop Bayes by Backprop + Local Reparame

Reinforcement-Learning-Notebooks A collection of Reinforcement Learning algorithms from Sutton and Barto's book and other research papers implemented

ehtim (eht-imaging) Python modules for simulating and manipulating VLBI data and producing images with regularized maximum likelihood methods. This ve

motutils is a Python package for multiple object tracking research with focus on laboratory animals tracking. Features loads: MOTChallenge CSV, sleap

RLMeta rlmeta - a flexible lightweight research framework for Distributed Reinforcement Learning based on PyTorch and moolib Installation To build fro

Auto Vaidya An open source solution for creating end-end web app for employing the power of deep learning in various clinical scenarios like implant d

G-Research-Crypto-Competition Project for passing the ML exam. Dataset took from