Python Cancer-imaging-research Resources

FInite volume Neural Network (FINN) This repository contains the PyTorch code for models, training, and testing, and Python code for data generation t

Naivebayes text classifcation model for cancer and noncancer documents Author: Alex King Purpose Requirements/files included How to use 1. Purpose The

fmi Adding additional functionality to fastai's medical imaging module To learn more about medical imaging using Fastai you can view my blog Install g

pyradiomics v3.0.1 Build Status Linux macOS Windows Radiomics feature extraction in Python This is an open-source python package for the extraction of

gpytoolbox This repo is a work in progress and contains general utility functions I have needed to code while trying to work on geometry process resea

InfiniteBoost Code for a paper InfiniteBoost: building infinite ensembles with gradient descent (arXiv:1706.01109). A. Rogozhnikov, T. Likhomanenko De

Welcome to AirSim AirSim is a simulator for drones, cars and more, built on Unreal Engine (we now also have an experimental Unity release). It is open

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

Medical Open Network for AI MONAI is a PyTorch-based, open-source framework for deep learning in healthcare imaging, part of PyTorch Ecosystem. Its am

Clinica Software platform for clinical neuroimaging studies Homepage | Documentation | Paper | Forum | See also: AD-ML, AD-DL ClinicaDL About The Proj

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

Effect of Deep Transfer and Multi task Learning on Sperm Abnormality Detection Introduction This repository includes codes and models of "Effect of De

Tips for Writing a Research Paper using LaTeX

ShallowSeismicImaging Tools to imaging the shallow seismic structure, above 10 km, based on the ZH ratio measured from the ambient seismic noise, and

dumpulator Note: This is a work-in-progress prototype, please treat it as such. An easy-to-use library for emulating code in minidump files. Example T

CleanRL (Clean Implementation of RL Algorithms) CleanRL is a Deep Reinforcement Learning library that provides high-quality single-file implementation

[arXiv] The main motivation of the SHIFT15M project is to provide a dataset that contains natural dataset shifts collected from a web service IQON, wh

Built with ❤️ by Sam Showalter Contents Overview Installation Dependencies Usage Scripts Standard Execution Environment Development Environment Benchm

disentanglement_lib disentanglement_lib is an open-source library for research on learning disentangled representation. It supports a variety of diffe

Vulkan Light Bakary MSU Graphics Group Student's Diploma Project Treefonov Andrey [GitHub] [LinkedIn] Project Goal The goal of the project is to imple

AOS: Airborne Optical Sectioning Airborne Optical Sectioning (AOS) is a wide synthetic-aperture imaging technique that employs manned or unmanned airc

Metaflow Metaflow is a human-friendly Python/R library that helps scientists and engineers build and manage real-life data science projects. Metaflow

UNet++: A Nested U-Net Architecture for Medical Image Segmentation UNet++ is a new general purpose image segmentation architecture for more accurate i

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras This tutorial shows how to use Keras library to build deep ne

Sparse deconvolution Python v0.3.0 Official Python implementation of the 'Sparse deconvolution', and the CPU (NumPy) and GPU (CuPy) calculation backen

AnimalAI 3 AAI supports interdisciplinary research to help better understand human, animal, and artificial cognition. It aims to support AI research t

Tweet harvester Python script to scrape, collect, and/or harvest tweets with the Twitter API V2 Academic Research Product Track. Important note: In or

NLOS-OT Official implementation of NLOS-OT: Passive Non-Line-of-Sight Imaging Using Optimal Transport (IEEE TIP, accepted) Description In this reposit

AutomaticUSnavigation Investigating automatic navigation towards standard US views integrating MARL with the virtual US environment developed in CT2US

jaxdf - JAX-based Discretization Framework Overview | Example | Installation | Documentation ⚠️ This library is still in development. Breaking changes

Equivariant Imaging: Learning Beyond the Range Space Equivariant Imaging: Learning Beyond the Range Space Dongdong Chen, Julián Tachella, Mike E. Davi

A curated list of the latest breakthroughs in AI by release date with a clear video explanation, link to a more in-depth article, and code

meddlr Getting Started Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems. Installation To av

Rater Scoring Modeling Tool Introduction Automated scoring of written and spoken test responses is a growing field in educational natural language pro

fly2p Tools for analyzing two-photon (2p) imaging data collected with Vidrio Scanimage software and micromanger. Loading scanimage data relies on scan

NSE-timeseries-form-CSV-file-creator-and-SQL-appender- This creates a ohlc timeseries from downloaded CSV files from National Stock Exchange India (NS

logdata-anomaly-miner This tool parses log data and allows to define analysis pipelines for anomaly detection. It was designed to run the analysis wit

waltlabtools A collection of tools for biomedical research assay analysis in Python. Key Features Analysis for assays such as digital ELISA, including

TiKick 1.Introduction Learning-based agent for Google Research Football Code accompanying the paper "TiKick: Towards Playing Multi-agent Football Full

Map single-cell transcriptomes to copy number evolutionary trees. Check out the tutorial for more information. Installation $ pip install scatrex SCA

A lightweight and powerful python module for scientific analysis and visualization of 3d objects.

T5X T5X is a modular, composable, research-friendly framework for high-performance, configurable, self-service training, evaluation, and inference of

FIW Data Development Kit Table of Contents Introduction Families In the Wild Database Publications Organization To Do License Getting Involved Introdu

Data and Code for paper Outlining and Filling: Hierarchical Query Graph Generation for Answering Complex Questions over Knowledge Graph is available f

Neural Nano-Optics for High-quality Thin Lens Imaging Project Page | Paper | Data Ethan Tseng, Shane Colburn, James Whitehead, Luocheng Huang, Seung-H

Non-Imaging Transient Reconstruction And TEmporal Search (NITRATES) This repo contains the full NITRATES pipeline for maximum likelihood-driven discov

AI arxiver a discord bot that pulls the latest or most relevant research papers from arxiv.org invite link : Arxiver bot link works in progress Usage

Pytorch Implementation of PointNet and PointNet++ This repo is implementation for PointNet and PointNet++ in pytorch. Update 2021/03/27: (1) Release p

Seaflowpy A Python package for SeaFlow flow cytometer data. Table of Contents Install Read EVT/OPP/VCT Files Command-line Interface Configuration Inte

DeepMind Research This repository contains implementations and illustrative code to accompany DeepMind publications. Along with publishing papers to a

Federated Research Federated Research is a collection of research projects related to Federated Learning and Federated Analytics. Federated learning i

MedMNIST Project (Website) | Dataset (Zenodo) | Paper (arXiv) | MedMNIST v1 (ISBI'21) Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bili

Group members information Member 1: Lixue Liang Member 2: Yuet Lee Chan Member 3: Xinruo Zhang Member 4: Yifei Han User Manual Generate Attack Packets

ngEHTexplorer An interactive tool with which to explore the possible imaging performance of candidate ngEHT architectures. Welcome! ngEHTexplorer is a

MultiMix This repository contains the implementation of MultiMix. Our publications for this project are listed below: "MultiMix: Sparingly Supervised,

Auto-Research A no-code utility to generate a detailed well-cited survey with topic clustered sections (draft paper format) and other interesting arti

Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder structure with deep supervision (—𝘜𝘕𝘦𝘵++). Built in TensorFlow 2.5. Configured for voxel-level clinically significant prostate cancer detection in multi-channel 3D bpMRI scans.

Research PACS on AWS Challenge to solve Solution presentation Deploy the solution Further reading Releases License Challenge to solve The rise of new

Accelerated DL & RL PyTorch framework for Deep Learning research and development. It was developed with a focus on reproducibility, fast experimentati

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

OSS-Net: Memory Efficient High Resolution Semantic Segmentation of 3D Medical Data Christoph Reich, Tim Prangemeier, Özdemir Cetin & Heinz Koeppl | Pr

MMF is a modular framework for vision and language multimodal research from Facebook AI Research. MMF contains reference implementations of state-of-t

Bug Bounty Bot A telegram bot with commands to simplify bug bounty tasks Installation Use Road Map Installation BugBountyBot is open-source so you can

smilelogging Python logging package for easy reproducible experimenting in research. Why you may need this package This project is meant to provide an

Description DeepRTS is a high-performance Real-TIme strategy game for Reinforcement Learning research. It is written in C++ for performance, but provi

starfish: scalable pipelines for image-based transcriptomics starfish is a Python library for processing images of image-based spatial transcriptomics

简体中文 | English News [2021-10-12] PaddleNLP 2.1版本已发布！新增开箱即用的NLP任务能力、Prompt Tuning应用示例与生成任务的高性能推理！ 🎉 更多详细升级信息请查看Release Note。 [2021-08-22]《千言：面向事实一致性的生

Description Simple utility to search for interesting preferences in iDevices. Installation python3 -m pip install -U --user cfprefsmon Example In this

Fairseq(-py) is a sequence modeling toolkit that allows researchers and developers to train custom models for translation, summarization, language mod

img2texture Command line utility for converting images to seamless tiles. The resulting tiles can be used as textures in games, compositing and 3D mod

Lale is a Python library for semi-automated data science. Lale makes it easy to automatically select algorithms and tune hyperparameters of pipelines that are compatible with scikit-learn, in a type-safe fashion.

Open Optimizers Repository for open research on optimizers. This is a test in sharing research/exploration as it happens. If you use anything from thi

Tensor2Tensor Tensor2Tensor, or T2T for short, is a library of deep learning models and datasets designed to make deep learning more accessible and ac

Serverless deployment on IBM Cloud Code Engine that uses the Lithops Framework to process images in parallel

Research 发布基于飞桨的前沿研究工作，包括CV、NLP、KG、STDM等领域的顶会论文和比赛冠军模型。 目录 计算机视觉(Computer Vision) 自然语言处理(Natrual Language Processing) 知识图谱(Knowledge Graph) 时空数据挖掘(Spa

International Space Station data with Python research 🌎 Plotting ISS trajectory, calculating the velocity over the earth and more. Plotting trajector

pySPEDAS pySPEDAS is an implementation of the SPEDAS framework for Python. The Space Physics Environment Data Analysis Software (SPEDAS) framework is

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

A repository of links with advice related to grad school applications, research, phd etc

OG-SPACE Introduction Optimized Gillespie algorithm for simulating Stochastic sPAtial models of Cancer Evolution (OG-SPACE) is a computational framewo

Research 发布基于飞桨的前沿研究工作，包括CV、NLP、KG、STDM等领域的顶会论文和比赛冠军模型。 目录 计算机视觉(Computer Vision) 自然语言处理(Natrual Language Processing) 知识图谱(Knowledge Graph) 时空数据挖掘(Spa

pycls pycls is an image classification codebase, written in PyTorch. It was originally developed for the On Network Design Spaces for Visual Recogniti

DeepSeaTreasure Environment Installation In order to get started with this environment, you can install it using the following command: python3 -m pip

OpenCV-Multiple-Object-Tracking Python is version 3.6.7 to install opencv: pip uninstall opecv-python pip uninstall opencv-contrib-python pip install

tosem2021-personality-rep-package Replication package for the manuscript "Using Personality Detection Tools for Software Engineering Research: How Far

SlideGraph+: Whole Slide Image Level Graphs to Predict HER2 Status in Breast Cancer A novel graph neural network (GNN) based model (termed SlideGraph+

Vision-and-Language Navigation in Continuous Environments (VLN-CE) Project Website — VLN-CE Challenge — RxR-Habitat Challenge Official implementations

Google-Sticker-Mashup-Research Research on how Gboard Stickers work. Contribute Contributing is nice, and you will be listed below for contributing. C

Useful materials and tutorials for 110-1 NTU DBME5028 (Application of Deep Learning in Medical Imaging)

A Python library for choreographing your machine learning research.

Kaolin: A Pytorch Library for Accelerating 3D Deep Learning Research Overview NVIDIA Kaolin library provides a PyTorch API for working with a variety

A 3D multi-modal medical image segmentation library in PyTorch We strongly believe in open and reproducible deep learning research. Our goal is to imp

Small Lesion Segmentation in Brain MRIs with Subpixel Embedding PyTorch implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedd

motor-system Introduction A code copied from google-research which named motion-imitation was rewrited with PyTorch. More details can get from this pr

Manifold-SCA Research Artifact of USENIX Security 2022 Paper: Automated Side Channel Analysis of Media Software with Manifold Learning The repo is org

MiniHack the Planet: A Sandbox for Open-Ended Reinforcement Learning Research

AlignShift NEW: Code for our new MICCAI'21 paper "Asymmetric 3D Context Fusion for Universal Lesion Detection" will also be pushed to this repository

Brain Tokyo Workshop 🧠 🗼 This repo contains research materials released by members of the Google Brain team in Tokyo. Past Projects Weight Agnostic

📫 Paper Code Collection (MSRA DKI Group) This repo hosts multiple open-source codes of the Microsoft Research Asia DKI Group. You could find the corr

A Non-Autoregressive Transformer based TTS, supporting a family of SOTA transformers with supervised and unsupervised duration modelings. This project grows with the research community, aiming to achieve the ultimate TTS.