Python Cancer-imaging-research Resources

Lingvo is a framework for building neural networks in Tensorflow, particularly sequence models.

Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications

Wiki and tutorials | Documentation | Getting Started | Algorithms | Design | FAQ Distiller is an open-source Python package for neural network compres

GluonMM is a library of transformer models for computer vision and multi-modality research. It contains reference implementations of widely adopted baseline models and also research work from Amazon Research.

Dense Deep Unfolding Network with 3D-CNN Prior for Snapshot Compressive Imaging, ICCV2021 [PyTorch Code]

Retina Blood Vessels Segmentation This is an implementation of the research paper "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional

SenseNet is a sensorimotor and touch simulator for deep reinforcement learning research

Pillow Python Imaging Library (Fork) Pillow is the friendly PIL fork by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lund

This repository contains code released by Google Research.

DAG Amendment for Inverse Control of Parametric Shapes This repository is the official Blender implementation of the paper "DAG Amendment for Inverse

Keval Keval allows you to call arbitrary Windows kernel-mode functions from user mode, even (and primarily) on another machine. The user mode portion

Scitizen - Help scientific research for the benefit of mankind and humanity 🔬 Scitizen has been built from the ground up to give everyone the possibi

bartpy Python bindings for BART. Overview This repo contains code to generate an updated Python wrapper for the Berkeley Advance Reconstruction Toolbo

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

BEM(building energy model)-SIM-APP The is a web app presenting my research in BEM(building energy model) calibration. You can play around with some pa

Mask-RCNN on Mycobacterium tuberculosis This is an example of object detection on Mycobacterium Tuberculosis using Mask RCNN. Implement of Mask R-CNN

YoutubeTags Python Library to Extract youtube video Tags without Youtube API Installation pip install YoutubeTags Example import YoutubeTags from Yout

Sound event detection aims at processing the continuous acoustic signal and converting it into symbolic descriptions of the corresponding sound events present at the auditory scene.

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

Twitter Developer Platform: Using Twitter APIs for Academic Research All the scripts require a config.ini file in which the keys are put. There is a t

pedalboard is a Python library for adding effects to audio. It supports a number of common audio effects out of the box, and also allows the use of VST3® and Audio Unit plugin formats for third-party effects.

HITNET-Stereo-Depth-estimation Python scripts for performing stereo depth estimation using the HITNET Tensorflow model from Google Research. Stereo de

Megatron (1 and 2) is a large, powerful transformer developed by the Applied Deep Learning Research team at NVIDIA.

sssegmentation is a general framework for our research on strongly supervised semantic segmentation.

PyNIF3D is an open-source PyTorch-based library for research on neural implicit functions (NIF)-based 3D geometry representation. It aims to accelerate research by providing a modular design that allows for easy extension and combination of NIF-related components, as well as readily available paper implementations and dataset loaders.

gym-recsys: Customizable RecSys Simulator for OpenAI Gym Installation | How to use | Examples | Citation This package describes an OpenAI Gym interfac

FastReID is a research platform that implements state-of-the-art re-identification algorithms.

What is this fork of Megatron-LM and Megatron-DeepSpeed This is a detached fork of https://github.com/microsoft/Megatron-DeepSpeed, which in itself is

SG-NLP Machine learning models from Singapore's natural language processing (NLP) research community. sgnlp is a Python package that allows you to eas

ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more

Scenic Scenic is a codebase with a focus on research around attention-based models for computer vision. Scenic has been successfully used to develop c

Deep Optics for Single-shot High-dynamic-range Imaging Code associated with the paper "Deep Optics for Single-shot High-dynamic-range Imaging" CVPR, 2

Multi-level-colonoscopy-malignant-tissue-detection-with-adversarial-CAC-UNet Implementation detail for our paper "Multi-level colonoscopy malignant ti

chembl_downloader Don't worry about downloading/extracting ChEMBL or versioning - just use chembl_downloader to write code that knows how to download

This repository is a toolkit to do machine learning for programming languages. It implements tokenization, dataset preprocessing, model training and m

NeuralCompression is a Python repository dedicated to research of neural networks that compress data. The repository includes tools such as JAX-based entropy coders, image compression models, video compression models, and metrics for image and video evaluation.

Graph Wavelet Neural Network ⠀⠀ A PyTorch implementation of Graph Wavelet Neural Network (ICLR 2019). Abstract We present graph wavelet neural network

APPNP ⠀ A PyTorch implementation of Predict then Propagate: Graph Neural Networks meet Personalized PageRank (ICLR 2019). Abstract Neural message pass

CapsGNN ⠀⠀ A PyTorch implementation of Capsule Graph Neural Network (ICLR 2019). Abstract The high-quality node embeddings learned from the Graph Neur

Clockwork VAEs in JAX/Flax Implementation of experiments in the paper Clockwork Variational Autoencoders (project website) using JAX and Flax, ported

A collection of research papers and software related to explainability in graph machine learning.

NCRF Prerequisites Data Whole slide images Annotations Patch images Model Training Testing Tissue mask Probability map Tumor localization FROC evaluat

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast

UNet for segmenting salt deposits from seismic images with PyTorch. General We, tugstugi and xuyuan, have participated in the Kaggle competition TGS S

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

A selection of State Of The Art research papers (and code) on human trajectory prediction (forecasting). Papers marked with [W] are workshop papers.

Mava: a research framework for distributed multi-agent reinforcement learning Table of Contents Overview Getting Started Supported Environments System

Piotr: Pythonic IoT exploitation and Research Introduction to Piotr Piotr is an emulation helper for Qemu that provides a convenient way to create, sh

Spectral Tensor Train Parameterization of Deep Learning Layers This repository is the official implementation of our AISTATS 2021 paper titled "Spectr

Introduction TFace: A trusty face recognition research platform developed by Tencent Youtu Lab. It provides a high-performance distributed training fr

Flexible interface for high performance research using SOTA Transformers leveraging Pytorch Lightning, Transformers, and Hydra. What is Lightning Tran

What is nnDetection? Simultaneous localisation and categorization of objects in medical images, also referred to as medical object detection, is of hi

DeepCDR Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network This work has been accepted to ECCB2020 and was also published in the

Products Recognition 介绍 商品识别，围绕在复杂的商场零售场景中，识别出货架图像中的商品信息。主要组成部分： 重复图像检测。【更新进度 4/10】 图像拼接。【更新进度 0/10】 目标检测。【更新进度 0/10】 商品识别。【更新进度 1/10】 OCR。【更新进度 1/10】

Pretrained SOTA Deep Learning models, callbacks and more for research and production with PyTorch Lightning and PyTorch

FINN.no Recommender Systems Slate Dataset This repository accompany the paper "Dynamic Slate Recommendation with Gated Recurrent Units and Thompson Sa

Megaverse Megaverse is a new 3D simulation platform for reinforcement learning and embodied AI research. The efficient design of the engine enables ph

The `rtdl` library + The official implementation of the paper "Revisiting Deep Learning Models for Tabular Data"

Getting started with the Twitter API v2 for academic research Welcome to this '101 course' on getting started with academic research using the Twitter

🐸 Identify anything. pyWhat easily lets you identify emails, IP addresses, and more. Feed it a .pcap file or some text and it'll tell you what it is! 🧙‍♀️

An integration of several popular automatic augmentation methods, including OHL (Online Hyper-Parameter Learning for Auto-Augmentation Strategy) and AWS (Improving Auto Augment via Augmentation Wise Weight Sharing) by Sensetime Research.

Python Programming Puzzles (P3) This repo contains a dataset of python programming puzzles which can be used to teach and evaluate an AI's programming

PaperWhisperer PaperWhisperer is a Python application that keeps you up-to-date with research papers. How? It retrieves the latest articles from arXiv

Vid2Doppler: Synthesizing Doppler Radar Data from Videos for Training Privacy-Preserving Activity Recognition This is the research repository for Vid2

The Internet Archive Research Assistant - Daily search Internet Archive for new items matching your keywords

MeshTransformer ✨ This is our research code of End-to-End Human Pose and Mesh Reconstruction with Transformers. MEsh TRansfOrmer is a simple yet effec

TSForecasting This repository contains the implementations related to the experiments of a set of publicly available datasets that are used in the tim

Microsoft contributing libraries, tools, recipes, sample codes and workshop contents for machine learning & deep learning.

Image Crop Analysis This is a repo for the code used for reproducing our Image Crop Analysis paper as shared on our blog post. If you plan to use this

Asymmetric Tri-training for Debiasing Missing-Not-At-Random Explicit Feedback About This repository accompanies the real-world experiments conducted i

Python Research Framework

MMF is a modular framework for vision and language multimodal research from Facebook AI Research. MMF contains reference implementations of state-of-t

Fairseq(-py) is a sequence modeling toolkit that allows researchers and developers to train custom models for translation, summarization, language mod

QuickAI is a Python library that makes it extremely easy to experiment with state-of-the-art Machine Learning models.

QuickAI is a Python library that makes it extremely easy to experiment with state-of-the-art Machine Learning models.

FedGraphNN: A Federated Learning System and Benchmark for Graph Neural Networks A Research-oriented Federated Learning Library and Benchmark Platform

pihole-antitelemetry Research shows Google collects 20x more data from Android than Apple collects from iOS. Block both using these pihole lists. Proj

This page contains a list of papers on multi-task learning for computer vision. Please create a pull request if you wish to add anything. If you are interested, consider reading our recent survey paper.

Welcome to MedicalTorch MedicalTorch is an open-source framework for PyTorch, implementing an extensive set of loaders, pre-processors and datasets fo

Awesome-NLP-Research (ANLP)

a new software framework to facilitate scalable federated learning research.

CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT CheXbert is an accurate, automated dee

Domain Generalization for Medical Imaging Classification with Linear Dependency Regularization The code release of paper 'Domain Generalization for Me

leaf-audio-pytorch Pytorch port of Google Research's LEAF Audio paper published at ICLR 2021. This port is not completely finished, but the Leaf() fro

README TabNet : Attentive Interpretable Tabular Learning This is a pyTorch implementation of Tabnet (Arik, S. O., & Pfister, T. (2019). TabNet: Attent

Qlib is an AI-oriented quantitative investment platform, which aims to realize the potential, empower the research, and create the value of AI technol

Open Semantic Search https://opensemanticsearch.org Integrated search server, ETL framework for document processing (crawling, text extraction, text a

teleRAT Python based RAT that uses Telegram for sending commands and receiving data to and from a victim computer. Setup.py Insert your API key into t

CourtListener Started in 2009, CourtListener.com is the main initiative of Free Law Project. The goal of CourtListener.com is to provide high quality

SyscallExtractorAnalyzer This script will pull and analyze syscalls in given application(s) allowing for easier security research purposes Goals Teach

PySwarms is an extensible research toolkit for particle swarm optimization (PSO) in Python. It is intended for swarm intelligence researchers, practit

Dopamine Dopamine is a research framework for fast prototyping of reinforcement learning algorithms. It aims to fill the need for a small, easily grok

Lucid Lucid is a collection of infrastructure and tools for research in neural network interpretability. We're not currently supporting tensorflow 2!

AI Explainability 360 (v0.2.1) The AI Explainability 360 toolkit is an open-source library that supports interpretability and explainability of datase

Algorithms and Data Structures (ands) Introduction This project was created for personal use mostly while studying for an exam (starting in the month

This is a TensorFlow implementation of an arbitrary order (=2) Factorization Machine based on paper Factorization Machines with libFM. It supports: d

[Due to the time taken @ uni, work + hell breaking loose in my life, since things have calmed down a bit, will continue commiting!!!] [By the way, I'm

NN Template Generic template to bootstrap your PyTorch project. Click on Use this Template and avoid writing boilerplate code for: PyTorch Lightning,

ReproZip ReproZip is a tool aimed at simplifying the process of creating reproducible experiments from command-line executions, a frequently-used comm