Python Genome-scale-models Resources

BIG-bench 🪑 The Beyond the Imitation Game Benchmark (BIG-bench) will be a collaborative benchmark intended to probe large language models, and extrap

Algo-ScriptML Python implementations of some of the fundamental Machine Learning models and algorithms from scratch. The goal of this project is not t

Create Django App 💛 We're a Django project starter on steroids! One-line command to create a Django app with all the dependencies auto-installed AND

Data Augmentation using Pre-trained Transformer Models Code associated with the Data Augmentation using Pre-trained Transformer Models paper Code cont

MMdnn MMdnn is a comprehensive and cross-framework tool to convert, visualize and diagnose deep learning (DL) models. The "MM" stands for model manage

hsmmlearn hsmmlearn is a library for unsupervised learning of hidden semi-Markov models with explicit durations. It is a port of the hsmm package for

skggm : Gaussian graphical models using the scikit-learn API In the last decade, learning networks that encode conditional independence relationships

Netron is a viewer for neural network, deep learning and machine learning models. Netron supports ONNX (.onnx, .pb, .pbtxt), Keras (.h5, .keras), Tens

AI Explainability 360 (v0.2.1) The AI Explainability 360 toolkit is an open-source library that supports interpretability and explainability of datase

======== FairML: Auditing Black-Box Predictive Models FairML is a python toolbox auditing the machine learning models for bias. Description Predictive

Alibi is an open source Python library aimed at machine learning model inspection and interpretation. The focus of the library is to provide high-qual

Translated in 🇰🇷 Korean/ Ludwig is a toolbox that allows users to train and test deep learning models without the need to write code. It is built on

tensorlm Generate Shakespeare poems with 4 lines of code. Installation tensorlm is written in / for Python 3.4+ and TensorFlow 1.1+ pip3 install tenso

torchvision The torchvision package consists of popular datasets, model architectures, and common image transformations for computer vision. Installat

Time series analysis today is an important cornerstone of quantitative science in many disciplines, including natural and life sciences as well as eco

pyGAM Generalized Additive Models in Python. Documentation Official pyGAM Documentation: Read the Docs Building interpretable models with Generalized

Highly interpretable, sklearn-compatible classifier based on decision rules This is a scikit-learn compatible wrapper for the Bayesian Rule List class

[Due to the time taken @ uni, work + hell breaking loose in my life, since things have calmed down a bit, will continue commiting!!!] [By the way, I'm

OpenChat is opensource chatting framework for generative models.

A Python library that helps data scientists to infer causation rather than observing correlation.

django-wiki Django support The below table explains which Django versions are supported. Release Django Upgrade from 0.7.x 2.2, 3.0, 3.1 0.5 or 0.6 0.

Website • Docs • Blog • Twitter • Chat (Community & Support) • Tutorial • Mailing List Data Version Control or DVC is an open-source tool for data sci

Gino-Admin Docs (state: in process): Gino-Admin docs Play with Demo (current master 0.2.3) Gino-Admin demo (login: admin, pass: 1234) Admin

FastAPI Model Server Skeleton Serving machine learning models production-ready, fast, easy and secure powered by the great FastAPI by Sebastián Ramíre

improved-diffusion This is the codebase for Improved Denoising Diffusion Probabilistic Models. Usage This section of the README walks through how to t

Model search (MS) is a framework that implements AutoML algorithms for model architecture search at scale. It aims to help researchers speed up their exploration process for finding the right model architecture for their classification problems (i.e., DNNs with different types of layers).

BitPack is a practical tool that can efficiently save quantized neural network models with mixed bitwidth.

This repository provides the source code for training and testing state-of-the-art click-based interactive segmentation models with the official PyTorch implementation

ForecastGA is a tool that combines a couple of popular libraries, Atspy and googleanalytics, with a few enhancements.

NFNet Pytorch Implementation This repo contains pretrained NFNet models F0-F6 with high ImageNet accuracy from the paper High-Performance Large-Scale

FastAPI Model Server Skeleton Serving machine learning models production-ready, fast, easy and secure powered by the great FastAPI by Sebastián Ramíre

MatchZoo Facilitating the design, comparison and sharing of deep text matching models. MatchZoo 是一个通用的文本匹配工具包，它旨在方便大家快速的实现、比较、以及分享最新的深度文本匹配模型。 🔥 News

Headliner Headliner is a sequence modeling library that eases the training and in particular, the deployment of custom sequence models for both resear

Sockeye This package contains the Sockeye project, an open-source sequence-to-sequence framework for Neural Machine Translation based on Apache MXNet

(Framework for Adapting Representation Models) What is it? FARM makes Transfer Learning with BERT & Co simple, fast and enterprise-ready. It's built u

Fast-Bert New - Learning Rate Finder for Text Classification Training (borrowed with thanks from https://github.com/davidtvs/pytorch-lr-finder) Suppor

This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

ParlAI (pronounced “par-lay”) is a python framework for sharing, training and testing dialogue models, from open-domain chitchat, to task-oriented dia

Spark NLP: State of the Art Natural Language Processing Spark NLP is a Natural Language Processing library built on top of Apache Spark ML. It provide

State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 🤗 Transformers provides thousands of pretrained models to perform tasks o

The open-source tool for building high-quality datasets and computer vision models. Website • Docs • Try it Now • Tutorials • Examples • Blog • Commun

cochlea cochlea is a collection of inner ear models. All models are easily accessible as Python functions. They take sound signal as input and return

⚠️ Checkout develop branch to see what is coming in pyannote.audio 2.0: a much smaller and cleaner codebase Python-first API (the good old pyannote-au

NO LONGER MAINTAINED This repository is no longer maintained due to lack of time. You might check out the fork https://github.com/mrevutskyi/flask-res

[Preprint] "TransGAN: Two Transformers Can Make One Strong GAN", Yifan Jiang, Shiyu Chang, Zhangyang Wang

Python scripts to detect faces using Python with the BlazeFace Tensorflow Lite models. Tested on Windows 10, Tensorflow 2.4.0 (Python 3.8).

⚡ Create CRUD routes with lighting speed ⚡ A dynamic FastAPI router that automatically creates CRUD routes for your models Documentation: https://fast

ec2-spot-converter This tool converts existing AWS EC2 instances back and forth between On-Demand and 'persistent' Spot billing models while preservin

Generate 3D meshes based on SDFs (signed distance functions) with a dirt simple Python API.

PyTorch Tabular aims to make Deep Learning with Tabular data easy and accessible to real-world cases and research alike.

The DeepSparse Engine is a CPU runtime that delivers unprecedented performance by taking advantage of natural sparsity within neural networks to reduce compute required as well as accelerate memory bound workloads. It is focused on model deployment and scaling machine learning pipelines, fitting seamlessly into your existing deployments as an inference backend.

InfoBERT: Improving Robustness of Language Models from An Information Theoretic Perspective This is the official code base for our ICLR 2021 paper

This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data.

GAP-text2SQL: Learning Contextual Representations for Semantic Parsing with Generation-Augmented Pre-Training Code and model from our AAAI 2021 paper

MatchZoo Facilitating the design, comparison and sharing of deep text matching models. MatchZoo 是一个通用的文本匹配工具包，它旨在方便大家快速的实现、比较、以及分享最新的深度文本匹配模型。 🔥 News

Headliner Headliner is a sequence modeling library that eases the training and in particular, the deployment of custom sequence models for both resear

Sockeye This package contains the Sockeye project, an open-source sequence-to-sequence framework for Neural Machine Translation based on Apache MXNet

(Framework for Adapting Representation Models) What is it? FARM makes Transfer Learning with BERT & Co simple, fast and enterprise-ready. It's built u

Fast-Bert New - Learning Rate Finder for Text Classification Training (borrowed with thanks from https://github.com/davidtvs/pytorch-lr-finder) Suppor

This repository contains custom pipes and models related to using spaCy for scientific documents. In particular, there is a custom tokenizer that adds

ParlAI (pronounced “par-lay”) is a python framework for sharing, training and testing dialogue models, from open-domain chitchat, to task-oriented dia

Haystack is an end-to-end framework for Question Answering & Neural search that enables you to ... ... ask questions in natural language and find gran

Spark NLP: State of the Art Natural Language Processing Spark NLP is a Natural Language Processing library built on top of Apache Spark ML. It provide

State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 🤗 Transformers provides thousands of pretrained models to perform tasks o

The open-source tool for building high-quality datasets and computer vision models. Website • Docs • Try it Now • Tutorials • Examples • Blog • Commun

Translated in 🇰🇷 Korean/ Ludwig is a toolbox that allows users to train and test deep learning models without the need to write code. It is built on

Quick Links: Installation | Documentation | WWDC 2019 | WWDC 2018 Turi Create Check out our talks at WWDC 2019 and at WWDC 2018! Turi Create simplifie

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate. Website • Key Features • How To Use • Docs •

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

Apache Spark Spark is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an op

NO LONGER MAINTAINED This repository is no longer maintained due to lack of time. You might check out the fork https://github.com/mrevutskyi/flask-res

⚡ Create CRUD routes with lighting speed ⚡ A dynamic FastAPI router that automatically creates CRUD routes for your models Documentation: https://fast

Cache Machine Cache Machine provides automatic caching and invalidation for Django models through the ORM. For full docs, see https://cache-machine.re

Django Lifecycle Hooks This project provides a @hook decorator as well as a base model and mixin to add lifecycle hooks to your Django models. Django'

Django Cleanup Features The django-cleanup app automatically deletes files for FileField, ImageField and subclasses. When a FileField's value is chang

Django Countries A Django application that provides country choices for use with forms, flag icons static files, and a country field for models. Insta

django-money A little Django app that uses py-moneyed to add support for Money fields in your models and forms. Django versions supported: 1.11, 2.1,

PORORO: Platform Of neuRal mOdels for natuRal language prOcessing pororo performs Natural Language Processing and Speech-related tasks. It is easy to

Flask App Builder Simple and rapid application development framework, built on top of Flask. includes detailed security, auto CRUD generation for your

The Falcon Web Framework Falcon is a reliable, high-performance Python web framework for building large-scale app backends and microservices. It encou

Django Django is a high-level Python Web framework that encourages rapid development and clean, pragmatic design. Thanks for checking it out. All docu

GPT-NeoX An implementation of model parallel GPT-3-like models on GPUs, based on the DeepSpeed library. Designed to be able to train models in the hun

DALL-E in Mesh-Tensorflow [WIP] Open-AI's DALL-E in Mesh-Tensorflow. If this is similarly efficient to GPT-Neo, this repo should be able to train mode

WILDS is a benchmark of in-the-wild distribution shifts spanning diverse data modalities and applications, from tumor identification to wildlife monitoring to poverty mapping.

⚡ Create CRUD routes with lighting speed ⚡ A dynamic FastAPI router that automatically creates CRUD routes for your models

OpenViDial This repo contains downloading instructions for the OpenViDial dataset in 《OpenViDial: A Large-Scale, Open-Domain Dialogue Dataset with Vis

Reranker is a lightweight, effective and efficient package for training and deploying deep languge model reranker in information retrieval (IR), question answering (QA) and many other natural language processing (NLP) pipelines. The training procedure follows our ECIR paper Rethink Training of BERT Rerankers in Multi-Stage Retrieval Pipeline using a localized constrastive esimation (LCE) loss.

- 基于标题的大规模商品实体检索top1 一、任务介绍 CCKS 2020：基于标题的大规模商品实体检索，任务为对于给定的一个商品标题，参赛系统需要匹配到该标题在给定商品库中的对应商品实体。 输入：输入文件包括若干行商品标题。 输出：输出文本每一行包括此标题对应的商品实体，即给定知识库中商品 ID，

huggingface_hub Client library to download and publish models and other files on the huggingface.co hub Do you have an open source ML library? We're l

nnprof Introduction nnprof is a profile tool for pytorch neural networks. Features multi profile mode: nnprof support 4 profile mode: Layer level, Ope

Animesion An end-to-end framework for anime-related object classification, detection, segmentation, and other models. Update: 01/22/2020. Due to time-

tflite2tensorflow Generate saved_model, tfjs, tf-trt, EdgeTPU, CoreML, quantized tflite and .pb from .tflite. 1. Supported Layers No. TFLite Layer TF

NeMo: Neural Mesh Models of Contrastive Features for Robust 3D Pose Estimation [ICLR-2021] Release Notes The offical PyTorch implementation of NeMo, p

VizGradCAM VizGradCam is the fastest way to visualize GradCAM in Keras models. GradCAM helps with providing visual explainability of trained models an

Contextual Non-Local Alignment over Full-Scale Representation for Text-Based Person Search This is an implementation for our paper Contextual Non-Loca

Description: This is the official implementation of our AAAI-21 accepted paper Label Confusion Learning to Enhance Text Classification Models. The str

MonkeyLearn API for Python Official Python client for the MonkeyLearn API. Build and run machine learning models for language processing from your Pyt

django-wordpress Models and views for reading a WordPress database. Compatible with WordPress version 3.5+. django-wordpress is a project of ISL and t

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

The Falcon Web Framework Falcon is a reliable, high-performance Python web framework for building large-scale app backends and microservices. It encou