Python Genome-scale-models Resources

MultiMAE: Multi-modal Multi-task Masked Autoencoders Roman Bachmann*, David Mizrahi*, Andrei Atanov, Amir Zamir Website | arXiv | BibTeX Official PyTo

Bilateral Denoising Diffusion Models (BDDMs) This is the official PyTorch implementation of the following paper: BDDM: BILATERAL DENOISING DIFFUSION M

DEEP LEARNING FOR CODERS WITH FASTAI AND PYTORCH The repository contains a list of the projects which I have worked on while reading the book Deep Lea

ExtEnD: Extractive Entity Disambiguation This repository contains the code of ExtEnD: Extractive Entity Disambiguation, a novel approach to Entity Dis

☕ CoFiPruning: Structured Pruning Learns Compact and Accurate Models This repository contains the code and pruned models for our ACL'22 paper Structur

LinkBERT: A Knowledgeable Language Model Pretrained with Document Links This repo provides the model, code & data of our paper: LinkBERT: Pretraining

Nixtla Statistical ⚡️ Forecast Lightning fast forecasting with statistical and econometric models StatsForecast offers a collection of widely used uni

HugsVision is an open-source and easy to use all-in-one huggingface wrapper for computer vision. The goal is to create a fast, flexible and user-frien

BigDetection: A Large-scale Benchmark for Improved Object Detector Pre-training By Likun Cai, Zhi Zhang, Yi Zhu, Li Zhang, Mu Li, Xiangyang Xue. This

FantasyBert English | 中文 Introduction An easy-to-use framework for BERT models, with trainers, various NLP tasks and detailed annonations. You can imp

RITA: a Study on Scaling Up Generative Protein Sequence Models RITA is a family of autoregressive protein models, developed by a collaboration of Ligh

Self-Supervised Models are Continual Learners This is the official repository for the paper: Self-Supervised Models are Continual Learners Enrico Fini

SeqTR This is the official implementation of SeqTR: A Simple yet Universal Network for Visual Grounding, which simplifies and unifies the modelling fo

MTFAA-Net Unofficial PyTorch implementation of Baidu's MTFAA-Net: "Multi-Scale Temporal Frequency Convolutional Network With Axial Attention for Speec

CoCa - Pytorch Implementation of CoCa, Contrastive Captioners are Image-Text Foundation Models, in Pytorch. They were able to elegantly fit in contras

mmc installation git clone https://github.com/dmarx/Multi-Modal-Comparators cd 'Multi-Modal-Comparators' pip install poetry poetry build pip install d

Language Models Can See: Plugging Visual Controls in Text Generation Authors: Yixuan Su, Tian Lan, Yahui Liu, Fangyu Liu, Dani Yogatama, Yan Wang, Lin

sk2torch sk2torch converts scikit-learn models into PyTorch modules that can be tuned with backpropagation and even compiled as TorchScript. Problems

MedMCQA MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question Answering A large-scale, Multiple-Choice Question Answe

SentimentArcs - Emotion in Text An end-to-end pipeline based on Jupyter notebooks to detect, extract, process and anlayze emotion over time in text. E

Intrusion-Detection-System-Using-CNN-and-Transfer-Learning This is the code for the paper entitled "A Transfer Learning and Optimized CNN Based Intrus

CaiT-TF (Going deeper with Image Transformers) This repository provides TensorFlow / Keras implementations of different CaiT [1] variants from Touvron

GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation [OpenReview] [arXiv] [Code] The official implementation of GeoDiff: A Geome

Persian-Image-Captioning We fine-tuning the Vision Encoder Decoder Model for the task of image captioning on the coco-flickr-farsi dataset. The implem

Large-Scale Computing for the Social Sciences Spring 2022 - MACS 30123/MAPS 30123/PLSC 30123 Instructor Information TA Information TA Information Cour

PMR computer tutorials on HMMs (2021-2022) This is a repository for computer tutorials of Probabilistic Modelling and Reasoning (2021/2022) - a Univer

jie jie is a spatial genome aligner. This package parses true chromatin imaging signal from noise by aligning signals to a reference DNA polymer model

Large Models of Source Code I occasionally train and publicly release large neural language models on programs, including PolyCoder. Here, I describe

Workshop: Enterprise-Scale NLP with Hugging Face & Amazon SageMaker Earlier this year we announced a strategic collaboration with Amazon to make it ea

MVSS-Net Code and models for ICCV 2021 paper: Image Manipulation Detection by Multi-View Multi-Scale Supervision Update 22.02.17, Pretrained model for

Large-scale language modeling tutorials with PyTorch 안녕하세요. 저는 TUNiB에서 머신러닝 엔지니어로 근무 중인 고현웅입니다. 이 자료는 대규모 언어모델 개발에 필요한 여러가지 기술들을 소개드리기 위해 마련하였으며 기본적으로

Italian CLIP CLIP (Radford et al., 2021) is a multimodal model that can learn to represent images and text jointly in the same space. In this project,

Billion-Scale ANN http://big-ann-benchmarks.com/ Install The only prerequisite is Python (tested with 3.6) and Docker. Works with newer versions of Py

nvdiffrec Joint optimization of topology, materials and lighting from multi-view image observations as described in the paper Extracting Triangular 3D

ConvNeXt-TF This repository provides TensorFlow / Keras implementations of different ConvNeXt [1] variants. It also provides the TensorFlow / Keras mo

ProbAI 2021 - Probabilistic Programming and Variational Inference Tutorial with Pryo Day 1 (June 14) Slides Notebook: students_PPLs_Intro Notebook: so

FastTreeSHAP FastTreeSHAP package is built based on the paper Fast TreeSHAP: Accelerating SHAP Value Computation for Trees published in NeurIPS 2021 X

Contextual Attention Network: Transformer Meets U-Net Contexual attention network for medical image segmentation with state of the art results on skin

DeepXF: Explainable Forecasting and Nowcasting with State-of-the-art Deep Neural Networks and Dynamic Factor Model Also, verify TS signal similarities

In recent years, the dense retrievers based on pre-trained language models have achieved remarkable progress. To facilitate more developers using cutt

SciFive SciFive provided a Text-Text framework for biomedical language and natural language in NLP. Under the T5's framework and desrbibed in the pape

Bitcoin Realized Volatility Forecasting with GARCH and Multivariate LSTM Author: Chi Bui This Repository Repository Directory ├── README.md

TorchMultimodal (Alpha Release) Introduction TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

UTMOS: UTokyo-SaruLab MOS Prediction System Official implementation of "UTMOS: UTokyo-SaruLab System for VoiceMOS Challenge 2022" submitted to INTERSP

HSC4D: Human-centered 4D Scene Capture in Large-scale Indoor-outdoor Space Using Wearable IMUs and LiDAR. CVPR 2022 [Project page | Video] Getting sta

Retrieval-Augmented Denoising Diffusion Probabilistic Models (wip) Implementation of Retrieval-Augmented Denoising Diffusion Probabilistic Models in P

Imputing Out-of-Vocabulary Embeddings with LOVE Makes Language Models Robust with Little Cost LOVE is accpeted by ACL22 main conference as a long pape

LUPerson-NL Large-Scale Pre-training for Person Re-identification with Noisy Labels (LUPerson-NL) The repository is for our CVPR2022 paper Large-Scale

Pre-trained image classification models for Jax/Haiku Jax/Haiku Applications are deep learning models that are made available alongside pre-trained we

scc4onnx Very simple NCHW and NHWC conversion tool for ONNX. Change to the specified input order for each and every input OP. Also, change the channel

Introduction This codebase contains source-code of the Python-based implementation (ARES) of our SIGIR 2022 paper. Chen, Jia, et al. "Axiomatically Re

Seq2Seq Speech in JAX A JAX/Flax repository for combining a pre-trained speech encoder model (e.g. Wav2Vec2, HuBERT, WavLM) with a pre-trained text de

Classification models 1D Zoo - Keras and TF.Keras This repository contains 1D variants of popular CNN models for classification like ResNets, DenseNet

snc4onnx Simple tool to combine(merge) onnx models. Simple Network Combine Tool for ONNX. https://github.com/PINTO0309/simple-onnx-processing-tools 1.

DeepGNN Overview DeepGNN is a framework for training machine learning models on large scale graph data. DeepGNN contains all the necessary features in

Aiming at the common training datsets split, spectrum preprocessing, wavelength select and calibration models algorithm involved in the spectral analysis process, a complete algorithm library is established, which is named opensa (openspectrum analysis).

sam4onnx A very simple tool to rewrite parameters such as attributes and constants for OPs in ONNX models. Simple Attribute and Constant Modifier for

sog4onnx Simple ONNX operation generator. Simple Operation Generator for ONNX. https://github.com/PINTO0309/simple-onnx-processing-tools Key concept V

snd4onnx Simple node deletion tool for onnx. I only test very miscellaneous and limited patterns as a hobby. There are probably a large number of bugs

Smooth ReLU in PyTorch Unofficial PyTorch reimplementation of the Smooth ReLU (SmeLU) activation function proposed in the paper Real World Large Scale

A library to inspect itermediate layers of PyTorch models. Why? It's often the case that we want to inspect intermediate layers of a model without mod

Azimuth, an open-source dataset and error analysis tool for text classification, with love from ServiceNow. Overview Azimuth is an open source applica

LM-Debugger is an open-source interactive tool for inspection and intervention in transformer-based language models. This repository includes the code

sne4onnx A very simple tool for situations where optimization with onnx-simplifier would exceed the Protocol Buffers upper file size limit of 2GB, or

GP-VAE This repository provides datasets and code for preprocessing, training and testing models for the paper: Diverse Text Generation via Variationa

Click here to be re-directed to the Beat Inspect Streamlit Web-App You are a music producer? Let's get in touch via LinkedIn Fundamental Analytics for

hyperbox-brain is a Python open source toolbox implementing hyperbox-based machine learning algorithms built on top of scikit-learn and is distributed

scAR scAR (single cell Ambient Remover) is a package for denoising multiple single cell omics data. It can be used for multiple tasks, such as, sgRNA

Feature_CRF_AE Feature_CRF_AE provides a implementation of Bridging Pre-trained Language Models and Hand-crafted Features for Unsupervised POS Tagging

Overview of Credit Card Analysis In this project, RandomOverSampler and SMOTE algorithms were used to perform oversampling, ClusterCentroids algorithm

Transformers-for-NLP-2nd-Edition @copyright 2022, Packt Publishing, Denis Rothman Contact me for any question you have on LinkedIn Get the book on Ama

DNN Training, from theory to practice This repository is complementary to the deep learning training lesson given to les Mines ParisTech on the 11th o

Black-Box-Defense This repository contains the code and models necessary to replicate the results of our recent paper: How to Robustify Black-Box ML M

solarSystemOrbitalSimulation graphical orbitational simulation of solar system planets with real values and physics implemented so you get a nice elli

Black-Box-Defense This repository contains the code and models necessary to replicate the results of our recent paper: How to Robustify Black-Box ML M

DiffGAN-TTS - PyTorch Implementation PyTorch implementation of DiffGAN-TTS: High

Neural Machine Translation Framework: PyTorch Repository contaning my implementa

Covid-Tracker This is an interactive website that tracks, models and predicts CO

Federated_Learning 💻 This projest include common test models for federated lear

Using PyTorch Perform intent classification using three different models to see which one is better for this task

icepickle It's a cooler way to store simple linear models. The goal of icepickle is to allow a safe way to serialize and deserialize linear scikit-lea

Pseudo Numerical Methods for Diffusion Models on Manifolds (PNDM) This repo is the official PyTorch implementation for the paper Pseudo Numerical Meth

COLIEE 2021 - task 2: Legal Case Entailment This repository contains the code to reproduce NeuralMind's submissions to COLIEE 2021 presented in the pa

SALOD Source code of our work: "Benchmarking Deep Models for Salient Object Detection". In this works, we propose a new benchmark for SALient Object D

nerblackbox A python package to fine-tune transformer-based language models for named entity recognition (NER). Resources Source Code: https://github.

This is the replication package for paper submission: Towards Training Reproducible Deep Learning Models.

Circular genome tools (cgt) A sage package for working with circular genomes represented by signed or unsigned permutations. It includes tools for con

fast-Bart Reduction of BART model size by 3X, and boost in inference speed up to 3X BART implementation of the fastT5 library (https://github.com/Ki6a

KoRean based ELECTRA (KR-ELECTRA) This is a release of a Korean-specific ELECTRA model with comparable or better performances developed by the Computa

Large-Scale Unsupervised Object Discovery Huy V. Vo, Elena Sizikova, Cordelia Schmid, Patrick Pérez, Jean Ponce [PDF] We propose a novel ranking-based

We developed a method animating a statistical 3D human model for biomechanical analysis to increase accessibility for non-experts, like patients, athletes, or designers.

JFB: Jacobian-Free Backpropagation for Implicit Models

Datasets and pretrained Models for StyleGAN3 ... Dear arfiticial friend, this is a collection of artistic datasets and models that we have put togethe

SGPT: Multi-billion parameter models for semantic search This repository contains code, results and pre-trained models for the paper SGPT: Multi-billi

import-ply-as-verts Blender 3.1 Alpha (and later) PLY importer that correctly loads point clouds (and all PLY models as point clouds) Latest News Mand

Large-scale Knowledge Graph Construction with Prompting across tasks (predictive and generative), and modalities (language, image, vision + language, etc.)

Pretrained Japanese BERT models This is a repository of pretrained Japanese BERT models. The models are available in Transformers by Hugging Face. Mod

SuperGen The source code for Generating Training Data with Language Models: Towards Zero-Shot Language Understanding. Requirements Before running, you

Code for paper "Exploring extreme parameter compression for pre-trained language models ICLR2022"

pyrelational is a python active learning library developed by Relation Therapeutics for rapidly implementing active learning pipelines from data management, model development (and Bayesian approximation), to creating novel active learning strategies.