Python Graph-algorithms Resources

✔️ Linux ✔️ OS X ❌ Windows (#39) Welcome to graph-app-kit Turn your graph data into a secure and interactive visual graph app in 15 minutes! Why This

raylab Reinforcement learning algorithms in RLlib and PyTorch. Installation pip install raylab Quickstart Raylab provides agents and environments to b

mask-uncertainty-in-HSI This repository contains the testing code and pre-trained models for the paper Calibrated Hyperspectral Image Reconstruction v

Fast-Partial-Ranking-MNL This repo provides a PyTorch implementation for the CopulaGNN models as described in the following paper: Fast Learning of MN

cluster-link-prediction This repository provides some of the code implemented and the data used for the work proposed in "A Cluster-Based Trip Predict

Deep Transfer Learning on PyTorch This is a PyTorch library for deep transfer learning. We divide the code into two aspects: Single-source Unsupervise

Glyth Graph Revision for 0.01 A simple, yet versatile, package for graphing equations on a 2-dimensional text canvas List of contents: Brief Introduct

Scene-Change-Detection - A video scene detection algorithm is designed to detect a variety of different scenes within a video. There is a very simple definition for a scene: It is a series of logically and chronologically related shots taken in a specific order to depict an over-arching concept or story.

benchmark_spaces Benchmarks of how well different two dimensional spaces work fo

BasicNeuralNetwork - This project looks over the basic structure of a neural network and how machine learning training algorithms work. For this project, I used the sigmoid function as an activation function along with stochastic gradient descent to adjust the weights and biases.

Awesome Artificial Intelligence, Machine Learning and Deep Learning as we learn it. Study notes and a curated list of awesome resources of such topics.

Awesome AI books Some awesome AI related books and pdfs for downloading and learning. Preface This repo only used for learning, do not use in business

A collection of graph classification methods, covering embedding, deep learning, graph kernel and factorization papers

Most popular metrics used to evaluate object detection algorithms.

PySOT is a software system designed by SenseTime Video Intelligence Research team. It implements state-of-the-art single object tracking algorit

GANs in Action by Jakub Langr and Vladimir Bok List of available code: Chapter 2: Colab, Notebook Chapter 3: Notebook Chapter 4: Notebook Chapter 6: C

Hyperparameter Optimization of Machine Learning Algorithms This code provides a hyper-parameter optimization implementation for machine learning algor

As much as this series is to educate aspiring computer programmers and data scientists of all ages and all backgrounds, it is also a reminder to mysel

Overview This repository implements some common path planning algorithms used in robotics, including Search-based algorithms and Sampling-based algori

Distributed Systems Algorithms ISIS algorithm In an asynchronous system that kee

Optimizers Visualized Visualization of how different optimizers handle mathematical functions for optimization. Contents Installation Usage Functions

Total number of Spanning Trees in a Graph This is a python script just written f

Strongly local p-norm-cut algorithms for semi-supervised learning and local graph clustering

Confidence-based Graph Convolutional Networks for Semi-Supervised Learning Source code for AISTATS 2019 paper: Confidence-based Graph Convolutional Ne

Neural Structured Learning in TensorFlow Neural Structured Learning (NSL) is a new learning paradigm to train neural networks by leveraging structured

Graph-based joint model with Nonignorable Missingness (GNM) This is a Keras implementation of the GNM model in paper ’Graph-Based Semi-Supervised Lear

G3NN This repo provides a pytorch implementation for the 4 instantiations of the flexible generative framework as described in the following paper: A

Graph Contrastive Learning with Augmentations PyTorch implementation for Graph Contrastive Learning with Augmentations [poster] [appendix] Yuning You*

CCGL: Contrastive Cascade Graph Learning This repo provides a reference implementation of Contrastive Cascade Graph Learning (CCGL) framework as descr

GitHub Activity Generator A script that helps you instantly generate a beautiful GitHub Contributions Graph for the last year. Before 😐 😶 😒 After ?

Python implementation of Aho-Corasick algorithm for string searching

GCC: Graph Contrastive Coding for Graph Neural Network Pre-Training Original implementation for paper GCC: Graph Contrastive Coding for Graph Neural N

GRACE The official PyTorch implementation of deep GRAph Contrastive rEpresentation learning (GRACE). For a thorough resource collection of self-superv

GMI (Graphical Mutual Information) Graph Representation Learning via Graphical Mutual Information Maximization (Peng Z, Huang W, Luo M, et al., WWW 20

SelfGNN A PyTorch implementation of "SelfGNN: Self-supervised Graph Neural Networks without explicit negative sampling" paper, which will appear in Th

Pretraining on Dynamic Graph Neural Networks Our article is PT-DGNN and the code is modified based on GPT-GNN Requirements python 3.6 Ubuntu 18.04.5 L

DGI Deep Graph Infomax (Veličković et al., ICLR 2019): https://arxiv.org/abs/1809.10341 Overview Here we provide an implementation of Deep Graph Infom

Unsupervised Attributed Multiplex Network Embedding (DMGI) Overview Nodes in a multiplex network are connected by multiple types of relations. However

Heterogeneous-Deep-Graph-Infomax Parameter Setting: HDGI-A: Node-level dimension: 16 Attention head: 4 Semantic-level attention vector: 8 learning rat

Subg-Con Sub-graph Contrast for Scalable Self-Supervised Graph Representation Learning (Jiao et al., ICDM 2020): https://arxiv.org/abs/2009.10273 Over

Graph-InfoClust-GIC [PAKDD 2021] PAKDD'21 version Graph InfoClust: Maximizing Coarse-Grain Mutual Information in Graphs Preprint version Graph InfoClu

Awesome Model-Based Reinforcement Learning This is a collection of research papers for model-based reinforcement learning (mbrl). And the repository w

MC Outpost A Python server and client application that tracks player session times and server status About MC Outpost provides a session graph and ser

PyMeasure scientific package PyMeasure makes scientific measurements easy to set up and run. The package contains a repository of instrument classes a

Block Modeling-Guided Graph Convolutional Neural Networks This repository contains the demo code of the paper: Block Modeling-Guided Graph Convolution

InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization Authors: Fan-yun Sun, Jordan Hoffm

NeoDTI NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions (Bioinformatics).

SelfTask-GNN A PyTorch implementation of "Self-supervised Learning on Graphs: Deep Insights and New Directions". [paper] In this paper, we first deepe

Graph-Bert Source code of "Graph-Bert: Only Attention is Needed for Learning Graph Representations". Please check the script.py as the entry point. We

Pretrain-Recsys This is our Tensorflow implementation for our WSDM 2021 paper: Bowen Hao, Jing Zhang, Hongzhi Yin, Cuiping Li, Hong Chen. Pre-Training

SLAPS-GNN This repo contains the implementation of the model proposed in SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networks

G-Bert Pre-training of Graph Augmented Transformers for Medication Recommendation Intro G-Bert combined the power of Graph Neural Networks and BERT (B

GPT-GNN: Generative Pre-Training of Graph Neural Networks GPT-GNN is a pre-training framework to initialize GNNs by generative pre-training. It can be

Self-supervised Auxiliary Learning with Meta-paths for Heterogeneous Graphs This repository is the implementation of SELAR. Dasol Hwang* , Jinyoung Pa

deeper_insights_into_GCNs Deeper insights into graph convolutional networks for semi-supervised learning References data and utils.py come from Implem

Reference Code for AAAI-20 paper "Multi-Stage Self-Supervised Learning for Graph Convolutional Networks on Graphs with Few Labels" Please refer to htt

Self-supervised edge features for improved Graph Neural Network training Data availability: Here is a link to the raw data for the organoids dataset.

DrRepair: Learning to Repair Programs from Error Messages This repo provides the source code & data of our paper: Graph-based, Self-Supervised Program

Implementation for the papers: Self-Supervised Hyperboloid Representations from Logical Queries over Knowledge Graphs, Nurendra Choudhary, Nikhil Rao,

SAG-DTA The code is the implementation for the paper 'SAG-DTA: Prediction of Drug–Target Affinity Using Self-Attention Graph Network'. Requirements py

Cross Domain Facial Expression Recognition Benchmark Implementation of papers: Cross-Domain Facial Expression Recognition: A Unified Evaluation Benchm

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This project was developed using python 3 and Flask, it is an MVC system where the AES 128 CBC and Trivium algorithms can be tested through a communication between the computer and a device such as a microcontroller that provides these algorithms.

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

UMLS-Graph Build a medical knowledge graph based on Unified Language Medical System (UMLS) Requisite Install MySQL Server 5.6 and import UMLS data int

MS Graph API authentication example with Fast API What it is & does This is a simple python service/webapp, using FastAPI with server side rendering,

LynxKite is a complete graph data science platform for very large graphs and other datasets. It seamlessly combines the benefits of a friendly graphical interface and a powerful Python API.

Implemented four supervised learning Machine Learning algorithms from an algorithmic family called Classification and Regression Trees (CARTs), details see README_Report.

Continuous Wasserstein-2 Benchmark This is the official Python implementation of the NeurIPS 2021 paper Do Neural Optimal Transport Solvers Work? A Co

pysal/spaghetti SPAtial GrapHs: nETworks, Topology, & Inference Spaghetti is an open-source Python library for the analysis of network-based spatial d

tfgraphviz tfgraphviz is a module to visualize a TensorFlow's data flow graph like TensorBoard using Graphviz. tfgraphviz enables to provide a visuali

Logo by Zhuoning Yuan LibAUC: A Machine Learning Library for AUC Optimization Website | Updates | Installation | Tutorial | Research | Github LibAUC a

Build an Amazon SageMaker Pipeline to Transform Raw Texts to A Knowledge Graph This repository provides a pipeline to create a knowledge graph from ra

PyNode Next A complete rewrite of PyNode for the modern era. Up to five times faster than the original PyNode. PyNode Next allows you to easily create

This repository contains sample code scripts for creating awesome data visualizations from scratch using different python libraries (such as matplotli

SciPy SciPy (pronounced "Sigh Pie") is an open-source software for mathematics, science, and engineering. It includes modules for statistics, optimiza

Transcript Analysis - Graph + NLP This program extracts insights from Zoom Meeting Transcripts (.vtt) using TigerGraph and NLTK. In order to run this

DAG_Generator Random Directed Acyclic Graph Generator verison1.0 简介 工作流通常由DAG（有向无环图）来定义，其中每个计算任务$T_i$由一个顶点(node,task,vertex)表示。同时，任务之间的每个数据或控制依赖性由一条加权

NetKet NetKet is an open-source project delivering cutting-edge methods for the study of many-body quantum systems with artificial neural networks and

Multimodal Trajectory Prediction Conditioned on Lane-Graph Traversals This repository contains code for "Multimodal trajectory prediction conditioned

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

Neointerface - Neo4j made easy for Python programmers! A Python interface to use the Neo4j graph database, and simplify its use. class NeoInterface: C

HyFactor Graph-based architectures are becoming increasingly popular as a tool for structure generation. Here, we introduce a novel open-source archit

ForceAtlas2 for Python A port of Gephi's Force Atlas 2 layout algorithm to Python 2 and Python 3 (with a wrapper for NetworkX and igraph). This is the

gdsclient NOTE: This is a work in progress and many GDS features are known to be missing or not working properly. This repo hosts the sources for gdsc

gdsclient This repo hosts the sources for gdsclient, a Python wrapper API for operating and working with the Neo4j Graph Data Science (GDS) library. g

No-Reference Image Quality Assessment Algorithms No-reference Image Quality Assessment(NIQA) is a task of evaluating an image without a reference imag

deepGCFX PyTorch implementation for our AAAI 2022 Paper "Graph-wise Common Latent Factor Extraction for Unsupervised Graph Representation Learning" Pr

Graph Convolutional Networks with Dual Message Passing for Subgraph Isomorphism Counting and Matching This repository is an official implementation of

A Comparative Review of Recent Kinect-Based Action Recognition Algorithms This repo contains: the HDG implementation (Matlab codes) for 'Analysis and

ReFine: Multi-Grained Explainability for GNNs This is the official code for Towards Multi-Grained Explainability for Graph Neural Networks (NeurIPS 20

Repository for Comparison based sorting algorithms in python. This was implemented for project one submission for ITCS 6114 Data Structures and Algorithms under the guidance of Dr. Dewan at the University of North Carolina at Charlotte, Fall 2021.

SSL_OSC Graph Self-Supervised Learning for Optoelectronic Properties of Organic Semiconductors

LTGen LTGen stands for Language Theory GENerator and provides tools to implement language theory. Command Line LTGen is a collection of tools to imple

pybnb A parallel branch-and-bound engine for Python. This software is copyright (c) by Gabriel A. Hackebeil (gabe.hacke

Documentation | External Resources | Datasets | Examples ChemicalX is a deep learning library for drug-drug interaction, polypharmacy side effect and

Sklearn-genetic-opt scikit-learn models hyperparameters tuning and feature selection, using evolutionary algorithms. This is meant to be an alternativ

KiwiDB HTTP graph database built in Python 3. Reference Format References are strings in the format: {refIDENTIFIER@GROUP} Authentication Currently, t

Target Adaptive Context Aggregation for Video Scene Graph Generation This is a PyTorch implementation for Target Adaptive Context Aggregation for Vide

ICCV'21 Context-aware Scene Graph Generation with Seq2Seq Transformers Authors: Yichao Lu*, Himanshu Rai*, Cheng Chang*, Boris Knyazev†, Guangwei Yu,