Python Graph-alignment Resources

Permute Me Softly: Learning Soft Permutations for Graph Representations

Relation Prediction as an Auxiliary Training Objective for Knowledge Base Completion This repo provides the code for the paper Relation Prediction as

A graph neural network (GNN) model to predict protein-protein interactions (PPI) with no sample features

A geometric deep learning pipeline for predicting protein interface contacts.

A framework for evaluating Knowledge Graph Embedding Models in a fine-grained manner.

GNNLens2 is an interactive visualization tool for graph neural networks (GNN).

DGCNN is the author's re-implementation of Dynamic Graph CNN, which achieves state-of-the-art performance on point-cloud-related high-level tasks including category classification, semantic segmentation and part segmentation.

face.evoLVe: High-Performance Face Recognition Library based on PaddlePaddle & PyTorch Evolve to be more comprehensive, effective and efficient for fa

IGMTF The source code and data of the paper "Instance-wise Graph-based Framework for Multivariate Time Series Forecasting". Requirements The framework

Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo

GLaRA: Graph-based Labeling Rule Augmentation for Weakly Supervised Named Entity Recognition

RE2 This is a pytorch implementation of the ACL 2019 paper "Simple and Effective Text Matching with Richer Alignment Features". The original Tensorflo

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes

Graphlevel-SSL Overview Apply Graph Self-Supervised Learning methods to graph-level task(TUDataset, MolculeNet Dataset). It is unified framework to co

Dynamic Attentive Graph Learning for Image Restoration This repository is for GATIR introduced in the following paper: Chong Mou, Jian Zhang, Zhuoyuan

SE Aggregation This is the implementation for Rethinking High-order Graph Convolutional Networks. Here we show the codes for citation networks as an e

AAGCN-ACSA EMNLP 2021 Introduction This repository was used in our paper: Beta Distribution Guided Aspect-aware Graph for Aspect Category Sentiment An

Pyan takes one or more Python source files, performs a (rather superficial) static analysis, and constructs a directed graph of the objects in the combined source, and how they define or use each other. The graph can be output for rendering by GraphViz or yEd.

FaPN: Feature-aligned Pyramid Network for Dense Image Prediction [arXiv] [Project Page] @inproceedings{ huang2021fapn, title={{FaPN}: Feature-alig

DeepPanoContext (DPC) [Project Page (with interactive results)][Paper] DeepPanoContext: Panoramic 3D Scene Understanding with Holistic Scene Context G

This is an open-source toolkit for Heterogeneous Graph Neural Network(OpenHGNN) based on DGL [Deep Graph Library] and PyTorch.

CTR-GCN This repo is the official implementation for Channel-wise Topology Refinement Graph Convolution for Skeleton-Based Action Recognition. The pap

MVGCN MVGCN: a novel multi-view graph convolutional network (MVGCN) framework for link prediction in biomedical bipartite networks. Developer: Fu Hait

Adaptive Graph Convolution for Point Cloud Analysis This repository contains the implementation of AdaptConv for point cloud analysis. Adaptive Graph

Graph2Pix: A Graph-Based Image to Image Translation Framework Installation Install the dependencies in env.yml $ conda env create -f env.yml $ conda a

Single Node Injection Attack against Graph Neural Networks This repository is our Pytorch implementation of our paper: Single Node Injection Attack ag

ANEMONE A PyTorch implementation of "ANEMONE: Graph Anomaly Detection with Multi-Scale Contrastive Learning", CIKM-21 Dependencies python==3.6.1 dgl==

BasicVSR++: Improving Video Super-Resolution with Enhanced Propagation and Alignment

近年来，图计算在搜索、推荐和风控等场景中获得显著的效果，但也面临超大规模异构图训练，与现有的深度学习框架Tensorflow和PyTorch结合等难题。 Galileo（伽利略）是一个图深度学习框架，具备超大规模、易使用、易扩展、高性能、双后端等优点，旨在解决超大规模图算法在工业级场景的落地难题，提

✨A Python framework to explore, label, and monitor data for NLP projects

deep-linear-shapes PyTorch implementation of "Representing Shape Collections with Alignment-Aware Linear Models" paper. If you find this code useful i

ZSL-KG is a general-purpose zero-shot learning framework with a novel transformer graph convolutional network (TrGCN) to learn class representa

GraphKer Open Source Tool - Cybersecurity Graph Database in Neo4j |G|r|a|p|h|K|e|r| { open source tool for a cybersecurity graph database in neo4j } W

COTREC Codes for CIKM'21 paper 'Self-Supervised Graph Co-Training for Session-based Recommendation'. Requirements: Python 3.7, Pytorch 1.6.0 Best Hype

MWPToolkit is a PyTorch-based toolkit for Math Word Problem (MWP) solving. It is a comprehensive framework for research purpose that integrates popular MWP benchmark datasets and typical deep learning-based MWP algorithms.

Poplar Implementation of Bundle Adjustment using Gaussian Belief Propagation on Graphcore's IPU Implementation of CVPR 2020 paper: Bundle Adjustment o

SGLKT-VisDial Pytorch Implementation for the paper: Reasoning Visual Dialog with Sparse Graph Learning and Knowledge Transfer Gi-Cheon Kang, Junseok P

GraphGT: Machine Learning Datasets for Graph Generation and Transformation Dataset Website | Paper Installation Using pip To install the core environm

Differentiable Factor Graph Optimization for Learning Smoothers Overview Status Setup Datasets Training Evaluation Acknowledgements Overview Code rele

Using a predicted aligned error matrix corresponding to an AlphaFold2 model , returns a series of lists of residue indices, where each list corresponds to a set of residues clustering together into a pseudo-rigid domain.

Bag of Tricks for Training Deeper Graph Neural Networks: A Comprehensive Benchmark Study Codes for [Preprint] Bag of Tricks for Training Deeper Graph

SADRNet Paper link: SADRNet: Self-Aligned Dual Face Regression Networks for Robust 3D Dense Face Alignment and Reconstruction Requirements python

Filtration Curves for Graph Representation This repository provides the code from the KDD'21 paper Filtration Curves for Graph Representation. Depende

MERIT A PyTorch implementation of our IJCAI-21 paper Multi-Scale Contrastive Siamese Networks for Self-Supervised Graph Representation Learning. Depen

Graph-Based Local Trajectory Planner The graph-based local trajectory planner is python-based and comes with open interfaces as well as debug, visuali

One-stage object detection is commonly implemented by optimizing two sub-tasks: object classification and localization, using heads with two parallel branches, which might lead to a certain level of spatial misalignment in predictions between the two tasks.

SpiderFoot Neo4j Tools Import, visualize, and analyze SpiderFoot OSINT data in Neo4j, a graph database Step 1: Installation NOTE: This installs the sf

SIGIR2021-EGLN The implement of paper "Enhanced Graph Learning for Collaborative Filtering via Mutual Information Maximization" Neural graph based Col

Torch-RGCN Torch-RGCN is a PyTorch implementation of the RGCN, originally proposed by Schlichtkrull et al. in Modeling Relational Data with Graph Conv

README.md shall be finished soon. WSSGG 0 Overview 1 Installation 1.1 Faster-RCNN 1.2 Language Parser 1.3 GloVe Embeddings 2 Settings 2.1 VG-GT-Graph

Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting Official PyTorch implementation of the paper: Improving Graph Neural Net

The tl;dr on a few notable transformer/language model papers + other papers (alignment, memorization, etc).

Seeing Dynamic Scene in the Dark: High-Quality Video Dataset with Mechatronic Alignment This is a pytorch project for the paper Seeing Dynamic Scene i

Graph ConvNets in PyTorch October 15, 2017 Xavier Bresson http://www.ntu.edu.sg/home/xbresson https://github.com/xbresson https://twitter.com/xbresson

Graph Convolutional Networks in PyTorch PyTorch implementation of Graph Convolutional Networks (GCNs) for semi-supervised classification [1]. For a hi

PanGraphViewer -- show panenome graph in an easy way Table of Contents Versions and dependences Desktop-based panGraphViewer Library installation for

Graph Convolutional Networks for Hyperspectral Image Classification Danfeng Hong, Lianru Gao, Jing Yao, Bing Zhang, Antonio Plaza, Jocelyn Chanussot T

Heterogeneous Graph Benchmark Revisiting, benchmarking, and refining Heterogeneous Graph Neural Networks. Roadmap We organize our repo by task, and on

Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl

A powerful and flexible machine learning platform for drug discovery

Genalog is an open source, cross-platform python package allowing generation of synthetic document images with custom degradations and text alignment capabilities.

CG-MuAlign A reference implementation for "Collective Multi-type Entity Alignment Between Knowledge Graphs", published in WWW 2020. If you find our pa

GNNGuard: Defending Graph Neural Networks against Adversarial Attacks Authors: Xiang Zhang ([email protected]), Marinka Zitnik (marinka@hms.

PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL components from published papers, standardized evaluation, and experiment management.

中文开放信息抽取系统, open-information-extraction-system, build open-knowledge-graph(SPO, subject-predicate-object) by pyltp(version==3.4.0)

PyGCL: Graph Contrastive Learning for PyTorch PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL com

Sequence Feature Alignment (SFA) By Wen Wang, Yang Cao, Jing Zhang, Fengxiang He, Zheng-jun Zha, Yonggang Wen, and Dacheng Tao This repository is an o

Deep CORAL A PyTorch implementation of 'Deep CORAL: Correlation Alignment for Deep Domain Adaptation. B Sun, K Saenko, ECCV 2016' Deep CORAL can learn

HKD Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks" cifia-100 result The implementation of compared methods are ba

A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G

ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes

GNN4Traffic - This is the repository for the collection of Graph Neural Network for Traffic Forecasting

TilinGNN: Learning to Tile with Self-Supervised Graph Neural Network (SIGGRAPH 2020) About The goal of our research problem is illustrated below: give

Open-source tool for exploring, labeling, and monitoring data for AI projects

Face Alignment in Full Pose Range: A 3D Total Solution By Jianzhu Guo. [Updates] 2020.8.30: The pre-trained model and code of ECCV-20 are made public

Graph Wavelet Neural Network ⠀⠀ A PyTorch implementation of Graph Wavelet Neural Network (ICLR 2019). Abstract We present graph wavelet neural network

Attention Walk ⠀⠀ A PyTorch Implementation of Watch Your Step: Learning Node Embeddings via Graph Attention (NIPS 2018). Abstract Graph embedding meth

SGCN ⠀ A PyTorch implementation of Signed Graph Convolutional Network (ICDM 2018). Abstract Due to the fact much of today's data can be represented as

Scalable Incomplete Network Embedding ⠀⠀ A PyTorch implementation of Scalable Incomplete Network Embedding (ICDM 2018). Abstract Attributed network em

GAM ⠀⠀ A PyTorch implementation of Graph Classification Using Structural Attention (KDD 2018). Abstract Graph classification is a problem with practic

TuckER: Tensor Factorization for Knowledge Graph Completion This codebase contains PyTorch implementation of the paper: TuckER: Tensor Factorization f

SimGNN ⠀⠀⠀ A PyTorch implementation of SimGNN: A Neural Network Approach to Fast Graph Similarity Computation (WSDM 2019). Abstract Graph similarity s

APPNP ⠀ A PyTorch implementation of Predict then Propagate: Graph Neural Networks meet Personalized PageRank (ICLR 2019). Abstract Neural message pass

MixHop and N-GCN ⠀ A PyTorch implementation of "MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixing" (ICML 2019)

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

CapsGNN ⠀⠀ A PyTorch implementation of Capsule Graph Neural Network (ICLR 2019). Abstract The high-quality node embeddings learned from the Graph Neur

SEAL ⠀⠀⠀ A PyTorch implementation of Semi-Supervised Graph Classification: A Hierarchical Graph Perspective (WWW 2019) Abstract Node classification an

ClusterGCN ⠀⠀ A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019). A

On the Bottleneck of Graph Neural Networks and its Practical Implications This is the official implementation of the paper: On the Bottleneck of Graph

Library | Paper | Slack We released two versions of OAG-BERT in CogDL package. OAG-BERT is a heterogeneous entity-augmented academic language model wh

ElasticGNN This repository includes the official implementation of ElasticGNN in the paper "Elastic Graph Neural Networks" [ICML 2021]. Xiaorui Liu, W

PGExplainer This is a Tensorflow implementation of the paper: Parameterized Explainer for Graph Neural Network https://arxiv.org/abs/2011.04573 NeurIP

A collection of research papers and software related to explainability in graph machine learning.

RE2 This is a pytorch implementation of the ACL 2019 paper "Simple and Effective Text Matching with Richer Alignment Features". The original Tensorflo

PyKEEN PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-m

Binance Report Bot The intent of this bot is to take a snapshot of your binance wallet, e.g. the current balances and store it for further plotting. I

RetinaFace is a deep learning based cutting-edge facial detector for Python coming with facial landmarks.

CLIPPER: A Graph-Theoretic Framework for Robust Data Association Data association is a fundamental problem in robotics and autonomy. CLIPPER provides

Self-supervised Graph-level Representation Learning with Local and Global Structure Introduction This project is an implementation of ``Self-supervise