Python Graph-analysis Resources

CG-MuAlign A reference implementation for "Collective Multi-type Entity Alignment Between Knowledge Graphs", published in WWW 2020. If you find our pa

GNNGuard: Defending Graph Neural Networks against Adversarial Attacks Authors: Xiang Zhang ([email protected]), Marinka Zitnik (marinka@hms.

Yuyu Scanner Yuyu Scanner is a Web Reconnaissance & Web Analysis Scanner to find assets and information about targets. installation ! run as root

PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL components from published papers, standardized evaluation, and experiment management.

中文开放信息抽取系统, open-information-extraction-system, build open-knowledge-graph(SPO, subject-predicate-object) by pyltp(version==3.4.0)

Leetcode compensations report Scraping and analysis of leetcode-compensations page.

PyGCL: Graph Contrastive Learning for PyTorch PyGCL is an open-source library for graph contrastive learning (GCL), which features modularized GCL com

HKD Code for ICCV 2021 paper "Distilling Holistic Knowledge with Graph Neural Networks" cifia-100 result The implementation of compared methods are ba

A PyTorch Implementation of GGNN This is a PyTorch implementation of the Gated Graph Sequence Neural Networks (GGNN) as described in the paper Gated G

Continuous Wavelet Transforms in PyTorch This is a PyTorch implementation for the wavelet analysis outlined in Torrence and Compo (BAMS, 1998). The co

LogDeep is an open source deeplearning-based log analysis toolkit for automated anomaly detection.

ConvE Convolutional 2D Knowledge Graph Embeddings resources. Paper: Convolutional 2D Knowledge Graph Embeddings Used in the paper, but do not use thes

GNN4Traffic - This is the repository for the collection of Graph Neural Network for Traffic Forecasting

Performance Ninja Class This is an online course where you can learn to find and fix low-level performance issues, for example CPU cache misses and br

With CueObserve, you can run anomaly detection on data in your SQL data warehouses and databases. Getting Started Install via Docker docker run -p 300

TilinGNN: Learning to Tile with Self-Supervised Graph Neural Network (SIGGRAPH 2020) About The goal of our research problem is illustrated below: give

TLA - Twitter Linguistic Analysis Tool for linguistic analysis of communities TLA is built using PyTorch, Transformers and several other State-of-the-

This repo contains sample code and example datasets from Jon Stewart and Noah Rubin's presentation at the 2021 SANS DFIR Summit titled Greppin' Logs. The talk was centered around the idea that Forensics is Data Engineering and Data Science, and should be approached as such. Jon and Noah focused on the core (Unix) command line tools useful to anyone analyzing datasets from a terminal, purpose-built tools for handling structured tabular and JSON data, Stroz Friedberg's open source multipattern search tool Lightgrep, and scaling with AWS.

Open-source tool for exploring, labeling, and monitoring data for AI projects

Graph Wavelet Neural Network ⠀⠀ A PyTorch implementation of Graph Wavelet Neural Network (ICLR 2019). Abstract We present graph wavelet neural network

Attention Walk ⠀⠀ A PyTorch Implementation of Watch Your Step: Learning Node Embeddings via Graph Attention (NIPS 2018). Abstract Graph embedding meth

SGCN ⠀ A PyTorch implementation of Signed Graph Convolutional Network (ICDM 2018). Abstract Due to the fact much of today's data can be represented as

Scalable Incomplete Network Embedding ⠀⠀ A PyTorch implementation of Scalable Incomplete Network Embedding (ICDM 2018). Abstract Attributed network em

GAM ⠀⠀ A PyTorch implementation of Graph Classification Using Structural Attention (KDD 2018). Abstract Graph classification is a problem with practic

TuckER: Tensor Factorization for Knowledge Graph Completion This codebase contains PyTorch implementation of the paper: TuckER: Tensor Factorization f

SimGNN ⠀⠀⠀ A PyTorch implementation of SimGNN: A Neural Network Approach to Fast Graph Similarity Computation (WSDM 2019). Abstract Graph similarity s

APPNP ⠀ A PyTorch implementation of Predict then Propagate: Graph Neural Networks meet Personalized PageRank (ICLR 2019). Abstract Neural message pass

MixHop and N-GCN ⠀ A PyTorch implementation of "MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixing" (ICML 2019)

Splitter ⠀⠀ A PyTorch implementation of Splitter: Learning Node Representations that Capture Multiple Social Contexts (WWW 2019). Abstract Recent inte

CapsGNN ⠀⠀ A PyTorch implementation of Capsule Graph Neural Network (ICLR 2019). Abstract The high-quality node embeddings learned from the Graph Neur

Newsemble is an API that provides easy access to the current news for programmatic analysis. It has been built using Python, BeautifulSoup and MongoDB.

SEAL ⠀⠀⠀ A PyTorch implementation of Semi-Supervised Graph Classification: A Hierarchical Graph Perspective (WWW 2019) Abstract Node classification an

ClusterGCN ⠀⠀ A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019). A

About DRIFT is a tool for Diachronic Analysis of Scientific Literature. The application offers user-friendly and customizable utilities for two modes:

On the Bottleneck of Graph Neural Networks and its Practical Implications This is the official implementation of the paper: On the Bottleneck of Graph

Library | Paper | Slack We released two versions of OAG-BERT in CogDL package. OAG-BERT is a heterogeneous entity-augmented academic language model wh

ElasticGNN This repository includes the official implementation of ElasticGNN in the paper "Elastic Graph Neural Networks" [ICML 2021]. Xiaorui Liu, W

PGExplainer This is a Tensorflow implementation of the paper: Parameterized Explainer for Graph Neural Network https://arxiv.org/abs/2011.04573 NeurIP

Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools that leverages the spatial coordinates of the data, as well as tissue images if available.

A collection of research papers and software related to explainability in graph machine learning.

Aspect-level Sentiment Classification Code and dataset for ACL2018 [paper] ‘‘Exploiting Document Knowledge for Aspect-level Sentiment Classification’’

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast

PyKEEN PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-m

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

All-in-one web-based development environment for machine learning Getting Started • Features & Screenshots • Support • Report a Bug • FAQ • Known Issu

Binance Report Bot The intent of this bot is to take a snapshot of your binance wallet, e.g. the current balances and store it for further plotting. I

A linter to manage all your python exceptions and try/except blocks (limited only for those who like dinosaurs).

A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.

CLIPPER: A Graph-Theoretic Framework for Robust Data Association Data association is a fundamental problem in robotics and autonomy. CLIPPER provides

Self-supervised Graph-level Representation Learning with Local and Global Structure Introduction This project is an implementation of ``Self-supervise

Heterogeneous INteract and aggreGatE (GraphHINGE) This is a pytorch implementation of GraphHINGE model. This is the experiment code in the following w

Manage your exceptions in Python like a PRO Currently in BETA. Inspired by this blog post. I shared the building process of this tool here. “For those

Box is a text-based visual programming language inspired by Unreal Engine blueprint function graphs. $ cat factorial.box ┌─ƒ(Factorial)───┐

Posture: Pose Tracking and Machine Learning for prescribing corrective suggestions to improve posture and form while exercising. This repository conta

GCResNet PyTorch implementation of Graph Convolutional Networks in Feature Space for Image Deblurring and Super-resolution, IJCNN 2021. The code will

This is my reading list for my PhD in AI, NLP, Deep Learning and more.

Visual Python is a GUI-based Python code generator, developed on the Jupyter Notebook environment as an extension.

GPRGNN This is the source code for our ICLR2021 paper: Adaptive Universal Generalized PageRank Graph Neural Network. Hidden state feature extraction i

Physics-aware Difference Graph Networks for Sparsely-Observed Dynamics This repository is the official PyTorch implementation of "Physics-aware Differ

Learning Canonical Representations for Scene Graph to Image Generation (ECCV 2020) Roei Herzig*, Amir Bar*, Huijuan Xu, Gal Chechik, Trevor Darrell, A

Graph-to-Graph Transformers Self-attention models, such as Transformer, have been hugely successful in a wide range of natural language processing (NL

StyleSpace Analysis: Disentangled Controls for StyleGAN Image Generation Implementation of StyleSpace Analysis: Disentangled Controls for StyleGAN Ima

Graph4NLP Graph4NLP is an easy-to-use library for R&D at the intersection of Deep Learning on Graphs and Natural Language Processing (i.e., DLG4NLP).

Graph Transformer - Pytorch Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2. This was recently used by bot

A ready-to-use framework of latest models for structured (tabular) data learning with PyTorch. Applications include recommendation, CRT prediction, healthcare analytics, and etc.

DeepCDR Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network This work has been accepted to ECCB2020 and was also published in the

Stox ⚡ A Python Module For The Stock Market ⚡ A Module to predict the "close price" for the next day and give "technical analysis". It uses a Neural N

Gamestonk Terminal is an awesome stock and crypto market terminal. A FOSS alternative to Bloomberg Terminal.

Objective of the repository is to learn and build machine learning models using Pytorch. 30DaysofML Using Pytorch

FinGAT: A Financial Graph Attention Networkto Recommend Top-K Profitable Stocks This is our implementation for the paper: FinGAT: A Financial Graph At

Random Walk Graph Neural Networks This repository is the official implementation of Random Walk Graph Neural Networks. Requirements Code is written in

wechat-wow-analysis Understanding WeChat User Preferences and “Wow” Diffusion. Fanjin Zhang, Jie Tang, Xueyi Liu, Zhenyu Hou, Yuxiao Dong, Jing Zhang,

JittorVis - Visual understanding of deep learning model.

AWS_ORG_MAPPER This tool uses sso-oidc to authenticate to the AWS organization. Once authenticated the tool will attempt to enumerate all users and ro

frida-ceserver frida-based ceserver. iOS analysis is possible with Cheat Engine. Original by Dark Byte. Usage Install frida on iOS. python main.py Cyd

TunBERT is the first release of a pre-trained BERT model for the Tunisian dialect using a Tunisian Common-Crawl-based dataset. TunBERT was applied to three NLP downstream tasks: Sentiment Analysis (SA), Tunisian Dialect Identification (TDI) and Reading Comprehension Question-Answering (RCQA)

We present Graph Neural Diffusion (GRAND) that approaches deep learning on graphs as a continuous diffusion process and treats Graph Neural Networks (GNNs) as discretisations of an underlying PDE.

The final code for OGB Installation Requirements: ogb=1.3.1 torch=1.7.0 torch-geometric=1.7.0 torch-scatter=2.0.6 torch-sparse=0.6.9 Baseline models T

🧪📈 🐍. The purpose of the panel-chemistry project is to make it really easy for you to do DATA ANALYSIS and build powerful DATA AND VIZ APPLICATIONS within the domain of Chemistry using using Python and HoloViz Panel.

spafe aims to simplify features extractions from mono audio files. The library can extract of the following features: BFCC, LFCC, LPC, LPCC, MFCC, IMFCC, MSRCC, NGCC, PNCC, PSRCC, PLP, RPLP, Frequency-stats etc. It also provides various filterbank modules (Mel, Bark and Gammatone filterbanks) and other spectral statistics.

🐸 Identify anything. pyWhat easily lets you identify emails, IP addresses, and more. Feed it a .pcap file or some text and it'll tell you what it is! 🧙‍♀️

Kats, a kit to analyze time series data, a lightweight, easy-to-use, generalizable, and extendable framework to perform time series analysis, from understanding the key statistics and characteristics, detecting change points and anomalies, to forecasting future trends.

Segmentation and Identification of Vertebrae in CT Scans using CNN, k-means Clustering and k-NN If you use this code for your research, please cite ou

The MDAkit for membrane curvature analysis is part of the Google Summer of Code program and it is linked to a Code of Conduct.

LMs for biomedical KG completion This repository contains code to run the experiments described in: Scientific Language Models for Biomedical Knowledg

NBEATSx: Neural basis expansion analysis with exogenous variables We extend the NBEATS model to incorporate exogenous factors. The resulting method, c

Graph Contrastive Learning Automated PyTorch implementation for Graph Contrastive Learning Automated [talk] [poster] [appendix] Yuning You, Tianlong C

This is the repo for the paper: Leveraging Two Types of Global Graph for Sequential Fashion Recommendation Requirements OS: Ubuntu 16.04 or higher ver

SolvationAnalysis The macroscopic behavior of a liquid is determined by its microscopic structure. For ionic systems, like batteries and many enzymes,

Graphormer By Chengxuan Ying, Tianle Cai, Shengjie Luo, Shuxin Zheng*, Guolin Ke, Di He*, Yanming Shen and Tie-Yan Liu. This repo is the official impl

PyGAS: Auto-Scaling GNNs in PyG PyGAS is the practical realization of our G NN A uto S cale (GAS) framework, which scales arbitrary message-passing GN

Graph-to-Tree Learning for Solving Math Word Problems PyTorch implementation of Graph based Math Word Problem solver described in our ACL 2020 paper G

MOT Tracked object bounding box association (CenterTrack++) New association method based on CenterTrack. Two new branches (Tracked Size and IOU) are a

Sparsity Probe: Analysis tool for Deep Learning Models This repository is a limited implementation of Sparsity Probe: Analysis tool for Deep Learning

InsightFace: 2D and 3D Face Analysis Project on MXNet and PyTorch

[TensorFlow] Protein Interface Prediction using Graph Convolutional Networks Unofficial TensorFlow implementation of Protein Interface Prediction usin

GSDN-F and GSDN-EF This repository provides a reference implementation of GSDN-F and GSDN-EF as described in the paper "Understanding Graph Neural Net

Degree-Quant This repo provides a clean re-implementation of the code associated with the paper Degree-Quant: Quantization-Aware Training for Graph Ne

ProcrustEs-KGE Paddle implementation for Highly Efficient Knowledge Graph Embedding Learning with Orthogonal Procrustes Analysis 🙈 A more detailed re

Sentance Parser Executing the Program Make sure Python 3.6+ is installed. Install requirements $ pip install requirements.txt Run the program: