Python Modelling-biological-systems Resources

MultiWOZ Context-to-Response Evaluation Standardized and easy to use Inform, Success, BLEU ~ See the paper ~ Easy-to-use scripts for standardized eval

Machine Learning Systems Design Read this booklet here. This booklet covers four main steps of designing a machine learning system: Project setup Data

Group members information Member 1: Lixue Liang Member 2: Yuet Lee Chan Member 3: Xinruo Zhang Member 4: Yifei Han User Manual Generate Attack Packets

AI Assistant for Building Reliable, High-performing and Fair Multilingual NLP Systems

PersonaGPT An open-domain conversational agent with many personalities PersonaGPT is an open-domain conversational agent cpable of decoding personaliz

AB-TRAP: building invisibility shields to protect network devices The AB-TRAP framework is applicable to the development of Network Intrusion Detectio

Neural Material Official code repository for the paper: Generative Modelling of BRDF Textures from Flash Images [SIGGRAPH Asia, 2021] Henzler, Deschai

(Py)TOD: Tensor-based Outlier Detection, A General GPU-Accelerated Framework Background: Outlier detection (OD) is a key data mining task for identify

PersonaGPT An open-domain conversational agent with many personalities PersonaGPT is an open-domain conversational agent cpable of decoding personaliz

PyFstab Generator PyFstab Generator is a small Python script to write and generate /etc/fstab files based on yaml file on Unix-like systems. NOTE : Th

Programação de Sistemas Robóticos Miguel Riem Oliveira Universidade de Aveiro 2021-2022 Projeto AtlasCar Projecto RACE IROS 2014 AtlasCar2 ATOM IROS 2

phpipam-dhcp-config-generator This will generate a very basic DHCP config with use of PHPIPAM systems. Requirements PHPIPAM Custom Fields domain_name

CISC/CMPE 204 Modelling Project Welcome to the major project for CISC/CMPE 204 (Fall 2021)! Change this README.md file to summarize your project (few

chimera-bootstrap This is a simple tool for bootstrapping Chimera systems from binaries. For source builds, you want cports. Simple usage: $ # run as

DeLag: Detecting Latency Degradation Patterns in Service-based Systems Replication package of the work "DeLag: Detecting Latency Degradation Patterns

collie Collie is a library for preparing, training, and evaluating implicit deep learning hybrid recommender systems, named after the Border Collie do

Automatic-precautionary-guard automated systems to assist guarding corona Virus precautions for Closed Rooms (e.g. Halls, offices, etc..) what is this

Distributed Synchronization for Python Tutti is a nearly drop-in replacement for python's built-in synchronization primitives that lets you fearlessly

Pharmacokinetic Modelling Group Project A PharmacoKinetic (PK) modelling function for analysis of injected solute dynamics over time, developed by Gro

NVIDIA Merlin NVIDIA Merlin is an open source library designed to accelerate recommender systems on NVIDIA’s GPUs. It enables data scientists, machine

pykoop pykoop is a Koopman operator identification library written in Python. It allows the user to specify Koopman lifting functions and regressors i

AequeVox Replication Package for AequeVox:Automated Fariness Testing for Speech Recognition Systems README under development. Python Packages Required

A Library for Modelling Probabilistic Hierarchical Graphical Models in PyTorch

Accuracy-Diversity Trade-off in Recommender Systems via Graph Convolutions This repository contains the code of the paper "Accuracy-Diversity Trade-of

DANSER-WWW-19 This repository holds the codes for Dual Graph Attention Networks for Deep Latent Representation of Multifaceted Social Effects in Recom

A library of Recommender Systems This repository provides a summary of our research on Recommender Systems. It includes our code base on different rec

Detecting Beneficial Feature Interactions for Recommender Systems (L0-SIGN) This is our implementation for the paper: Su, Y., Zhang, R., Erfani, S., &

KaziText KaziText is a tool for modelling common human errors. It estimates probabilities of individual error types (so called aspects) from grammatic

Perspective-taking and Pragmatics for Generating Empathetic Responses Focused on Emotion Causes Official PyTorch implementation and EmoCause evaluatio

Current build status All platforms: Current release info Name Downloads Version Platforms Hapi - Hydrological library for Python Hapi is an open-sourc

Mathematical modeling is a powerful method for the analysis of complex biological systems. Although there are many researches devoted on produ

Endpoints Quickest API builder in the West! Endpoints is a lightweight REST api framework written in python and used in multiple production systems th

opendrift OpenDrift is a software for modeling the trajectories and fate of objects or substances drifting in the ocean, or even in the atmosphere. Do

EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.

Demonstrate that UMAP and Leiden analysis is not reproducible between different cpu architectures.

MosaicML Composer contains a library of methods, and ways to compose them together for more efficient ML training.

Custom Selenium Chromedriver | Zero-Config | Passes ALL bot mitigation systems (like Distil / Imperva/ Datadadome / CloudFlare IUAM)

DaDRA (day-druh) is a Python library for Data-Driven Reachability Analysis. The main goal of the package is to accelerate the process of computing estimates of forward reachable sets for nonlinear dynamical systems.

1 Python for Power System Analysis Contents 1 Python for Power System Analysis 1.1 About 1.2 Documentation 1.3 Functionality 1.4 Example scripts as Ju

MosaicML Composer MosaicML Composer contains a library of methods, and ways to compose them together for more efficient ML training. We aim to ease th

Collaborative-driven Quantum Feature Selection This repository was developed by Riccardo Nembrini, PhD student at Politecnico di Milano. See the websi

CottonWeeds Deep learning models for classification of 15 common weeds in the southern U.S. cotton production systems. requirements pytorch torchsumma

Few-Shot Bot: Prompt-Based Learning for Dialogue Systems This repository includes the dataset, experiments results, and code for the paper: Few-Shot B

covert-tube A program to control systems remotely by uploading videos to Youtube using Python to create the videos and the listener, emulating some ma

Hydra: An Extensible Fuzzing Framework for Finding Semantic Bugs in File Systems Paper Finding Semantic Bugs in File Systems with an Extensible Fuzzin

GIRAFFE: Representing Scenes as Compositional Generative Neural Feature Fields Project Page | Paper | Supplementary | Video | Slides | Blog | Talk If

Control System Packer is a lightweight, low-level program to transform energy equations into the compact libraries for control systems. Packer supports Python 🐍 , C 💻 and C++ 💻 libraries.

Ancient Greek BERT The first and only available Ancient Greek sub-word BERT model! State-of-the-art post fine-tuning on Part-of-Speech Tagging and Mor

Neural Distance Embeddings for Biological Sequences Official implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTo

Overview PowerGym is a Gym-like environment for Volt-Var control in power distribution systems. The Volt-Var control targets minimizing voltage violat

Markovflow Documentation | Tutorials | API reference | Slack What does Markovflow do? Markovflow is a Python library for time-series analysis via prob

Code and dataset for the EMNLP 2021 Finding paper "Can NLI Models Verify QA Systems’ Predictions?"

Perspective-taking and Pragmatics for Generating Empathetic Responses Focused on Emotion Causes Official PyTorch implementation and EmoCause evaluatio

A ready-to-use curated list of Spectral Indices for Remote Sensing applications. GitHub: https://github.com/davemlz/awesome-ee-spectral-indices Docume

Selene is a Python library and command line interface for training deep neural networks from biological sequence data such as genomes.

Voting This is a repository for voting software built using Choice Coin on the Algorand Network. Our voting software is centered around Decentralized

QRec is a Python framework for recommender systems (Supported by Python 3.7.4 and Tensorflow 1.14+) in which a number of influential and newly state-of-the-art recommendation models are implemented. QRec has a lightweight architecture and provides user-friendly interfaces. It can facilitate model implementation and evaluation.

Installation: pip install lm_dataloader Design Philosophy A library to unify lm dataloading at large scale Simple interface, any tokenizer can be inte

SGLKT-VisDial Pytorch Implementation for the paper: Reasoning Visual Dialog with Sparse Graph Learning and Knowledge Transfer Gi-Cheon Kang, Junseok P

GANs for Biological Image Synthesis This codes implements the ICCV-2017 paper "GANs for Biological Image Synthesis". The paper and its supplementary m

Embark is being developed to provide the firmware security analyzer emba as a containerized service and to ease accessibility to emba regardless of system and operating system.

ETM - R package for Topic Modelling in Embedding Spaces This repository contains an R package called topicmodels.etm which is an implementation of ETM

A "gym" style toolkit for building lightweight Neural Architecture Search systems

ACSC Automatic extrinsic calibration for non-repetitive scanning solid-state LiDAR and camera systems. System Architecture 1. Dependency Tested with U

✨A collaborative music playing systems🎶 where multiple guests can join a room ➡🚪 and enjoy the song🎧 being played.

This project is a community effort in constructing and maintaining an up-to-date beginner-friendly introduction to AutoML, focusing on practical systems. AutoML is a big field, and continues to grow daily. Hence, we cannot hope to provide a comprehensive description of every interesting idea or approach available.

Proteno This is the data release associated with the corresponding NAACL 2021 Paper - Proteno: Text Normalization with Limited Data for Fast Deploymen

OpenCDA OpenCDA is a SIMULATION tool integrated with a prototype cooperative driving automation (CDA; see SAE J3216) pipeline as well as regular autom

TensorFlow Ranking is a library for Learning-to-Rank (LTR) techniques on the TensorFlow platform

Learning to Communicate with Deep Multi-Agent Reinforcement Learning This is a PyTorch implementation of the original Lua code release. Overview This

Monitor the status of computers on a network using the DDS function of ROS2.

Mava: a research framework for distributed multi-agent reinforcement learning Table of Contents Overview Getting Started Supported Environments System

This is my reading list for my PhD in AI, NLP, Deep Learning and more.

KCMTicketFormatter This tools takes the output from https://github.com/fireeye/SSSDKCMExtractor and turns it into properly formatted CCACHE files for

Dpex——用户无感知分布式数据预处理组件 一、前言 随着GPU与CPU的算力差距越来越大以及模型训练时的预处理Pipeline变得越来越复杂，CPU部分的数据预处理已经逐渐成为了模型训练的瓶颈所在，这导致单机的GPU配置的提升并不能带来期望的线性加速。预处理性能瓶颈的本质在于每个GPU能够使用的C

How Robust are Fact Checking Systems on Colloquial Claims? Official PyTorch implementation of our NAACL paper: Byeongchang Kim*, Hyunwoo Kim*, Seokhee

ASVspoof 2021 Baseline Systems Baseline systems are grouped by task: Speech Deepfake (DF) Logical Access (LA) Physical Access (PA) Please find more de

Recommendation systems are among most widely preffered marketing strategies. Their popularity comes from close prediction scores obtained from relationships of users and items. In this project, two recommendation systems are used for two different datasets: Association Recommendation Learning and Collaborative Filtering. Please read the description for more info.

FINN.no Recommender Systems Slate Dataset This repository accompany the paper "Dynamic Slate Recommendation with Gated Recurrent Units and Thompson Sa

What is being transferred in transfer learning? This repo contains the code for the following paper: Behnam Neyshabur*, Hanie Sedghi*, Chiyuan Zhang*.

LSO - Linux Swap Operator Türkçe - LSO Nedir? LSO, diğer adıyla Linux Swap Operator Linux işletim sistemleri için Swap alanını yönetebileceğiniz hem G

Cable Driven Parallel Robots (CDPR) is also known as Cable-Suspended Robots are the emerging and flexible end effector manipulation system. Cable-driven parallel robots (CDPRs) are categorized as a type of parallel manipulators

Intruder-Detection Intruder detection systems are common place now, and readily available in industry, but how do they work? They must detect people a

Fusion-DHL: WiFi, IMU, and Floorplan Fusion for Dense History of Locations in Indoor Environments Paper: arXiv (ICRA 2021) Video : https://youtu.be/CC

Action-Based Conversations Dataset (ABCD) This respository contains the code and data for ABCD (Chen et al., 2021) Introduction Whereas existing goal-

When2com: Multi-Agent Perception via Communication Graph Grouping This is the PyTorch implementation of our paper: When2com: Multi-Agent Perception vi

Collaborative Variational Bandwidth Auto-encoder The codes are associated with the following paper: Collaborative Variational Bandwidth Auto-encoder f

Asymmetric Tri-training for Debiasing Missing-Not-At-Random Explicit Feedback About This repository accompanies the real-world experiments conducted i

Stream Framework Activity Streams & Newsfeeds Stream Framework is a Python library which allows you to build activity streams & newsfeeds using Cassan

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

paper list in the area of reinforcenment learning for recommendation systems

Assessing Dialogue Systems with Distribution Distances [arXiv][code] We propose to measure the performance of a dialogue system by computing the distr

Civsim Introduction Civsim is a basic civilisation simulation and modelling system built in Python 3.8. It requires the following packages: perlin_noi

NVIDIA Merlin is an open source library providing end-to-end GPU-accelerated recommender systems, from feature engineering and preprocessing to training deep learning models and running inference in production.

The PyTorch-Kaldi Speech Recognition Toolkit PyTorch-Kaldi is an open-source repository for developing state-of-the-art DNN/HMM speech recognition sys

Texar-PyTorch is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar

Physics-Aware Training (PAT) is a method to train real physical systems with backpropagation. It was introduced in Wright, Logan G. & Onodera, Tatsuhiro et al. (2021)1 to train Physical Neural Networks (PNNs) - neural networks whose building blocks are physical systems.

Graph Evolving Meta-Learning for Low-resource Medical Dialogue Generation Code to be further cleaned... This repo contains the code of the following p

Structural basis for solubility in protein expression systems Large-scale protein production for biotechnology and biopharmaceutical applications rely

collie_recs Collie is a library for preparing, training, and evaluating implicit deep learning hybrid recommender systems, named after the Border Coll