106 Repositories
Python protein-pretraining Libraries
Code for pre-training CharacterBERT models (as well as BERT models).
Pre-training CharacterBERT (and BERT) This is a repository for pre-training BERT and CharacterBERT. DISCLAIMER: The code was largely adapted from an o
31 Dec 5, 2022
Repository providing a wide range of self-supervised pretrained models for computer vision tasks.
Hierarchical Pretraining: Research Repository This is a research repository for reproducing the results from the project "Self-supervised pretraining
53 Nov 9, 2022
Implementation of COCO-LM, Correcting and Contrasting Text Sequences for Language Model Pretraining, in Pytorch
COCO LM Pretraining (wip) Implementation of COCO-LM, Correcting and Contrasting Text Sequences for Language Model Pretraining, in Pytorch. They were a
44 Jul 28, 2022
Differentiable molecular simulation of proteins with a coarse-grained potential
Differentiable molecular simulation of proteins with a coarse-grained potential This repository contains the learned potential, simulation scripts and
44 Dec 10, 2022
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package
trRosetta - Pytorch (wip) Implementation of trRosetta and trDesign for Pytorch, made into a convenient package
67 Dec 17, 2022
Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pytorch. Idea proposed and accepted at ICLR 2021
Geometric Vector Perceptron Implementation of Geometric Vector Perceptron, a simple circuit with 3d rotation equivariance for learning over large biom
59 Nov 24, 2022