Python Protein-visualization Resources

Explainable CNNs 📦 Flexible visualization package for generating layer-wise explanations for CNNs. It is a common notion that a Deep Learning model i

Course materials for: Geospatial Data Science These course materials cover the lectures for the course held for the first time in spring 2022 at IT Un

Bloxs Bloxs is a simple python package that helps you display information in an attractive way (formed in blocks). Perfect for building dashboards, re

English 中文版 TransBigData Introduction TransBigData is a Python package developed for transportation spatio-temporal big data processing, analysis and

12_Python_Seaborn_Module Introduction 👋 From the website, “Seaborn is a Python data visualization library based on matplotlib. It provides a high-lev

Molecular Docking integrated in Jupyter Notebooks Description | Citation | Installation | Examples | Limitations | License Table of content Descriptio

Factorio Blueprint Visualizer I love the game Factorio and I really like the look of factories after growing for many hours or blueprints after tweaki

patterns-finder Simple, Fast, Powerful and Easily extensible python package for extracting patterns from text, with over than 60 predefined Regular Ex

RITA: a Study on Scaling Up Generative Protein Sequence Models RITA is a family of autoregressive protein models, developed by a collaboration of Ligh

Regress.me Regress.me is an easy to use data visualization tool powered by Dash/Plotly. Regress.me.-.Google.Chrome.2022-05-10.15-58-59.mp4 Get Started

Website • Docs • Community Slack 💡 What is NannyML? NannyML is an open-source python library that allows you to estimate post-deployment model perfor

OTC CatchUp Dashboard A Power BI/Google Studio dashboard analyzing OTC CatchUps. File Contents * ├───data ├───old summaries ─── *.md ├

SentimentArcs - Emotion in Text An end-to-end pipeline based on Jupyter notebooks to detect, extract, process and anlayze emotion over time in text. E

skillmap A tool for generating skill map/tree like diagram. What is a skill map/tree? Skill tree is a term used in video games, and it can be used for

ManimML ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.

Beyond the Basics: Data Visualization in Python The human brain excels at finding patterns in visual representations, which is why data visualizations

ipyvizzu - Jupyter notebook integration of Vizzu. Tutorial · Examples · Repository About The Project ipyvizzu is the Jupyter Notebook integration of V

Website • Docs • Blog • LinkedIn • Community Slack ML powered analytics engine for outlier detection and root cause analysis ✨ What is Chaos Genius? C

Protein GLM (wip) Implementation of a protein autoregressive language model, but with autoregressive infilling objective (editing subsequences capabil

Bunker-Website This is a GUI version of the Bunker-API along with some visualization charts to see your attendance progress. Website Link Check out th

GVP Transformer (wip) Implementation of the GVP-Transformer, which was used in the paper Learning inverse folding from millions of predicted structure

Generating 3D Molecules for Target Protein Binding This is the official implementation of the GraphBP method proposed in the following paper. Meng Liu

COVID-19 in East Asian Megacities This repository holds original Python code for processing and visualization COVID-19 data in East Asian megacities a

Molecular Nodes 🧬 🔬 💻 Buy Me a Coffee to Keep Development Going! Join a Community of Blender SciVis People! What is Molecular Nodes? Molecular Node

CamViz Overview // Installation // Demos // License Overview CamViz is a visualization library developed by the TRI-ML team with the goal of providing

handm_data_visualize_app Data visualization app by streamlit for H&M competition in kaggle. competition page: https://www.kaggle.com/competitions/h-an

Description: ProtFeat is designed to extract the protein features by employing POSSUM and iFeature python-based tools. ProtFeat includes a total of 39

DataAnalysis DataAnalysis: Some data analysis projects in charles_pikachu You can star this repository to keep track of the project if it's helpful fo

OS_Algo_Visualization Operating system algorithm visualization using python pyga

Vaex-Big-Data-Analytics-for-Airline-data A Python notebook (ipynb) created in Jupyter Notebook, which utilizes the Vaex library for Big Data Analytics

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

We developed a method animating a statistical 3D human model for biomechanical analysis to increase accessibility for non-experts, like patients, athletes, or designers.

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both multi-core CPUs and GPUs. To achieve this, FAST use modern C++, OpenCL and OpenGL.

Customizing Visual Styles in Plotly Code for a workshop originally developed for an Unconference session during the Outlier Conference hosted by Data

B4PPI Benchmarking Pipeline for the Prediction of Protein-Protein Interactions How this benchmarking pipeline has been built, and how to use it, is de

It is mainly for data visualization projects of Atmospheric Science, Marine Science, Environmental Science or other majors.

RE results graph visualization and company clustering Installation pip install -r requirements.txt python -m nltk.downloader stopwords python3.7 main.

py-self-organizing-maps Simple implementation of self-organizing maps (SOMs) A SOM is an unsupervised method for learning a mapping from a discrete ne

Project: Netflix Data Analysis and Visualization with Python Table of Contents General Info Installation Demo Usage and Main Functionalities Contribut

polyprotein_stats A small tool to test and visualize protein embeddings and amino acid proportions. Currently deployed on streamlit.io. Given a set of

Data Analysis: Data Visualization of Airlines Anderson Cruz | London-UK | Linkedin | Nowa Capital Project: Traffic Airlines Airline Reporting Carrier

Source code for EquiDock: Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking (ICLR 2022) Please cite "Independent SE(3)-Equivar

This script is responsible for the operation of the program, it is responsible for both creating the GUI and the process of processing images from dicom files. The program is based on the use of the PyQt5 library, on the basis of which the entire interface containing the appropriate buttons and functions was created.

🔥 Olympics Data Analysis 🔥 In Data Science field, there is a big topic before creating a model for future prediction is Data Analysis. We can find o

Data-Visualization-Projects Collection of data visualizing projects through Tableau, Data Wrapper, and Power BI Indigenous-Brands-Social-Movements Pyt

Example script to visualize topographic data, earthquake data, and tomographic data on a map

chem: collection of mostly python code for molecular visualization, QM/MM, FEP,

Acceder al código desde Google Colab para poder ver de manera adecuada todas las visualizaciones y poder interactuar con ellas. Link de acceso: https:

Acceder al código desde Google Colab para poder ver de manera adecuada todas las visualizaciones y poder interactuar con ellas. Links de acceso: Noteb

GNN_PPI Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction". Lear

Mito Monorepo Mito is a spreadsheet that lives inside your JupyterLab notebooks. It allows you to edit Pandas dataframes like an Excel file, and gener

Data-Analysis-Web-App Data Analysis Web App can analysis data in multiple formates(csv, txt, xls, xlsx, ods, odt) and gives shows you the analysis in

OntoProtein This is the implement of the paper "OntoProtein: Protein Pretraining With Ontology Embedding". OntoProtein is an effective method that mak

ReLSO Improved Fitness Optimization Landscapes for Sequence Design Description Citation How to run Training models Original data source Description In

coldcuts coldcuts is an R package that allows you to draw and plot automatically segmentations from 3D voxel arrays. The name is inspired by one of It

asciiMOL A basic molecule viewer written in Python, using curses; Thus, meant for linux terminals. This is an alpha version, featuring: Opening defaul

The purpose of this project is create a classification model capable of accurately predicting the price of secondhand cars. The data used for model building is open source and has been added to this repository. Most packages used are usually pre-installed in most developed environments and tools like collab, jupyter, etc. This can be useful for people looking to enhance the way the code their predicitve models and efficient ways to deal with tabular data!

The purpose of this project is create a predictive model capable of identifying the probability of a person securing an admit based on their personal profile parameters. Simplified visualisations have been created for understanding the data. 80% accuracy was achieved on the test set.

Audio Source Separation is the process of separating a mixture into isolated sounds from individual sources (e.g. just the lead vocals).

Boltzmann visualization - Visualize the Boltzmann distribution for simple quantum models of molecular motion

Task Overview | Installation Instructions | Link to Module 2 Introduction Experience Technology at JP Morgan Chase Try out what real work is like in t

Cerebro 2 A web-based visualization and debugging platform for NuPIC. Usage Set up cerebro2.server to export your model state. Then, run: cd static py

Create charts with Python in a very similar way to creating charts using Chart.js. The charts created are fully configurable, interactive and modular and are displayed directly in the output of the the cells of your jupyter notebook environment.

visualize_ML visualize_ML is a python package made to visualize some of the steps involved while dealing with a Machine Learning problem. It is build

TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow (Google's Deep Learning framework) with breakpoints + real-time visualization of the data flowing through the computational graph.

PROTEIN-EXPRESSION-ANALYSIS-FOR-DOWN-SYNDROME Down syndrome (DS) is a chromosomal disorder where organisms have an extra chromosome 21, sometimes know

Python-Sreamlit-Duplicate-Records-Finder-Remover Streamlit is an open-source Python library that makes it easy to create and share beautiful, custom w

Algo_Visualizer This project is an Algorithm Visualizer where a user can visualize common algorithms like "Bubble Sort", "Merge Sort", "Quick Sort", "

This repository contains my work related to my project where I scraped data on the most popular machine learning and deep learning GitHub repositories in order to further visualize and analyze it.

Minimalistic tool to visualize how the routes to a given target domain change over time, feat. Python 3.10 & mermaid.js

Monitor deep learning model training and hardware usage from mobile. 🔥 Features Monitor running experiments from mobile phone (or laptop) Monitor har

Man-Utd-Fan-Satisfaction-Levels-First-19-games A visualization of how much Manchester United fans enjoyed each game from the first half of the 21/22 P

Visualization Website by using Dash and Heroku You can visit the website https://payroll-expense-analysis.herokuapp.com/ In this project, I am interes

100-Day-With-Python 100 Days of Code - The Complete Python Pro Bootcamp for 2022. In this course, I spend with python language over 100 days, and I up

Python This is a Python data processing, analysis, visualization and data operations of the source code warehouse, book ISBN: 9787115527592 Descriptio

Mercury Share your Python notebooks with others Easily convert your Python notebooks into interactive web apps by adding parameters in YAML. Simply ad

Sorting-Algorithms - All information about sorting algorithm you need and you can visualize the code tracer

AWESOME DATA SCIENCE An open source Data Science repository to learn and apply towards solving real world problems. This is a shortcut path to start s

IPL-data-analysis This project consists of data analysis and data visualization of all IPL seasons from 2008 to 2019 and answering the most asked ques

This case study aims to identify patterns which indicate if a client has difficulty paying their installments which may be used for taking actions such as denying the loan, reducing the amount of loan, lending (to risky applicants) at a higher interest rate, etc

Using the provided dataset which includes various book features, in order to predict the price of books, using various proposed methods and models.

ScienceGallery The repository is my code for various types of data visualization cases based on the Matplotlib library. It summarizes the code and cas

RFDesign: Protein hallucination and inpainting with RoseTTAFold Jue Wang (juewan

Perform semi automated exploratory data analysis, feature engineering and feature selection on provided dataset by visualizing every possibilities on each step and assisting the user to make a meaningful decision to achieve a low-bias and low-variance model.

2019-indian-election-eda Exploratory Data Analysis of the 2019 Indian General Elections using a dataset from Kaggle. This project is a part of the Cou

{ATAM} Active Transport Analytics Model Active Transport Analytics Model (“ATAM”

{ATAM} Active Transport Analytics Model Active Transport Analytics Model (“ATAM”) is a new strategic transport modelling and data visualization framew

D-Analyst : High Performance Visualization Tool D-Analyst is a high performance data visualization built with python and based on OpenGL. It allows to

Free Unified Rendering in Python A software library for scientific visualization in Python. General Information • Key Features • Installation • How to

MLP Hidden Layer Activation Visualization To gain some intuition about the internal representation of simple multi-layer perceptrons (MLPs) I trained

Trans_attention_vis This is a super simple visualization toolbox (script) for transformer attention visualization ✌ 1. How to prepare your attention m

AnnotateChange Welcome to the repository of the "AnnotateChange" application. This application was created to collect annotations of time series data

Medical Appointments No-shows Why do 20% of patients miss their scheduled appointments? A person makes a doctor appointment, receives all the instruct

Amusement Park Ride Safety Analysis Project Proposal We have chosen to look into amusement park data to explore ride safety relationships visually, in

Visrl Visrl (pronounced "visceral") is a simple wrapper to analyse and visualise reinforcement learning agents' behaviour in the environment. Reinforc

A python visualization of the A* path finding algorithm. It allows you to pick your start, end location and make obstacles and then view the process of finding the shortest path. You can also choose to include or exclude diagonal movement.

DAT8 Course Repository Course materials for General Assembly's Data Science course in Washington, DC (8/18/15 - 10/29/15). Instructor: Kevin Markham (

MNE-Python MNE-Python software is an open-source Python package for exploring, visualizing, and analyzing human neurophysiological data such as MEG, E

PyExplainer PyExplainer is a local rule-based model-agnostic technique for generating explanations (i.e., why a commit is predicted as defective) of J

Use PyMove and go much further Information Package Status License Python Version Platforms Build Status PyPi version PyPi Downloads Conda version Cond