122 Repositories
Python scientific-articles Libraries
AI Summer's complete catalog of articles
Learn Deep Learning with AI Summer A collection of all articles (almost 100) written for the AI Summer blog organized by topic. Deep Learning Theory M
Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2021
RSNA AI Deep Learning Lab 2021 Intro Welcome Deep Learners! This document provides all the information you need to participate in the RSNA AI Deep Lea
Scientific Programming: A Crash Course
Scientific Programming: A Crash Course Welcome to the Scientific Programming course. My name is Jon Carr and I am a postdoc in Davide Crepaldi's lab.
Citation Intent Classification in scientific papers using the Scicite dataset an Pytorch
Citation Intent Classification Table of Contents About the Project Built With Installation Usage Acknowledgments About The Project Citation Intent Cla
GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.
The GT4SD (Generative Toolkit for Scientific Discovery) is an open-source platform to accelerate hypothesis generation in the scientific discovery process. It provides a library for making state-of-the-art generative AI models easier to use.
Arxiv harvester - Poor man's simple harvester for arXiv resources
Poor man's simple harvester for arXiv resources This modest Python script takes
Twitter bot that uses NLP models to summarize news articles referenced in a user's twitter timeline
Twitter-News-Summarizer Twitter bot that uses NLP models to summarize news articles referenced in a user's twitter timeline 1.) Extracts all tweets fr
This code is the implementation of the paper "Coherence-Based Distributed Document Representation Learning for Scientific Documents".
Introduction This code is the implementation of the paper "Coherence-Based Distributed Document Representation Learning for Scientific Documents". If
FURY - A software library for scientific visualization in Python
Free Unified Rendering in Python A software library for scientific visualization in Python. General Information • Key Features • Installation • How to
Listing arxiv - Personalized list of today's articles from ArXiv
Personalized list of today's articles from ArXiv Print and/or send to your gmail
ruptures: change point detection in Python
Welcome to ruptures ruptures is a Python library for off-line change point detection. This package provides methods for the analysis and segmentation
A curated list of the top 10 computer vision papers in 2021 with video demos, articles, code and paper reference.
The Top 10 Computer Vision Papers of 2021 The top 10 computer vision papers in 2021 with video demos, articles, code, and paper reference. While the w
Finite Element Analysis
FElupe - Finite Element Analysis FElupe is a Python 3.6+ finite element analysis package focussing on the formulation and numerical solution of nonlin
News-Articles-and-Essays - NLP (Topic Modeling and Clustering)
NLP T5 Project proposal Topic Modeling and Clustering of News-Articles-and-Essays Students: Nasser Alshehri Abdullah Bushnag Abdulrhman Alqurashi OVER
Newsscraper - A simple Python 3 module to get crypto or news articles and their content from various RSS feeds.
NewsScraper A simple Python 3 module to get crypto or news articles and their content from various RSS feeds. 🔧 Installation Clone the repo locally.
Memory-efficient optimum einsum using opt_einsum planning and PyTorch kernels.
opt-einsum-torch There have been many implementations of Einstein's summation. numpy's numpy.einsum is the least efficient one as it only runs in sing
Scientific measurement library for instruments, experiments, and live-plotting
PyMeasure scientific package PyMeasure makes scientific measurements easy to set up and run. The package contains a repository of instrument classes a
An open-source systems and controls toolbox for Python3
harold A control systems package for Python=3.6. Introduction This package is written with the ambition of providing a full-fledged control systems s
OpenQuake's Engine for Seismic Hazard and Risk Analysis
OpenQuake Engine The OpenQuake Engine is an open source application that allows users to compute seismic hazard and seismic risk of earthquakes on a g
Python package for the analysis and visualisation of finite-difference fields.
discretisedfield Marijan Beg1,2, Martin Lang2, Samuel Holt3, Ryan A. Pepper4, Hans Fangohr2,5,6 1 Department of Earth Science and Engineering, Imperia
A Boilerplate repo for Scientific Python Open Science projects
A Boilerplate repo for Scientific Python Open Science projects Installation Clone this repo If you need a fresh python environment, run $ conda env cr
SIR model parameter estimation using a novel algorithm for differentiated uniformization.
TenSIR Parameter estimation on epidemic data under the SIR model using a novel algorithm for differentiated uniformization of Markov transition rate m
SciPy library main repository
SciPy SciPy (pronounced "Sigh Pie") is an open-source software for mathematics, science, and engineering. It includes modules for statistics, optimiza
freeCodeCamp Scientific Computing with Python Project for Certification.
Time_Calculator_freeCodeCamp freeCodeCamp Scientific Computing with Python Project for Certification. Write a function named add_time that takes in tw
freeCodeCamp Scientific Computing with Python Project for Certification.
Polygon_Area_Calculator freeCodeCamp Python Project freeCodeCamp Scientific Computing with Python Project for Certification. In this project you will
Twitter feed of newly published articles in Limnology
limnopapers Code to monitor limnology RSS feeds and tweet new articles. Scope The keywords and journal choices herein aim to focus on limnology (the s
Make scripted visualizations in blender
Scripted visualizations in blender The goal of this project is to script 3D scientific visualizations using blender. To achieve this, we aim to bring
Efficient and Scalable Physics-Informed Deep Learning and Scientific Machine Learning on top of Tensorflow for multi-worker distributed computing
Notice: Support for Python 3.6 will be dropped in v.0.2.1, please plan accordingly! Efficient and Scalable Physics-Informed Deep Learning Collocation-
Physics-Informed Neural Networks (PINN) and Deep BSDE Solvers of Differential Equations for Scientific Machine Learning (SciML) accelerated simulation
NeuralPDE NeuralPDE.jl is a solver package which consists of neural network solvers for partial differential equations using scientific machine learni
Simulation and Parameter Estimation in Geophysics
Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
yt is an open-source, permissively-licensed Python library for analyzing and visualizing volumetric data.
The yt Project yt is an open-source, permissively-licensed Python library for analyzing and visualizing volumetric data. yt supports structured, varia
The fundamental package for scientific computing with Python.
NumPy is the fundamental package needed for scientific computing with Python. Website: https://www.numpy.org Documentation: https://numpy.org/doc Mail
Plot-configurations for scientific publications, purely based on matplotlib
TUEplots Plot-configurations for scientific publications, purely based on matplotlib. Usage Please have a look at the examples in the example/ directo
NewsMTSC: (Multi-)Target-dependent Sentiment Classification in News Articles
NewsMTSC: (Multi-)Target-dependent Sentiment Classification in News Articles NewsMTSC is a dataset for target-dependent sentiment classification (TSC)
A script to check for common mistakes in LaTeX source files of scientific papers.
LaTeX Paper Linter This script checks for common mistakes in LaTeX source files of scientific papers. Usage python3 paperlint.py file.tex [-i/x inc
pubmex.py - a script to get a fancy paper title based on given DOI or PMID
pubmex.py is a script to get a fancy paper title based on given DOI or PMID (can be also combined with macOS Finder)
A fast, pure python implementation of the MuyGPs Gaussian process realization and training algorithm.
Fast implementation of the MuyGPs Gaussian process hyperparameter estimation algorithm MuyGPs is a GP estimation method that affords fast hyperparamet
Dataset and Source code of paper 'Enhancing Keyphrase Extraction from Academic Articles with their Reference Information'.
Enhancing Keyphrase Extraction from Academic Articles with their Reference Information Overview Dataset and code for paper "Enhancing Keyphrase Extrac
A feishu bot daily push arxiv latest articles.
arxiv-feishu-bot We develop A simple feishu bot script daily pushes arxiv latest articles. His effect is as follows: Of course, you can also use other
Data imputations library to preprocess datasets with missing data
Impyute is a library of missing data imputation algorithms. This library was designed to be super lightweight, here's a sneak peak at what impyute can do.
Fast EMD for Python: a wrapper for Pele and Werman's C++ implementation of the Earth Mover's Distance metric
PyEMD: Fast EMD for Python PyEMD is a Python wrapper for Ofir Pele and Michael Werman's implementation of the Earth Mover's Distance that allows it to
Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization
Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization
A set of useful perceptually uniform colormaps for plotting scientific data
Colorcet: Collection of perceptually uniform colormaps Build Status Coverage Latest dev release Latest release Docs What is it? Colorcet is a collecti
Scikit-Garden or skgarden is a garden for Scikit-Learn compatible decision trees and forests.
Scikit-Garden or skgarden (pronounced as skarden) is a garden for Scikit-Learn compatible decision trees and forests.
A Python package for performing pore network modeling of porous media
Overview of OpenPNM OpenPNM is a comprehensive framework for performing pore network simulations of porous materials. More Information For more detail
AI-powered literature discovery and review engine for medical/scientific papers
AI-powered literature discovery and review engine for medical/scientific papers paperai is an AI-powered literature discovery and review engine for me
topic modeling on unstructured data in Space news articles retrieved from the Guardian (UK) newspaper using API
NLP Space News Topic Modeling Photos by nasa.gov (1, 2, 3, 4, 5) and extremetech.com Table of Contents Project Idea Data acquisition Primary data sour
This repository is maintained for the scientific paper tittled " Study of keyword extraction techniques for Electric Double Layer Capacitor domain using text similarity indexes: An experimental analysis "
kwd-extraction-study This repository is maintained for the scientific paper tittled " Study of keyword extraction techniques for Electric Double Layer
Scientific Visualization: Python + Matplotlib
An open access book on scientific visualization using python and matplotlib
Python bindings for JIGSAW: a Delaunay-based unstructured mesh generator.
JIGSAW: An unstructured mesh generator JIGSAW is an unstructured mesh generator and tessellation library; designed to generate high-quality triangulat
Scrapes all articles and their headlines from theonion.com
The Onion Article Scraper Scrapes all articles and their headlines from the satirical news website https://www.theonion.com Also see Clickhole Article
MetPy is a collection of tools in Python for reading, visualizing and performing calculations with weather data.
MetPy MetPy is a collection of tools in Python for reading, visualizing and performing calculations with weather data. MetPy follows semantic versioni
Powerful, efficient particle trajectory analysis in scientific Python.
freud Overview The freud Python library provides a simple, flexible, powerful set of tools for analyzing trajectories obtained from molecular dynamics
An awesome tool to save articles from RSS feed to Pocket automatically.
RSS2Pocket An awesome tool to save articles from RSS feed to Pocket automatically. About the Project I used to use IFTTT to save articles from RSS fee
Scrape plants scientific name information from Agroforestry Species Switchboard 2.0.
Agroforestry Species Switchboard 2.0 Scraper Scrape plants scientific name information from Species Switchboard 2.0. Requirements python = 3.10 (you
A python module for scientific analysis of 3D objects based on VTK and Numpy
A lightweight and powerful python module for scientific analysis and visualization of 3d objects.
Freecodecamp Scientific Computing with Python Certification; Solution for Challenge 2: Time Calculator
Assignment Write a function named add_time that takes in two required parameters and one optional parameter: a start time in the 12-hour clock format
Can we visualize a large scientific data set with a surrogate model? We're building a GAN for the Earth's Mantle Convection data set to see if we can!
EarthGAN - Earth Mantle Surrogate Modeling Can a surrogate model of the Earth’s Mantle Convection data set be built such that it can be readily run in
Generate custom detailed survey paper with topic clustered sections and proper citations, from just a single query in just under 30 mins !!
Auto-Research A no-code utility to generate a detailed well-cited survey with topic clustered sections (draft paper format) and other interesting arti
This python module allows to extract data from the RAW-file-format produces by devices from Thermo Fisher Scientific.
fisher_py This Python module allows access to Thermo Orbitrap raw mass spectrometer files. Using this library makes it possible to automate the analys
An extension to detect if the articles content match its title.
Clickbait Detector An extension to detect if the articles content match its title. This was developed in a period of 24-hours in a hackathon called 'H
EMNLP 2021 Findings' paper, SCICAP: Generating Captions for Scientific Figures
SCICAP: Scientific Figures Dataset This is the Github repo of the EMNLP 2021 Findings' paper, SCICAP: Generating Captions for Scientific Figures (Hsu
Differentiable scientific computing library
xitorch: differentiable scientific computing library xitorch is a PyTorch-based library of differentiable functions and functionals that can be widely
Deep learning library for solving differential equations and more
DeepXDE Voting on whether we should have a Slack channel for discussion. DeepXDE is a library for scientific machine learning. Use DeepXDE if you need
Using machine learning to predict and analyze high and low reader engagement for New York Times articles posted to Facebook.
How The New York Times can increase Engagement on Facebook Using machine learning to understand characteristics of news content that garners "high" Fa
a pytorch implementation of auto-punctuation learned character by character
Learning Auto-Punctuation by Reading Engadget Articles Link to Other of my work 🌟 Deep Learning Notes: A collection of my notes going from basic mult
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
AICSImageIO Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python Features Supports reading metadata and imaging
Glue is a python project to link visualizations of scientific datasets across many files.
Glue Glue is a python project to link visualizations of scientific datasets across many files. Click on the image for a quick demo: Features Interacti
A Dataset for Direct Quotation Extraction and Attribution in News Articles.
DirectQuote - A Dataset for Direct Quotation Extraction and Attribution in News Articles DirectQuote is a corpus containing 19,760 paragraphs and 10,3
SciBERT is a BERT model trained on scientific text.
SciBERT is a BERT model trained on scientific text.
A repository for collating all the resources such as articles, blogs, papers, and books related to Bayesian Statistics.
A repository for collating all the resources such as articles, blogs, papers, and books related to Bayesian Statistics.
EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.
EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.
A Happy and lightweight Python Package that Provides an API to search for articles on Google News and returns a JSON response.
A Happy and lightweight Python Package that Provides an API to search for articles on Google News and returns a JSON response.
Open Data Cube analyses continental scale Earth Observation data through time
Open Data Cube Core Overview The Open Data Cube Core provides an integrated gridded data analysis environment for decades of analysis ready earth obse
Toolchest provides APIs for scientific and bioinformatic data analysis.
Toolchest Python Client Toolchest provides APIs for scientific and bioinformatic data analysis. It allows you to abstract away the costliness of runni
Scientific Computation Methods in C and Python (Open for Hacktoberfest 2021)
Sci - cpy README is a stub. Do expand it. Objective This repository is meant to be a ready reference for scientific computation methods. Do ⭐ it if yo
SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications.
Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications
a pytorch implementation of auto-punctuation learned character by character
Learning Auto-Punctuation by Reading Engadget Articles Link to Other of my work 🌟 Deep Learning Notes: A collection of my notes going from basic mult
Scitizen - Help scientific research for the benefit of mankind and humanity 🔬
Scitizen - Help scientific research for the benefit of mankind and humanity 🔬 Scitizen has been built from the ground up to give everyone the possibi
Official Pytorch implementation of ICLR 2018 paper Deep Learning for Physical Processes: Integrating Prior Scientific Knowledge.
Deep Learning for Physical Processes: Integrating Prior Scientific Knowledge: Official Pytorch implementation of ICLR 2018 paper Deep Learning for Phy
2nd solution of ICDAR 2021 Competition on Scientific Literature Parsing, Task B.
TableMASTER-mmocr Contents About The Project Method Description Dependency Getting Started Prerequisites Installation Usage Data preprocess Train Infe
IDRLnet, a Python toolbox for modeling and solving problems through Physics-Informed Neural Network (PINN) systematically.
IDRLnet IDRLnet is a machine learning library on top of PyTorch. Use IDRLnet if you need a machine learning library that solves both forward and inver
DRIFT is a tool for Diachronic Analysis of Scientific Literature.
About DRIFT is a tool for Diachronic Analysis of Scientific Literature. The application offers user-friendly and customizable utilities for two modes:
A list of awesome PyTorch scholarship articles, guides, blogs, courses and other resources.
Awesome PyTorch Scholarship Resources A collection of awesome PyTorch and Python learning resources. Contributions are always welcome! Course Informat
Scientific color maps and standardization tools
Scicomap is a package that provides scientific color maps and tools to standardize your favourite color maps if you don't like the built-in ones. Scicomap currently provides sequential, bi-sequential, diverging, circular, qualitative and miscellaneous color maps. You can easily draw examples, compare the rendering, see how colorblind people will perceive the color maps. I will illustrate the scicomap capabilities below.
A scientific and useful toolbox, which contains practical and effective long-tail related tricks with extensive experimental results
Bag of tricks for long-tailed visual recognition with deep convolutional neural networks This repository is the official PyTorch implementation of AAA
Python with the scientific stack, compiled to WebAssembly.
Pyodide may be used in any context where you want to run Python inside a web browser.
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks Molecular interaction networks are powerful resources for the discovery. While dee
A curated list of awesome packages, articles, and other cool resources from the Wagtail community.
Awesome Wagtail A curated list of awesome packages, articles, and other cool resources from the Wagtail community. Wagtail is a Python CMS powered by
A complete guide to start and improve in machine learning (ML)
A complete guide to start and improve in machine learning (ML), artificial intelligence (AI) in 2021 without ANY background in the field and stay up-to-date with the latest news and state-of-the-art techniques!
xitorch: differentiable scientific computing library
xitorch is a PyTorch-based library of differentiable functions and functionals that can be widely used in scientific computing applications as well as deep learning.
Polyglot Machine Learning example for scraping similar news articles.
Polyglot Machine Learning example for scraping similar news articles In this example, we will see how we can work with Machine Learning applications w
monolish: MONOlithic Liner equation Solvers for Highly-parallel architecture
monolish is a linear equation solver library that monolithically fuses variable data type, matrix structures, matrix data format, vendor specific data transfer APIs, and vendor specific numerical algebra libraries.
ArrayFire: a general purpose GPU library.
ArrayFire is a general-purpose library that simplifies the process of developing software that targets parallel and massively-parallel architectures i
CUDA integration for Python, plus shiny features
PyCUDA lets you access Nvidia's CUDA parallel computation API from Python. Several wrappers of the CUDA API already exist-so what's so special about P
A machine learning software for extracting information from scholarly documents
GROBID GROBID documentation Visit the GROBID documentation for more detailed information. Summary GROBID (or Grobid, but not GroBid nor GroBiD) means
A Happy and lightweight Python Package that searches Google News RSS Feed and returns a usable JSON response and scrap complete article - No need to write scrappers for articles fetching anymore
GNews 🚩 A Happy and lightweight Python Package that searches Google News RSS Feed and returns a usable JSON response 🚩 As well as you can fetch full
A collection of full-stack resources for programmers.
A collection of full-stack resources for programmers.
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Spack Spack is a multi-platform package manager that builds and installs multiple versions and configurations of software. It works on Linux, macOS, a
Sequential model-based optimization with a `scipy.optimize` interface
Scikit-Optimize Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. It implements