Python Graph-Bert Resources

☕ CoFiPruning: Structured Pruning Learns Compact and Accurate Models This repository contains the code and pruned models for our ACL'22 paper Structur

LinkBERT: A Knowledgeable Language Model Pretrained with Document Links This repo provides the model, code & data of our paper: LinkBERT: Pretraining

HugsVision is an open-source and easy to use all-in-one huggingface wrapper for computer vision. The goal is to create a fast, flexible and user-frien

DeltaConv [Paper] [Project page] Code for the SIGGRAPH 2022 paper "DeltaConv: Anisotropic Operators for Geometric Deep Learning on Point Clouds" by Ru

FantasyBert English | 中文 Introduction An easy-to-use framework for BERT models, with trainers, various NLP tasks and detailed annonations. You can imp

Multi-Graph Fusion Networks for Urban Region Embedding (IJCAI-22) This is the implementation of Multi-Graph Fusion Networks for Urban Region Embedding

Drug Interaction Prediction with Tigerlily Documentation | Example Notebook | Youtube Video | Project Report Tigerlily is a TigerGraph based system de

Structured Sparse R-CNN for Direct Scene Graph Generation Our paper Structured Sparse R-CNN for Direct Scene Graph Generation has been accepted by CVP

PrimeKG Website | bioRxiv Paper | Harvard Dataverse Precision Medicine Knowledge Graph (PrimeKG) presents a holistic view of diseases. PrimeKG integra

Graph Stochastic Attention (GSAT) The official implementation of GSAT for our paper: Interpretable and Generalizable Graph Learning via Stochastic Att

SignLangGNN When GNNs 💜 MediaPipe. This is a starter project where I tried to implement some traditional image classification problem i.e. the ASL si

Sapiens: Human antibody language model ____ _ / ___| __ _ _ __ (_) ___ _ __ ___ \___ \ / _` | '_ \| |/ _ \ '

KoBERTopic 모델 소개 KoBERTopic은 BERTopic을 한국어 데이터에 적용할 수 있도록 토크나이저와 BERT를 수정했습니다. 기존 BERTopic : https://github.com/MaartenGr/BERTopic/tree/05a6790b21009d

GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation [OpenReview] [arXiv] [Code] The official implementation of GeoDiff: A Geome

Persian-Image-Captioning We fine-tuning the Vision Encoder Decoder Model for the task of image captioning on the coco-flickr-farsi dataset. The implem

CAKE ACL 2022: CAKE: A Scalable Commonsense-Aware Framework For Multi-View Knowledge Graph Completion Introduction This is the PyTorch implementation

PyGOD is a Python library for graph outlier detection (anomaly detection). This exciting yet challenging field has many key applications, e.g., detect

ParsBigBird: Persian Bert For Long-Range Sequences The Bert and ParsBert algorithms can handle texts with token lengths of up to 512, however, many ta

PyGCL is a PyTorch-based open-source Graph Contrastive Learning (GCL) library, which features modularized GCL components from published papers, standa

Basic Machine Learning This repository contains a topic-wise curated list of Machine Learning and Deep Learning tutorials, articles and other resource

XLM-EMO: Multilingual Emotion Prediction in Social Media Text Abstract Detecting emotion in text allows social and computational scientists to study h

AMRBART An implementation for ACL2022 paper "Graph Pre-training for AMR Parsing and Generation". You may find our paper here (Arxiv). Requirements pyt

LightHuBERT LightHuBERT: Lightweight and Configurable Speech Representation Learning with Once-for-All Hidden-Unit BERT | Github | Huggingface | SUPER

MKGFormer Code for the SIGIR 2022 paper "Hybrid Transformer with Multi-level Fusion for Multimodal Knowledge Graph Completion" Model Architecture Illu

Introduction This codebase contains source-code of the Python-based implementation (ARES) of our SIGIR 2022 paper. Chen, Jia, et al. "Axiomatically Re

MoEBERT This PyTorch package implements MoEBERT: from BERT to Mixture-of-Experts via Importance-Guided Adaptation (NAACL 2022). Installation Create an

DeepGNN Overview DeepGNN is a framework for training machine learning models on large scale graph data. DeepGNN contains all the necessary features in

Session-aware BERT4Rec Official repository for "Exploiting Session Information in BERT-based Session-aware Sequential Recommendation", SIGIR 2022 shor

Intention Adaptive Graph Neural Network (IAGNN) This is the official repository of paper Intention Adaptive Graph Neural Network for Category-Aware Se

Twingrind This project brings profiling to TwinCAT PLCs. The general idea of the implementation is as follows. Twingrind is a TwinCAT library that inc

Diversifying Commonsense Reasoning Generation on Knowledge Graph Introduction -- This is the pytorch implementation of our ACL 2022 paper "Diversifyin

SDM - Lab 1 @ UPC 👨🏻‍💻 Table of contents Introduction Property Graph Dataset 1. Introduction This repo is all about what we have done in SDM lab 1

On Size-Oriented Long-Tailed Graph Classification of Graph Neural Networks We provide the code (in PyTorch) and datasets for our paper "On Size-Orient

Multi-view graph embedding clustering network: Joint self-supervision and block diagonal representation Simple implementation of our paper MVGC. The d

Commit Bot Automatically generate GitHub activity! We've all wanted to be the developer that commits every day, but that requires a lot of work. Let's

SGMC: Spectral Graph Matrix Completion Code for AAAI21 paper "Scalable and Explainable 1-Bit Matrix Completion via Graph Signal Learning". Data Format

GraphLily: A Graph Linear Algebra Overlay on HBM-Equipped FPGAs GraphLily is the first FPGA overlay for graph processing. GraphLily supports a rich se

Graph Data Science: an abstraction layer in Python for building knowledge graphs, integrated with popular graph libraries – atop Pandas, RDFlib, pySHACL, RAPIDS, NetworkX, iGraph, PyVis, pslpython, pyarrow, etc.

TGIN Tensorflow implementation of our method: "Triangle Graph Interest Network for Click-through Rate Prediction". Files in the folder dataset/ electr

MarkovGNN This is the official PyTorch-Geometric implementation of MarkovGNN paper under the title "MarkovGNN: Graph Neural Networks on Markov Diffusi

TorchMD-net TorchMD-Net provides state-of-the-art graph neural networks and equivariant transformer neural networks potentials for learning molecular

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

Code for CCA-SSG model proposed in the NeurIPS 2021 paper From Canonical Correlation Analysis to Self-supervised Graph Neural Networks.

The project has set itself the goal of analyzing the thoughts and interaction of Italian users through the social posts expressed through the Twitter platform on the day of the entry into force of the new measures. In particular, we want to research the reference hubs present on the network, but also the sentiment and emotions of peoples with respect to the new limitations.

Create a semantic search engine with a neural network (i.e. BERT) whose knowledge base can be updated. This engine can later be used for downstream tasks in NLP such as Q&A, summarization, generation, and natural language understanding (NLU).

Large-scale Knowledge Graph Construction with Prompting across tasks (predictive and generative), and modalities (language, image, vision + language, etc.)

FIRA is a learning-based commit message generation approach, which first represents code changes via fine-grained graphs and then learns to generate commit messages automatically.

Pretrained Japanese BERT models This is a repository of pretrained Japanese BERT models. The models are available in Transformers by Hugging Face. Mod

BoxPlotGraphAutomation Automatization of BoxPlot graph usin Python / Excel. This file is an automation of BoxPlot-Graph using python graph library mat

A Graph Learning library for Humans These novel algorithms include but are not limited to: A graph construction and graph searching class can be found

HAIS_2GNN: 3D Visual Grounding with Graph and Attention This repository is for the HAIS_2GNN research project. Tao Gu, Yue Chen Introduction The motiv

A tool to get a minimalist view of any architecture This tool has only be tested with the models included in this repo. Therefore, I can't guarantee t

This is the repository for codes for ML, domain generation, graph generation of Asymmetric Buckling Columns (ABC) dataset in the paper "Learning Mechanically Driven Emergent Behavior with Message Passing Neural Networks".

Graph Coloring - Weighted Vertex Coloring Problem This project proposes several local searches and an MCTS algorithm for the weighted vertex coloring

L3Cube-MahaCorpus L3Cube-MahaCorpus a Marathi monolingual data set scraped from different internet sources. We expand the existing Marathi monolingual

Code Impementation for "Mold into a Graph: Efficient Bayesian Optimization over Mixed Spaces" This repo contains the implementation of GEBO algorithm.

Graph Convolution Simulator (GCS) Source code for "Understanding Knowledge Integration in Language Models with Graph Convolutions" Requirements: PyTor

Python-AmongUsProblem Project in which we modelise an Among Us problem using graph theories. The rules are as following: Total of 100 players 10 playe

TGraM Multi-Object Tracking in Satellite Videos with Graph-Based Multi-Task Modeling, Qibin He, Xian Sun, Zhiyuan Yan, Beibei Li, Kun Fu Abstract Rece

NLP-Summarizer Natural language processing summarizer using 3 state of the art Transformer models: BERT, GPT2, and T5 This project aimed to provide in

Classification using Deep Learning Requirements PyTorch version = 1.9.1+cu111 Python version = 3.8.10 PyTorch-Lightning version = 1.4.9 Huggingface

Expense Tracker is a very good tool to keep track of your expenseditures and the total money you saved.

LabGraph is a a Python-first framework used to build sophisticated research systems with real-time streaming, graph API, and parallelism.

Iterative refinement graph neural network for antibody sequence-structure co-des

GraphNLI: A Graph-based Natural Language Inference Model for Polarity Prediction in Online Debates Vibhor Agarwal, Sagar Joglekar, Anthony P. Young an

Equivariant Subgraph Aggregation Networks (ESAN) This repository contains the official code of the paper Equivariant Subgraph Aggregation Networks (IC

Hatchet Hatchet is a Python-based library that allows Pandas dataframes to be indexed by structured tree and graph data. It is intended for analyzing

DIR-GNN "Discovering Invariant Rationales for Graph Neural Networks" (ICLR 2022)

Live Demo (currently not running, on it) Espial is an engine for automated organization and discovery in knowledge bases. It can be adapted to run wit

TorchGRL TorchGRL is the source code for our paper Graph Convolution-Based Deep Reinforcement Learning for Multi-Agent Decision-Making in Mixed Traffi

GNN_PPI Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction". Lear

Transformers are all you need In this workshop we will be exploring NLP state of the art transformers, with SOTA models like T5 and BERT, then build a

ruCLIP-SB RuCLIP-SB (Russian Contrastive Language–Image Pretraining SWIN-BERT) is a multimodal model for obtaining images and text similarities and re

machine-learning-with-graphs My solutions for Stanford University course CS224W: Machine Learning with Graphs Fall 2021 colabs Course materials can be

GenGNN: A Generic FPGA Framework for Graph Neural Network Acceleration Stefan Abi-Karam*, Yuqi He*, Rishov Sarkar*, Lakshmi Sathidevi, Zihang Qiao, Co

Dual-Contrastive-Learning A PyTorch implementation for our paper "Dual Contrastive Learning: Text Classification via Label-Aware Data Augmentation". Y

OntoProtein This is the implement of the paper "OntoProtein: Protein Pretraining With Ontology Embedding". OntoProtein is an effective method that mak

On Evaluation Metrics for Graph Generative Models Authors: Rylee Thompson, Boris Knyazev, Elahe Ghalebi, Jungtaek Kim, Graham Taylor This is the offic

GNDC For submission to IEEE TKDE. Overview Here we provide the implementation of GND-Nets (Graph Neural Diffusion Networks) in TensorFlow. The reposit

Author Name Disambiguation with Knowledge Graph Embeddings using Literals This is the repository for the master thesis project on Knowledge Graph Embe

GreaseLM: Graph REASoning Enhanced Language Models This repo provides the source code & data of our paper "GreaseLM: Graph REASoning Enhanced Language

TGRNet: A Table Graph Reconstruction Network for Table Structure Recognition Xue, Wenyuan, et al. "TGRNet: A Table Graph Reconstruction Network for Ta

Sequence-Labeling-Early-Exit Code for ACL 2021 paper: Accelerating BERT Inference for Sequence Labeling via Early-Exit Requirement: Please refer to re

STAR_KGC This repo contains the source code of the paper accepted by WWW'2021. "Structure-Augmented Text Representation Learning for Efficient Knowled

CSKG: The CommonSense Knowledge Graph CSKG is a commonsense knowledge graph that combines seven popular sources into a consolidated representation: AT

RoNER RoNER is a Named Entity Recognition model based on a pre-trained BERT transformer model trained on RONECv2. It is meant to be an easy to use, hi

Graph Analysis From Scratch Goal In this notebook we wanted to implement some functionalities to analyze a weighted graph only by using algorithms imp

Roam to Logseq The script loads a json export of a Roam graph and cleans it up f

BERTopic BERTopic is a topic modeling technique that leverages 🤗 transformers and c-TF-IDF to create dense clusters allowing for easily interpretable

On Evaluation Metrics for Graph Generative Models Authors: Rylee Thompson, Boris Knyazev, Elahe Ghalebi, Jungtaek Kim, Graham Taylor This is the offic

GPU implementation of kNN and SNN GPU implementation of $k$-Nearest Neighbors and Shared-Nearest Neighbors Supported by numba cuda and faiss library E

TensorDebugger (TDB) is a visual debugger for deep learning. It extends TensorFlow (Google's Deep Learning framework) with breakpoints + real-time visualization of the data flowing through the computational graph.

ECLARE ECLARE: Extreme Classification with Label Graph Correlations @InProceedings{Mittal21b, author = "Mittal, A. and Sachdeva, N. and Agrawal

GalaXC GalaXC: Graph Neural Networks with Labelwise Attention for Extreme Classification @InProceedings{Saini21, author = {Saini, D. and Jain,

Biomedical Entity Linking This repo provides the code for the paper BERT might be Overkill: A Tiny but Effective Biomedical Entity Linker based on Res

必要なソフト・パッケージ Python3 Numpy JSON Matplotlib 動作確認環境 MacBook Air M1 Python 3.8.2 (arm64) Numpy 1.22.0 Matplotlib 3.5.1 JSON 2.0.9 使い方 draw_time_histgram(

Visually Grounded Bert Language Model This repository is the official implementation of Explainable Semantic Space by Grounding Language to Vision wit

Applying BERT Fine Tuning to Sentiment Classification on Amazon Reviews Abstract Sentiment analysis has made great progress in recent years, due to th

Transformers-Tutorials Hi there! This repository contains demos I made with the Transformers library by 🤗 HuggingFace. Currently, all of them are imp

GraphMLTutorialNLDL22 Tutorial NLDL22: Introduction to Graph Machine Learning, with Jupyter notebooks This tutorial takes place during the conference