Python Biological-data-analysis Resources

Fine-Grained R2R Code and data of the Fine-Grained R2R Dataset proposed in the EMNLP2020 paper Sub-Instruction Aware Vision-and-Language Navigation. C

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

🏅 Collection of Kaggle Solutions and Ideas 🏅

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

Coreferee Author: Richard Paul Hudson, msg systems ag 1. Introduction 1.1 The basic idea 1.2 Getting started 1.2.1 English 1.2.2 German 1.2.3 Polish 1

small python skript to display tradegate data on a waveshare e-ink important you need locale "de_AT.UTF-8 UTF-8" installed. do so in raspi-config's Lo

AutoSF The code for our paper "AutoSF: Searching Scoring Functions for Knowledge Graph Embedding" and this paper has been accepted by ICDE2020. News:

OCTIS : Optimizing and Comparing Topic Models is Simple! OCTIS (Optimizing and Comparing Topic models Is Simple) aims at training, analyzing and compa

The dataTap Python library is the primary interface for using dataTap's rich data management tools. Create datasets, stream annotations, and analyze model performance all with one library.

Dice Loss for NLP Tasks This repository contains code for Dice Loss for Data-imbalanced NLP Tasks at ACL2020. Setup Install Package Dependencies The c

Labelled data remains a scarce resource in many practical NLP scenarios. This is especially the case when working with resource-poor languages (or text domains), or when using task-specific labels without pre-existing datasets. The only available option is often to collect and annotate texts by hand, which is expensive and time-consuming.

drawdata This small python app allows you to draw a dataset in a jupyter notebook. This should be very useful when teaching machine learning algorithm

ETL Pipeline with Airflow, Spark, s3, MongoDB and Amazon Redshift

Compact Transformers Preprint Link: Escaping the Big Data Paradigm with Compact Transformers By Ali Hassani[1]*, Steven Walton[1]*, Nikhil Shah[1], Ab

Simple but maybe too simple config management through python data classes. We use it for machine learning.

README Augment training images for deep neural networks by randomizing their visual style, as described in our paper: https://arxiv.org/abs/1809.05375

ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis [arxiv|pdf|v

Data Annotation, Data Labeling, Annotation Tooling, Training Data for Machine Learning

b3d_mocap_import addon for blender to import mocap data from tools like easymocap, frankmocap and Vibe ==================VIBE================== To use

The Django Leaflet Admin List package provides an admin list view featured by the map and bounding box filter for the geo-based data of the GeoDjango. It requires a django-leaflet package.

youtube-cdl Command line tool based on youtube-dl to easily download selected channels from your subscriptions. This tool is very handy if you want to

⚡ OPAL ⚡ Open Policy Administration Layer OPAL is an administration layer for Open Policy Agent (OPA), detecting changes to both policy and policy dat

sankee Visualize changes in classified time series data with interactive Sankey plots in Google Earth Engine Contents Description Installation Using P

DataTuner You have just found the DataTuner. This repository provides tools for fine-tuning language models for a task. See LICENSE.txt for license de

Introduction PyTorch3D provides efficient, reusable components for 3D Computer Vision research with PyTorch. Key features include: Data structure for

This tutorial's purpose is to introduce Pythonistas to methods for scaling their data science and machine learning work to larger datasets and larger models, using the tools and APIs they know and love from the PyData stack (such as numpy, pandas, and scikit-learn).

DABO: Data Augmentation with Bilevel Optimization [Paper] The goal is to automatically learn an efficient data augmentation regime for image classific

We are a group of like-minded people trying to make access to weather data in Python feel like a warm summer breeze, similar to other projects like rdwd for the R language, which originally drew our interest in this project.

TTS is a library for advanced Text-to-Speech generation. It's built on the latest research, was designed to achieve the best trade-off among ease-of-training, speed and quality. TTS comes with pretrained models, tools for measuring dataset quality and already used in 20+ languages for products and research projects.

This is a highly practical and example-based guide on visually representing data in reports and dashboards.

PClean: A Domain-Specific Probabilistic Programming Language for Bayesian Data Cleaning Warning: This is a rapidly evolving research prototype.

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

Py-FEAT is a suite for facial expressions (FEX) research written in Python. This package includes tools to detect faces, extract emotional facial expressions (e.g., happiness, sadness, anger), facial muscle movements (e.g., action units), and facial landmarks, from videos and images of faces, as well as methods to preprocess, analyze, and visualize FEX data.

This open source Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning.

Automated Penetration Testing Framework

bulbea "Deep Learning based Python Library for Stock Market Prediction and Modelling." Table of Contents Installation Usage Documentation Dependencies

A tour through tensorflow with financial data I present several models ranging in complexity from simple regression to LSTM and policy networks. The s

Algorithmic Trading This machine learning algorithm was built using Python 3 and scikit-learn with a Decision Tree Classifier. The program gathers sto

IntroNeuralNetworks in Python: A Template Project IntroNeuralNetworks is a project that introduces neural networks and illustrates an example of how o

Modeling High-Frequency Limit Order Book Dynamics Using Machine Learning Framework to capture the dynamics of high-frequency limit order books. Overvi

MachineLearningStocks in python: a starter project and guide EDIT as of Feb 2021: MachineLearningStocks is no longer actively maintained MachineLearni

folium Python Data, Leaflet.js Maps folium builds on the data wrangling strengths of the Python ecosystem and the mapping strengths of the Leaflet.js

geoplot: geospatial data visualization geoplot is a high-level Python geospatial plotting library. It's an extension to cartopy and matplotlib which m

felicette Satellite imagery for dummies. What can you do with this tool? TL;DR: Generate JPEG earth imagery from coordinates/location name with public

🌍 xarray-spatial: Raster-Based Spatial Analysis in Python 📍 Fast, Accurate Python library for Raster Operations ⚡ Extensible with Numba ⏩ Scalable w

Blender GIS Blender minimal version : 2.8 Mac users warning : currently the addon does not work on Mac with Blender 2.80 to 2.82. Please do not report

MovingPandas MovingPandas implements a Trajectory class and corresponding methods based on GeoPandas. Visit movingpandas.org for details! You can run

Welcome to the lidar package lidar is Python package for delineating the nested hierarchy of surface depressions in digital elevation models (DEMs). I

eo-box eobox is a Python package with a small collection of tools for working with Remote Sensing / Earth Observation data. Package Overview So far, t

thunder scalable analysis of image and time series analysis in python Thunder is an ecosystem of tools for the analysis of image and time series data

pyroSAR A Python Framework for Large-Scale SAR Satellite Data Processing The pyroSAR package aims at providing a complete solution for the scalable or

LANDSAT-Download It seems USGS has changed the structure of its data, and so far, I have not been able to find the direct links to the products? Help

gpdvega gpdvega is a bridge between GeoPandas a geospatial extension of Pandas and the declarative statistical visualization library Altair, which all

Documentation | Documentation (dev version) | Contact | Part of the Fatiando a Terra project About Verde is a Python library for processing spatial da

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

OSMnet Tools for the extraction of OpenStreetMap (OSM) street network data. Intended to be used in tandem with Pandana and UrbanAccess libraries to ex

geojsonio.py Open GeoJSON data on geojson.io from Python. geojsonio.py also contains a command line utility that is a Python port of geojsonio-cli. Us

chupaESRI About ChupaESRI is a Python module/command line tool to extract features from ArcGIS Server map services. Name? Think "chupacabra" or "Chupa

Pandana Pandana is a Python library for network analysis that uses contraction hierarchies to calculate super-fast travel accessibility metrics and sh

OSMnx OSMnx is a Python package that lets you download geospatial data from OpenStreetMap and model, project, visualize, and analyze real-world street

Lifelong Machine Learning with Deep Streaming Linear Discriminant Analysis This is a PyTorch implementation of the Deep Streaming Linear Discriminant

Python script that analyses news headline or body sentiment and returns the overall media sentiment of any given coin. It can take multiple coins an

A Python Library for Document Layout Understanding

Apache Superset is a Data Visualization and Data Exploration Platform

Distribution Analyser Distribution Analyser is a Web App that allows you to interactively explore continuous distributions from SciPy and fit distribu

emb-ntua-workshop This workshop discusses introductory concepts of machine learning and data mining following a hands-on approach using popular tools

提要 持续收集原神抽卡记录中 可以使用抽卡记录导出工具导出抽卡记录的json，将json文件发送至[email protected]，我会在清除个人信息后将文件提交到此处。以下两种导出工具任选其一即可。 一种抽卡记录导出工具 from sunfkny 使用方法演示视频 另一种electron版的抽

Cutoff: A Simple Data Augmentation Approach for Natural Language This repository contains source code necessary to reproduce the results presented in

InversePrompting Paper: Controllable Generation from Pre-trained Language Models via Inverse Prompting Code: The code is provided in the "chinese_ip"

UA-GEC: Grammatical Error Correction and Fluency Corpus for the Ukrainian Language This repository contains UA-GEC data and an accompanying Python lib

StyleSpace Analysis: Disentangled Controls for StyleGAN Image Generation Demo video: CVPR 2021 Oral: Single Channel Manipulation: Localized or attribu

NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

Neural-Semi-supervised-Learning-for-Text-Classification-Under-Large-Scale-Pretraining Code, models and Datasets for《Neural Semi-supervised Learning fo

An open-source library of algorithms to analyse time series in GPU and CPU.

Regularizing Generative Adversarial Networks under Limited Data [Project Page][Paper] Implementation for our GAN regularization method. The proposed r

wsss-analysis The code of: A Comprehensive Analysis of Weakly-Supervised Semantic Segmentation in Different Image Domains, arXiv pre-print 2019 paper.

This project is part of Eleuther AI's quest to create a massive repository of high quality text data for training language models.

Bloodhound for Linux Ingest a dumped OpenLDAP ldif into neo4j to be visualized in Bloodhound. Usage: ./ldif_to_neo4j.py ./sample.ldif | cypher-shell -

Description Using hotel data and AI to predict high value guests and potential VIP guests. Hotel can leverage on prediction resutls to run more effect

Flenser Have you ever been handed a dataset you've never seen before? Flenser is a simple, minimal, automated exploratory data analysis tool. It runs

Table of contents What is DOP Design Concept A Typical DOP Orchestration Flow Prerequisites - Run in Docker For DOP Native Features For DBT Instructio

Welcome to Cython! Cython is a language that makes writing C extensions for Python as easy as Python itself. Cython is based on Pyrex, but supports mo

IPython: Productive Interactive Computing Overview Welcome to IPython. Our full documentation is available on ipython.readthedocs.io and contains info

Socorro Socorro is a Mozilla-centric ingestion pipeline and analysis tools for crash reports using the Breakpad libraries. Support This is a Mozilla-s

Boltons boltons should be builtins. Boltons is a set of over 230 BSD-licensed, pure-Python utilities in the same spirit as — and yet conspicuously mis

Viewflow Viewflow is a framework built on the top of Airflow that enables data scientists to create materialized views. It allows data scientists to f

GLOM TensorFlow This Python package attempts to implement GLOM in TensorFlow, which allows advances made by several different groups transformers, neu

The mljar-supervised is an Automated Machine Learning Python package that works with tabular data. I

Edward is a Python library for probabilistic modeling, inference, and criticism. It is a testbed for fast experimentation and research with probabilis

Sensitivity Analysis Library (SALib) Python implementations of commonly used sensitivity analysis methods. Useful in systems modeling to calculate the

TensorFlow Probability TensorFlow Probability is a library for probabilistic reasoning and statistical analysis in TensorFlow. As part of the TensorFl

dabl The data analysis baseline library. "Mr Sanchez, are you a data scientist?" "I dabl, Mr president." Find more information on the website. State o

Scikit-TDA is a home for Topological Data Analysis Python libraries intended for non-topologists. This project aims to provide a curated library of TD

iterative-stratification iterative-stratification is a project that provides scikit-learn compatible cross validators with stratification for multilab

combo: A Python Toolbox for Machine Learning Model Combination Deployment & Documentation & Stats Build Status & Coverage & Maintainability & License

Mlxtend (machine learning extensions) is a Python library of useful tools for the day-to-day data science tasks. Sebastian Raschka 2014-2021 Links Doc

imbalanced-learn imbalanced-learn is a python package offering a number of re-sampling techniques commonly used in datasets showing strong between-cla

Here is Poutyne. Poutyne is a simplified framework for PyTorch and handles much of the boilerplating code needed to train neural networks. Use Poutyne

PyTorch Implementation of Differentiable SDE Solvers This library provides stochastic differential equation (SDE) solvers with GPU support and efficie

README TabNet : Attentive Interpretable Tabular Learning This is a pyTorch implementation of Tabnet (Arik, S. O., & Pfister, T. (2019). TabNet: Attent