Python Biological-data-analysis Resources

Delving into Deep Imbalanced Regression This repository contains the implementation code for paper: Delving into Deep Imbalanced Regression Yuzhe Yang

Blockchain ✨ Learn Blockchains by Building One Yourself Installation Make sure Python 3.6+ is installed. Install Flask Web Framework. Clone this repos

ProcrustEs-KGE Paddle implementation for Highly Efficient Knowledge Graph Embedding Learning with Orthogonal Procrustes Analysis 🙈 A more detailed re

The lottery ticket hypothesis (LTH) reveals the existence of winning tickets (sparse but critical subnetworks) for dense networks, that can be trained in isolation from random initialization to match the latter’s accuracies.

Sentance Parser Executing the Program Make sure Python 3.6+ is installed. Install requirements $ pip install requirements.txt Run the program:

SYMPAIS: Symbolic Parallel Adaptive Importance Sampling for Probabilistic Program Analysis Overview | Installation | Documentation | Examples | Notebo

SerialToOSC-Bridge Simple Python application to transform Serial data into OSC messages. The current purpose is to be a compatibility layer between ha

PyDLC - Density Line Charts with Python Python implementation of the Density Line Chart (Moritz & Fisher, 2018) to visualize large collections of time

XBNet - Xtremely Boosted Network Boosted neural network for tabular data XBNet is an open source project which is built with PyTorch which tries to co

SHOT++ Code for our TPAMI submission "Source Data-absent Unsupervised Domain Adaptation through Hypothesis Transfer and Labeling Transfer" that is ext

Vid2Doppler: Synthesizing Doppler Radar Data from Videos for Training Privacy-Preserving Activity Recognition This is the research repository for Vid2

Scrape Financial Data of Vietnamese Listed Companies - Version 2 A standalone package to scrape financial data from listed Vietnamese companies via Vi

Gotta Go Fast When Generating Data with Score-Based Models This repo contains the official implementation for the paper Gotta Go Fast When Generating

🔬 A curated list of awesome machine learning strategies & tools in financial market.

APKLeaks - Scanning APK file for URIs, endpoints & secrets.

Wizard of Search Engine: Access to Information Through Conversations with Search Engines by Pengjie Ren, Zhongkun Liu, Xiaomeng Song, Hongtao Tian, Zh

Lumen project provides a framework for visual analytics, which allows users to build data-driven dashboards from a simple yaml specification

Home assistant support for Opendata CWB. The readme in Traditional Chinese. This integration is based on OpenWeatherMap (@csparpa, pyowm) to develop.

Solve Volterra and Fredholm integral equations This Python package estimates Volterra and Fredholm integral equations using known techniques. Installa

This is the repository for The Python Workshop, published by Packt. It contains all the supporting project files necessary to work through the course from start to finish.

Keras-1D-ACGAN-Data-Augmentation What is the ACGAN(Auxiliary Classifier GANs) ? Related Paper : [Abstract : Synthesizing high resolution photorealisti

Stox A Module to predict the "close price" for the next day and give "technical analysis". It uses a Neural Network and the LSTM algorithm to predict

SalsaNext: Fast, Uncertainty-aware Semantic Segmentation of LiDAR Point Clouds for Autonomous Driving Abstract In this paper, we introduce SalsaNext f

DS3L This is the code for paper "Safe Deep Semi-Supervised Learning for Unseen-Class Unlabeled Data" published in ICML 2020. Setups The code is implem

Self-Supervised-MVS This repository is the official PyTorch implementation of our AAAI 2021 paper: "Self-supervised Multi-view Stereo via Effective Co

Exploring Data-Efficient 3D Scene Understanding with Contrastive Scene Contexts The rapid progress in 3D scene understanding has come with growing dem

DeepFRI Deep functional residue identification Citing @article {Gligorijevic2019, author = {Gligorijevic, Vladimir and Renfrew, P. Douglas and Koscio

ACCENTOR: Adding Chit-Chat to Enhance Task-Oriented Dialogues Overview ACCENTOR consists of the human-annotated chit-chat additions to the 23.8K dialo

pyprobables is a pure-python library for probabilistic data structures. The goal is to provide the developer with a pure-python implementation of common probabilistic data-structures to use in their work.

A Python package for geospatial analysis and interactive mapping with minimal coding in a Jupyter environment

SiamMOT: Siamese Multi-Object Tracking

Wietse de Vries • Martijn Bartelds • Malvina Nissim • Martijn Wieling Adapting Monolingual Models: Data can be Scarce when Language Similarity is High

Remote-sensing opensource python library reading optical and SAR sensors, loading and stacking bands, clouds, DEM and index.

federated is the source code for the Bachelor's Thesis Privacy-Preserving Federated Learning Applied to Decentralized Data (Spring 2021, NTNU) Federat

Orchest is a browser based IDE for Data Science. It integrates your favorite Data Science tools out of the box, so you don’t have to. The application is easy to use and can run on your laptop as well as on a large scale cloud cluster.

Image Crop Analysis This is a repo for the code used for reproducing our Image Crop Analysis paper as shared on our blog post. If you plan to use this

DDAMS This is the pytorch code for our IJCAI 2021 paper Dialogue Discourse-Aware Graph Model and Data Augmentation for Meeting Summarization [Arxiv Pr

Synthetic Dataset Generator Authors: Stanislava Fedorova Alberto Tono Meher Shashwat Nigam Jiayao Zhang Amirhossein Ahmadnia Cecilia bolognesi Dominik

albu_scheduler Scheduler for albumentations transforms based on PyTorch schedulers interface Usage TransformMultiStepScheduler import albumentations a

An Unsupervised Graph-based Toolbox for Fraud Detection Introduction: UGFraud is an unsupervised graph-based fraud detection toolbox that integrates s

Apache Liminals goal is to operationalise the machine learning process, allowing data scientists to quickly transition from a successful experiment to an automated pipeline of model training, validation, deployment and inference in production. Liminal provides a Domain Specific Language to build ML workflows on top of Apache Airflow.

⚛️ Clonebot - Heroku version ⚡ CloneBot is a telegram bot that allows you to copy folder/team drive to team drives. One of the main advantage of this

Currently a Beta-Version lucidmode is an open-source, low-code and lightweight Python framework for transparent and interpretable machine learning mod

Public Datasets Pipelines Cloud-native, data pipeline architecture for onboarding datasets to the Google Cloud Public Datasets Program. Overview Requi

AWS Data Engineering Pipeline This is a repository for the Duke University Cloud Computing course project on Serverless Data Engineering Pipeline. For

Tamil Nadu Chief Minister's Relief Fund Donors Scrapped data from https://ereceipt.tn.gov.in/cmprf/Interface/CMPRF/MonthWiseReport Scrapper scrapper.p

iterable-subprocess Python utility function to communicate with a subprocess using iterables: for when data is too big to fit in memory and has to be

Python Streaming Anomaly Detection (PySAD) PySAD is an open-source python framework for anomaly detection on streaming multivariate data. Documentatio

A package to aggregate gridded data in xarray to polygons in geopandas using area-weighting from the relative area overlaps between pixels and polygons.

Graphsignal Logger Overview Graphsignal is an observability platform for monitoring and troubleshooting production machine learning applications. It h

RoBERTaABSA This repo contains the code for NAACL 2021 paper titled Does syntax matter? A strong baseline for Aspect-based Sentiment Analysis with RoB

Python function to stream unzip all the files in a ZIP archive: without loading the entire ZIP file or any of its files into memory at once

Show Data is to generate html tables for large scale image dataset, especially for the dataset in remote server. It provides some useful commond line tools and fully customizeble API reference to generate html table different tasks.

Stream Framework Activity Streams & Newsfeeds Stream Framework is a Python library which allows you to build activity streams & newsfeeds using Cassan

tinkproject The program for portfolio analysis via Tinkoff API Hello! This is my first project, please, don't judge me. This project was developed for

Time series Timeseries Deep Learning Pytorch fastai - State-of-the-art Deep Learning with Time Series and Sequences in Pytorch / fastai

Multi-Task Framework for Cross-Lingual Abstractive Summarization (MCLAS) The code for ACL2021 paper Cross-Lingual Abstractive Summarization with Limit

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Crypto_analysis Discription: simple streamlit(screener) app to make MMA and OSC analysis for cyrpto-currenices, and gives resaults for which coins are

A curated list of programmatic weak supervision papers and resources

Deep learning toolbox based on PyTorch for hyperspectral data classification.

Code & Data for Enhancing Photorealism Enhancement

This repo includes the Pytorch-Geometric implementation of a series of Graph Neural Network (GNN) based fake news detection models. All GNN models are implemented and evaluated under the User Preference-aware Fake News Detection (UPFD) framework. The fake news detection problem is instantiated as a graph classification task under the UPFD framework.

A framework for cleaning Chinese dialog data

Self-Supervised Music Analysis Self-Supervised Contrastive Learning of Music Spectrograms Dataset Songs on the Billboard Year End Hot 100 were collect

Esparto is a simple HTML and PDF document generator for Python. Its primary use is for generating shareable single page reports with content from popular analytics and data science libraries.

python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu

👩‍✈️ Coqpit Simple, light-weight and no dependency config handling through python data classes with to/from JSON serialization/deserialization. Curre

30 Days Of Machine Learning Using Pytorch Objective of the repository is to learn and build machine learning models using Pytorch. List of Algorithms

MevonAI - Speech Emotion Recognition

This is the XLM-T repository, which includes data, code and pre-trained multilingual language models for Twitter. XLM-T - A Multilingual Language Mode

Parrot is a paraphrase based utterance augmentation framework purpose built to accelerate training NLU models. A paraphrase framework is more than just a paraphrasing model.

Hue Editor: Open source SQL Query Assistant for Databases/Warehouses

DeepSpeed is a deep learning optimization library that makes distributed training easy, efficient, and effective.

Amundsen is a metadata driven application for improving the productivity of data analysts, data scientists and engineers when interacting with data.

Texar-PyTorch is a toolkit aiming to support a broad set of machine learning, especially natural language processing and text generation tasks. Texar

torchaudio: an audio library for PyTorch The aim of torchaudio is to apply PyTorch to the audio domain. By supporting PyTorch, torchaudio follows the

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

Python scripts for ETL (extract, transform and load) jobs for Ethereum blocks, transactions, ERC20 / ERC721 tokens, transfers, receipts, logs, contracts, internal transactions.

An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.

erdantic is a simple tool for drawing entity relationship diagrams (ERDs) for Python data model classes. Diagrams are rendered using the venerable Graphviz library.

AdaSpeech 2: Adaptive Text to Speech with Untranscribed Data [WIP] Unofficial Pytorch implementation of AdaSpeech 2. Requirements : All code written i

CLEAR: Consistent Lifting, Embedding, and Alignment Rectification Algorithm The Matlab, Python, and C++ implementation of the CLEAR algorithm, as desc

LADA This repo contains codes for the following paper: Jiaao Chen*, Zhenghui Wang*, Ran Tian, Zichao Yang, Diyi Yang: Local Additivity Based Data Augm

SentiLARE: Sentiment-Aware Language Representation Learning with Linguistic Knowledge Introduction SentiLARE is a sentiment-aware pre-trained language

Learning Representational Invariances for Data-Efficient Action Recognition Official PyTorch implementation for Learning Representational Invariances

django-import-export django-import-export is a Django application and library for importing and exporting data with included admin integration. Featur

causaldata This repository will contain R, Stata, and Python packages, all called causaldata, which contain data sets that can be used to implement th

hyppo (HYPothesis Testing in PythOn, pronounced "Hippo") is an open-source software package for multivariate hypothesis testing.

ArviZ (pronounced "AR-vees") is a Python package for exploratory analysis of Bayesian models. Includes functions for posterior analysis, data storage, model checking, comparison and diagnostics

Algo Drills A command line tool for memorizing algorithms in Python by typing them. In alpha and things will change. How it works Type out an algorith

SharinGAN Official repo for the work titled "SharinGAN: Combining Synthetic and Real Data for Unsupervised GeometryEstimation" The official project we

🤗 The largest hub of ready-to-use NLP datasets for ML models with fast, easy-to-use and efficient data manipulation tools

pihole-antitelemetry Research shows Google collects 20x more data from Android than Apple collects from iOS. Block both using these pihole lists. Proj

SARS-CoV-2 processing requests Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide. Prerequisites This autom

FastAPI-Wrapper CLI & APIness Streamlit App Arvindra Sehmi, Oxford Economics Ltd. | Website | LinkedIn (Updated: 21 April, 2021) fastapi-wrapper is mo

xarray-sentinel WARNING: this product is a "technology preview" / pre-Alpha Xarray backend to explore and load Copernicus Sentinel-1 satellite data pr

|Anaconda|_ MAPIE - Model Agnostic Prediction Interval Estimator MAPIE allows you to easily estimate prediction intervals using your favourite sklearn