Python Crispr-analysis Resources

Case studies with Bayesian methods

pysentimiento: A Python toolkit for Sentiment Analysis and Social NLP tasks A Transformer-based library for SocialNLP classification tasks. Currently

WobblyStitcher Introduction A scalable implementation of WobblyStitcher Dependencies $ python -m pip install numpy scikit-image Visualization ImageJ

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

skimpy Welcome Welcome to skimpy! skimpy is a light weight tool that provides summary statistics about variables in data frames within the console. Th

A Python multilingual toolkit for Sentiment Analysis and Social NLP tasks

MultiModal-InfoMax This repository contains the official implementation code of the paper Improving Multimodal Fusion with Hierarchical Mutual Informa

Thermostat is a large collection of NLP model explanations and accompanying analysis tools. Combines explainability methods from the captum library wi

Multimodal Deep Learning 🎆 🎆 🎆 Announcing the multimodal deep learning repository that contains implementation of various deep learning-based model

A Python library for calculating a large variety of statistics from text(s) using spaCy v.3 pipeline components and extensions. TextDescriptives can be used to calculate several descriptive statistics, readability metrics, and metrics related to dependency distance.

Quantel is a powerful financial data and insights API. It provides easy access to world-class financial information. Quantel goes beyond just financial statements, giving users valuable information like insider transactions, major shareholder transactions, share ownership, peers, and so much more.

ktool Static Mach-O binary metadata analysis tool / information dumper pip3 install k2l Development is currently taking place on the @python3.10 branc

GoGettr GoGettr is an API client for GETTR, a "non-bias [sic] social network." (We will not reward their domain with a hyperlink.) GoGettr is built an

Filtration Curves for Graph Representation This repository provides the code from the KDD'21 paper Filtration Curves for Graph Representation. Depende

Malcolm is a powerful, easily deployable network traffic analysis tool suite for full packet capture artifacts (PCAP files) and Zeek logs.

This is the code for ACL2021 paper A Unified Generative Framework for Aspect-Based Sentiment Analysis Install the package in the requirements.txt, the

已经将项目的关键文件上传，包含微博爬虫、LDA主题分析和情感分析三个部分。 1.微博爬虫 实现微博评论爬取和微博用户信息爬取，一天大概十万条。 2.LDA主题分析 实现文档主题抽取，包括数据清洗及分词、主题数的确定（主题一致性和困惑度）和最优主题模型的选择（暴力搜索）。 3.情感分析 实现评论文本的

Yuyu Scanner Yuyu Scanner is a Web Reconnaissance & Web Analysis Scanner to find assets and information about targets. installation ! run as root

Leetcode compensations report Scraping and analysis of leetcode-compensations page.

Continuous Wavelet Transforms in PyTorch This is a PyTorch implementation for the wavelet analysis outlined in Torrence and Compo (BAMS, 1998). The co

LogDeep is an open source deeplearning-based log analysis toolkit for automated anomaly detection.

Performance Ninja Class This is an online course where you can learn to find and fix low-level performance issues, for example CPU cache misses and br

With CueObserve, you can run anomaly detection on data in your SQL data warehouses and databases. Getting Started Install via Docker docker run -p 300

TLA - Twitter Linguistic Analysis Tool for linguistic analysis of communities TLA is built using PyTorch, Transformers and several other State-of-the-

This repo contains sample code and example datasets from Jon Stewart and Noah Rubin's presentation at the 2021 SANS DFIR Summit titled Greppin' Logs. The talk was centered around the idea that Forensics is Data Engineering and Data Science, and should be approached as such. Jon and Noah focused on the core (Unix) command line tools useful to anyone analyzing datasets from a terminal, purpose-built tools for handling structured tabular and JSON data, Stroz Friedberg's open source multipattern search tool Lightgrep, and scaling with AWS.

Newsemble is an API that provides easy access to the current news for programmatic analysis. It has been built using Python, BeautifulSoup and MongoDB.

About DRIFT is a tool for Diachronic Analysis of Scientific Literature. The application offers user-friendly and customizable utilities for two modes:

Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools that leverages the spatial coordinates of the data, as well as tissue images if available.

Aspect-level Sentiment Classification Code and dataset for ACL2018 [paper] ‘‘Exploiting Document Knowledge for Aspect-level Sentiment Classification’’

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening Introduction This is an implementation of the model used for breast

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

All-in-one web-based development environment for machine learning Getting Started • Features & Screenshots • Support • Report a Bug • FAQ • Known Issu

A linter to manage all your python exceptions and try/except blocks (limited only for those who like dinosaurs).

A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.

Manage your exceptions in Python like a PRO Currently in BETA. Inspired by this blog post. I shared the building process of this tool here. “For those

Posture: Pose Tracking and Machine Learning for prescribing corrective suggestions to improve posture and form while exercising. This repository conta

Visual Python is a GUI-based Python code generator, developed on the Jupyter Notebook environment as an extension.

StyleSpace Analysis: Disentangled Controls for StyleGAN Image Generation Implementation of StyleSpace Analysis: Disentangled Controls for StyleGAN Ima

A ready-to-use framework of latest models for structured (tabular) data learning with PyTorch. Applications include recommendation, CRT prediction, healthcare analytics, and etc.

Stox ⚡ A Python Module For The Stock Market ⚡ A Module to predict the "close price" for the next day and give "technical analysis". It uses a Neural N

Gamestonk Terminal is an awesome stock and crypto market terminal. A FOSS alternative to Bloomberg Terminal.

Objective of the repository is to learn and build machine learning models using Pytorch. 30DaysofML Using Pytorch

wechat-wow-analysis Understanding WeChat User Preferences and “Wow” Diffusion. Fanjin Zhang, Jie Tang, Xueyi Liu, Zhenyu Hou, Yuxiao Dong, Jing Zhang,

frida-ceserver frida-based ceserver. iOS analysis is possible with Cheat Engine. Original by Dark Byte. Usage Install frida on iOS. python main.py Cyd

TunBERT is the first release of a pre-trained BERT model for the Tunisian dialect using a Tunisian Common-Crawl-based dataset. TunBERT was applied to three NLP downstream tasks: Sentiment Analysis (SA), Tunisian Dialect Identification (TDI) and Reading Comprehension Question-Answering (RCQA)

🧪📈 🐍. The purpose of the panel-chemistry project is to make it really easy for you to do DATA ANALYSIS and build powerful DATA AND VIZ APPLICATIONS within the domain of Chemistry using using Python and HoloViz Panel.

spafe aims to simplify features extractions from mono audio files. The library can extract of the following features: BFCC, LFCC, LPC, LPCC, MFCC, IMFCC, MSRCC, NGCC, PNCC, PSRCC, PLP, RPLP, Frequency-stats etc. It also provides various filterbank modules (Mel, Bark and Gammatone filterbanks) and other spectral statistics.

🐸 Identify anything. pyWhat easily lets you identify emails, IP addresses, and more. Feed it a .pcap file or some text and it'll tell you what it is! 🧙‍♀️

Kats, a kit to analyze time series data, a lightweight, easy-to-use, generalizable, and extendable framework to perform time series analysis, from understanding the key statistics and characteristics, detecting change points and anomalies, to forecasting future trends.

Segmentation and Identification of Vertebrae in CT Scans using CNN, k-means Clustering and k-NN If you use this code for your research, please cite ou

The MDAkit for membrane curvature analysis is part of the Google Summer of Code program and it is linked to a Code of Conduct.

NBEATSx: Neural basis expansion analysis with exogenous variables We extend the NBEATS model to incorporate exogenous factors. The resulting method, c

SolvationAnalysis The macroscopic behavior of a liquid is determined by its microscopic structure. For ionic systems, like batteries and many enzymes,

MOT Tracked object bounding box association (CenterTrack++) New association method based on CenterTrack. Two new branches (Tracked Size and IOU) are a

Sparsity Probe: Analysis tool for Deep Learning Models This repository is a limited implementation of Sparsity Probe: Analysis tool for Deep Learning

InsightFace: 2D and 3D Face Analysis Project on MXNet and PyTorch

ProcrustEs-KGE Paddle implementation for Highly Efficient Knowledge Graph Embedding Learning with Orthogonal Procrustes Analysis 🙈 A more detailed re

Sentance Parser Executing the Program Make sure Python 3.6+ is installed. Install requirements $ pip install requirements.txt Run the program:

SYMPAIS: Symbolic Parallel Adaptive Importance Sampling for Probabilistic Program Analysis Overview | Installation | Documentation | Examples | Notebo

🔬 A curated list of awesome machine learning strategies & tools in financial market.

APKLeaks - Scanning APK file for URIs, endpoints & secrets.

Solve Volterra and Fredholm integral equations This Python package estimates Volterra and Fredholm integral equations using known techniques. Installa

Stox A Module to predict the "close price" for the next day and give "technical analysis". It uses a Neural Network and the LSTM algorithm to predict

pyprobables is a pure-python library for probabilistic data structures. The goal is to provide the developer with a pure-python implementation of common probabilistic data-structures to use in their work.

A Python package for geospatial analysis and interactive mapping with minimal coding in a Jupyter environment

SiamMOT: Siamese Multi-Object Tracking

Image Crop Analysis This is a repo for the code used for reproducing our Image Crop Analysis paper as shared on our blog post. If you plan to use this

RoBERTaABSA This repo contains the code for NAACL 2021 paper titled Does syntax matter? A strong baseline for Aspect-based Sentiment Analysis with RoB

Time series Timeseries Deep Learning Pytorch fastai - State-of-the-art Deep Learning with Time Series and Sequences in Pytorch / fastai

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Crypto_analysis Discription: simple streamlit(screener) app to make MMA and OSC analysis for cyrpto-currenices, and gives resaults for which coins are

This repo includes the Pytorch-Geometric implementation of a series of Graph Neural Network (GNN) based fake news detection models. All GNN models are implemented and evaluated under the User Preference-aware Fake News Detection (UPFD) framework. The fake news detection problem is instantiated as a graph classification task under the UPFD framework.

Self-Supervised Music Analysis Self-Supervised Contrastive Learning of Music Spectrograms Dataset Songs on the Billboard Year End Hot 100 were collect

Esparto is a simple HTML and PDF document generator for Python. Its primary use is for generating shareable single page reports with content from popular analytics and data science libraries.

python_graphs This package is for computing graph representations of Python programs for machine learning applications. It includes the following modu

30 Days Of Machine Learning Using Pytorch Objective of the repository is to learn and build machine learning models using Pytorch. List of Algorithms

MevonAI - Speech Emotion Recognition

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis. You write a high level configuration file specifying your in

SentiLARE: Sentiment-Aware Language Representation Learning with Linguistic Knowledge Introduction SentiLARE is a sentiment-aware pre-trained language

ArviZ (pronounced "AR-vees") is a Python package for exploratory analysis of Bayesian models. Includes functions for posterior analysis, data storage, model checking, comparison and diagnostics

SARS-CoV-2 processing requests Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide. Prerequisites This autom

PyKale is a PyTorch library for multimodal learning and transfer learning as well as deep learning and dimensionality reduction on graphs, images, texts, and videos. By adopting a unified pipeline-based API design, PyKale enforces standardization and minimalism, via reusing existing resources, reducing repetitions and redundancy, and recycling learning models across areas.

Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.

OCTIS : Optimizing and Comparing Topic Models is Simple! OCTIS (Optimizing and Comparing Topic models Is Simple) aims at training, analyzing and compa

ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis ForgeryNet: A Versatile Benchmark for Comprehensive Forgery Analysis [arxiv|pdf|v

TTS is a library for advanced Text-to-Speech generation. It's built on the latest research, was designed to achieve the best trade-off among ease-of-training, speed and quality. TTS comes with pretrained models, tools for measuring dataset quality and already used in 20+ languages for products and research projects.

DomainCAT (Domain Connectivity Analysis Tool) Domain Connectivity Analysis Tool is used to analyze aggregate connectivity patterns across a set of dom

Py-FEAT is a suite for facial expressions (FEX) research written in Python. This package includes tools to detect faces, extract emotional facial expressions (e.g., happiness, sadness, anger), facial muscle movements (e.g., action units), and facial landmarks, from videos and images of faces, as well as methods to preprocess, analyze, and visualize FEX data.

This open source Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning.

Automated Penetration Testing Framework

bulbea "Deep Learning based Python Library for Stock Market Prediction and Modelling." Table of Contents Installation Usage Documentation Dependencies

geoplot: geospatial data visualization geoplot is a high-level Python geospatial plotting library. It's an extension to cartopy and matplotlib which m

🌍 xarray-spatial: Raster-Based Spatial Analysis in Python 📍 Fast, Accurate Python library for Raster Operations ⚡ Extensible with Numba ⏩ Scalable w

MovingPandas MovingPandas implements a Trajectory class and corresponding methods based on GeoPandas. Visit movingpandas.org for details! You can run

Welcome to the lidar package lidar is Python package for delineating the nested hierarchy of surface depressions in digital elevation models (DEMs). I

thunder scalable analysis of image and time series analysis in python Thunder is an ecosystem of tools for the analysis of image and time series data

peartree 🍐 🌳 peartree is a library for converting GTFS feed schedules into a representative directed network graph. The tool uses Partridge to conve

Pandana Pandana is a Python library for network analysis that uses contraction hierarchies to calculate super-fast travel accessibility metrics and sh